Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27345

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27335 and QEN71_RS27340 overlap by 4 nucleotidesQEN71_RS27340 and QEN71_RS27345 are separated by 39 nucleotidesQEN71_RS27345 and QEN71_RS27350 are separated by 149 nucleotides QEN71_RS27335: QEN71_RS27335 - NUDIX domain-containing protein, at 6,090,502 to 6,090,942 _RS27335 QEN71_RS27340: QEN71_RS27340 - ATP-binding protein, at 6,090,939 to 6,091,808 _RS27340 QEN71_RS27345: QEN71_RS27345 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 6,091,848 to 6,093,089 _RS27345 QEN71_RS27350: QEN71_RS27350 - preprotein translocase subunit SecA, at 6,093,239 to 6,096,049 _RS27350 Position (kb) 6091 6092 6093 6094Strain fitness (log2 ratio) -2 -1 0 1 2at 6091.105 kb on + strand, within QEN71_RS27340at 6091.105 kb on + strand, within QEN71_RS27340at 6091.105 kb on + strand, within QEN71_RS27340at 6091.105 kb on + strand, within QEN71_RS27340at 6091.105 kb on + strand, within QEN71_RS27340at 6091.106 kb on - strand, within QEN71_RS27340at 6091.106 kb on - strand, within QEN71_RS27340at 6091.106 kb on - strand, within QEN71_RS27340at 6091.106 kb on - strand, within QEN71_RS27340at 6091.106 kb on - strand, within QEN71_RS27340at 6091.126 kb on + strand, within QEN71_RS27340at 6091.126 kb on + strand, within QEN71_RS27340at 6091.126 kb on + strand, within QEN71_RS27340at 6091.127 kb on - strand, within QEN71_RS27340at 6091.127 kb on - strand, within QEN71_RS27340at 6091.179 kb on + strand, within QEN71_RS27340at 6091.179 kb on + strand, within QEN71_RS27340at 6091.180 kb on - strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.219 kb on + strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.220 kb on - strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.240 kb on + strand, within QEN71_RS27340at 6091.241 kb on - strand, within QEN71_RS27340at 6091.241 kb on - strand, within QEN71_RS27340at 6091.241 kb on - strand, within QEN71_RS27340at 6091.241 kb on - strand, within QEN71_RS27340at 6091.241 kb on - strand, within QEN71_RS27340at 6091.276 kb on + strand, within QEN71_RS27340at 6091.276 kb on + strand, within QEN71_RS27340at 6091.339 kb on + strand, within QEN71_RS27340at 6091.339 kb on + strand, within QEN71_RS27340at 6091.339 kb on + strand, within QEN71_RS27340at 6091.340 kb on - strand, within QEN71_RS27340at 6091.340 kb on - strand, within QEN71_RS27340at 6091.340 kb on - strand, within QEN71_RS27340at 6091.340 kb on - strand, within QEN71_RS27340at 6091.340 kb on - strand, within QEN71_RS27340at 6091.340 kb on - strand, within QEN71_RS27340at 6091.483 kb on + strand, within QEN71_RS27340at 6091.483 kb on + strand, within QEN71_RS27340at 6091.483 kb on + strand, within QEN71_RS27340at 6091.484 kb on - strand, within QEN71_RS27340at 6091.484 kb on - strand, within QEN71_RS27340at 6091.484 kb on - strand, within QEN71_RS27340at 6091.484 kb on - strand, within QEN71_RS27340at 6091.484 kb on - strand, within QEN71_RS27340at 6091.484 kb on - strand, within QEN71_RS27340at 6091.670 kb on - strand, within QEN71_RS27340at 6091.670 kb on - strand, within QEN71_RS27340at 6091.802 kb on + strandat 6091.802 kb on + strandat 6091.802 kb on + strandat 6091.803 kb on - strandat 6091.803 kb on - strandat 6091.831 kb on + strandat 6091.880 kb on - strandat 6092.128 kb on + strand, within QEN71_RS27345at 6092.129 kb on - strand, within QEN71_RS27345at 6092.309 kb on - strand, within QEN71_RS27345at 6092.391 kb on - strand, within QEN71_RS27345at 6092.391 kb on - strand, within QEN71_RS27345at 6092.635 kb on + strand, within QEN71_RS27345at 6092.831 kb on + strand, within QEN71_RS27345at 6093.267 kb on + strandat 6093.268 kb on - strandat 6093.268 kb on - strandat 6093.268 kb on - strandat 6093.268 kb on - strandat 6093.268 kb on - strandat 6093.439 kb on - strandat 6093.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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6,091,105 + QEN71_RS27340 0.19 -0.4
