Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26275

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26265 and QEN71_RS26270 are separated by 19 nucleotidesQEN71_RS26270 and QEN71_RS26275 are separated by 15 nucleotidesQEN71_RS26275 and QEN71_RS26280 are separated by 210 nucleotidesQEN71_RS26280 and QEN71_RS26285 are separated by 211 nucleotidesQEN71_RS26285 and QEN71_RS26290 are separated by 86 nucleotides QEN71_RS26265: QEN71_RS26265 - Tol-Pal system beta propeller repeat protein TolB, at 5,852,544 to 5,853,836 _RS26265 QEN71_RS26270: QEN71_RS26270 - peptidoglycan-associated lipoprotein Pal, at 5,853,856 to 5,854,365 _RS26270 QEN71_RS26275: QEN71_RS26275 - tol-pal system protein YbgF, at 5,854,381 to 5,855,130 _RS26275 QEN71_RS26280: QEN71_RS26280 - tRNA-Lys, at 5,855,341 to 5,855,416 _RS26280 QEN71_RS26285: QEN71_RS26285 - hypothetical protein, at 5,855,628 to 5,855,843 _RS26285 QEN71_RS26290: QEN71_RS26290 - glycosyltransferase, at 5,855,930 to 5,857,090 _RS26290 Position (kb) 5854 5855 5856Strain fitness (log2 ratio) -2 -1 0 1at 5853.827 kb on + strandat 5853.827 kb on + strandat 5853.834 kb on + strandat 5853.834 kb on + strandat 5853.834 kb on + strandat 5853.834 kb on + strandat 5853.834 kb on + strandat 5853.834 kb on + strandat 5854.354 kb on + strandat 5854.354 kb on + strandat 5854.354 kb on + strandat 5854.354 kb on + strandat 5854.363 kb on + strandat 5854.363 kb on + strandat 5854.363 kb on + strandat 5854.363 kb on + strandat 5854.363 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.366 kb on + strandat 5854.380 kb on + strandat 5854.853 kb on - strand, within QEN71_RS26275at 5854.875 kb on + strand, within QEN71_RS26275at 5854.876 kb on - strand, within QEN71_RS26275at 5854.885 kb on + strand, within QEN71_RS26275at 5854.885 kb on + strand, within QEN71_RS26275at 5854.906 kb on + strand, within QEN71_RS26275at 5854.906 kb on + strand, within QEN71_RS26275at 5854.906 kb on + strand, within QEN71_RS26275at 5854.906 kb on + strand, within QEN71_RS26275at 5854.907 kb on - strand, within QEN71_RS26275at 5854.921 kb on + strand, within QEN71_RS26275at 5854.921 kb on + strand, within QEN71_RS26275at 5854.963 kb on + strand, within QEN71_RS26275at 5854.963 kb on + strand, within QEN71_RS26275at 5854.963 kb on + strand, within QEN71_RS26275at 5854.963 kb on + strand, within QEN71_RS26275at 5854.964 kb on - strand, within QEN71_RS26275at 5854.964 kb on - strand, within QEN71_RS26275at 5854.964 kb on - strand, within QEN71_RS26275at 5855.074 kb on + strandat 5855.074 kb on + strandat 5855.074 kb on + strandat 5855.074 kb on + strandat 5855.075 kb on - strandat 5855.140 kb on + strandat 5855.140 kb on + strandat 5855.140 kb on + strandat 5855.141 kb on - strandat 5855.141 kb on - strandat 5855.141 kb on - strandat 5855.176 kb on + strandat 5855.176 kb on + strandat 5855.176 kb on + strandat 5855.176 kb on + strandat 5855.177 kb on - strandat 5855.199 kb on + strandat 5855.199 kb on + strandat 5855.199 kb on + strandat 5855.199 kb on + strandat 5855.454 kb on + strandat 5855.454 kb on + strandat 5855.484 kb on + strandat 5855.485 kb on - strandat 5855.559 kb on + strandat 5855.560 kb on - strandat 5855.564 kb on + strandat 5855.585 kb on - strandat 5855.585 kb on - strandat 5855.615 kb on + strandat 5855.629 kb on + strandat 5855.629 kb on + strandat 5855.699 kb on + strand, within QEN71_RS26285at 5855.699 kb on + strand, within QEN71_RS26285at 5855.700 kb on - strand, within QEN71_RS26285at 5855.715 kb on + strand, within QEN71_RS26285at 5855.715 kb on + strand, within QEN71_RS26285at 5855.716 kb on - strand, within QEN71_RS26285at 5855.813 kb on + strand, within QEN71_RS26285at 5855.813 kb on + strand, within QEN71_RS26285at 5855.850 kb on + strandat 5855.851 kb on - strandat 5855.854 kb on + strandat 5855.854 kb on + strandat 5855.855 kb on - strandat 5855.855 kb on - strandat 5855.868 kb on - strandat 5855.874 kb on + strandat 5855.908 kb on + strandat 5855.915 kb on + strandat 5855.915 kb on + strandat 5855.915 kb on + strandat 5855.959 kb on + strandat 5855.960 kb on - strandat 5855.960 kb on - strandat 5856.011 kb on + strandat 5856.011 kb on + strandat 5856.012 kb on - strandat 5856.012 kb on - strandat 5856.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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5,853,827 + -0.3
5,853,827 + -0.6
5,853,834 + -1.1
5,853,834 + -1.0
5,853,834 + -0.9
5,853,834 + +0.2
5,853,834 + +1.6
5,853,834 + +1.2
5,854,354 + -0.3
5,854,354 + -0.7
5,854,354 + -1.0
5,854,354 + -2.5
5,854,363 + +0.4
5,854,363 + +0.8
5,854,363 + -0.4
5,854,363 + -0.1
5,854,363 + -1.5
5,854,366 + -1.0
5,854,366 + -0.7
5,854,366 + -0.8
5,854,366 + -0.0
5,854,366 + -0.4
5,854,366 + -1.0
5,854,366 + -0.6
5,854,366 + +0.6
5,854,366 + +1.2
5,854,366 + +