6,091,105 + QEN71_RS27340 0.19 +0.3
6,091,105 + QEN71_RS27340 0.19 +0.6
6,091,105 + QEN71_RS27340 0.19 +0.4
6,091,105 + QEN71_RS27340 0.19 -1.0
6,091,106 - QEN71_RS27340 0.19 -0.4
6,091,106 - QEN71_RS27340 0.19 -2.1
6,091,106 - QEN71_RS27340 0.19 -0.2
6,091,106 - QEN71_RS27340 0.19 +0.9
6,091,106 - QEN71_RS27340 0.19 -0.6
6,091,126 + QEN71_RS27340 0.21 +0.1
6,091,126 + QEN71_RS27340 0.21 -0.7
6,091,126 + QEN71_RS27340 0.21 +1.1
6,091,127 - QEN71_RS27340 0.22 +0.2
6,091,127 - QEN71_RS27340 0.22 +0.8
6,091,179 + QEN71_RS27340 0.28 -0.1
6,091,179 + QEN71_RS27340 0.28 -0.3
6,091,180 - QEN71_RS27340 0.28 +0.6
6,091,219 + QEN71_RS27340 0.32 -1.0
6,091,219 + QEN71_RS27340 0.32 +0.1
6,091,219 + QEN71_RS27340 0.32 -1.2
6,091,219 + QEN71_RS27340 0.32 +0.7
6,091,219 + QEN71_RS27340 0.32 -1.0
6,091,219 + QEN71_RS27340 0.32 +0.6
6,091,219 + QEN71_RS27340 0.32 -0.3
6,091,219 + QEN71_RS27340 0.32 -1.2
6,091,220 - QEN71_RS27340 0.32 -0.4
6,091,220 - QEN71_RS27340 0.32 -0.1
6,091,220 - QEN71_RS27340 0.32 -0.1
6,091,220 - QEN71_RS27340 0.32 -0.8
6,091,220 - QEN71_RS27340 0.32 -0.4
6,091,220 - QEN71_RS27340 0.32 -0.7
6,091,220 - QEN71_RS27340 0.32 -1.3
6,091,220 - QEN71_RS27340 0.32 +0.2
6,091,220 - QEN71_RS27340 0.32 +0.1
6,091,220 - QEN71_RS27340 0.32 -0.8
6,091,240 + QEN71_RS27340 0.35 +0.2
6,091,240 + QEN71_RS27340 0.35 +0.1
6,091,240 + QEN71_RS27340 0.35 -0.8
6,091,240 + QEN71_RS27340 0.35 +0.5
6,091,240 + QEN71_RS27340 0.35 -2.4
6,091,240 + QEN71_RS27340 0.35 +0.6
6,091,240 + QEN71_RS27340 0.35 -0.6
6,091,241 - QEN71_RS27340 0.35 -0.2
6,091,241 - QEN71_RS27340 0.35 +0.0
6,091,241 - QEN71_RS27340 0.35 -0.6
6,091,241 - QEN71_RS27340 0.35 +1.1
6,091,241 - QEN71_RS27340 0.35 -0.6
6,091,276 + QEN71_RS27340 0.39 -0.3
6,091,276 + QEN71_RS27340 0.39 +0.2
6,091,339 + QEN71_RS27340 0.46 +0.0
6,091,339 + QEN71_RS27340 0.46 -0.1
6,091,339 + QEN71_RS27340 0.46 -2.4
6,091,340 - QEN71_RS27340 0.46 -0.1
6,091,340 - QEN71_RS27340 0.46 +0.6
6,091,340 - QEN71_RS27340 0.46 -1.9
6,091,340 - QEN71_RS27340 0.46 +0.6
6,091,340 - QEN71_RS27340 0.46 +1.2
6,091,340 - QEN71_RS27340 0.46 -0.8
6,091,483 + QEN71_RS27340 0.63 -0.2
6,091,483 + QEN71_RS27340 0.63 +1.1
6,091,483 + QEN71_RS27340 0.63 +1.1
6,091,484 - QEN71_RS27340 0.63 -2.1
6,091,484 - QEN71_RS27340 0.63 -0.1
6,091,484 - QEN71_RS27340 0.63 -0.5
6,091,484 - QEN71_RS27340 0.63 +0.5
6,091,484 - QEN71_RS27340 0.63 +0.0
6,091,484 - QEN71_RS27340 0.63 -1.1
6,091,670 - QEN71_RS27340 0.84 -0.2
6,091,670 - QEN71_RS27340 0.84 +0.2
6,091,802 + -0.0
6,091,802 + +0.4
6,091,802 + +0.4
6,091,803 - +0.6
6,091,803 - -1.8
6,091,831 + -0.1
6,091,880 - +0.2
6,092,128 + QEN71_RS27345 0.23 -0.6
6,092,129 - QEN71_RS27345 0.23 -1.3
6,092,309 - QEN71_RS27345 0.37 -0.1
6,092,391 - QEN71_RS27345 0.44 -0.1
6,092,391 - QEN71_RS27345 0.44 +0.0
6,092,635 + QEN71_RS27345 0.63 +0.2
6,092,831 + QEN71_RS27345 0.79 -0.1
6,093,267 + -1.7
6,093,268 - +0.7
6,093,268 - +2.2
6,093,268 - +0.1
6,093,268 - +1.9
6,093,268 - -0.2
6,093,439 - +1.4
6,093,439 - -0.8

Or see this region's nucleotide sequence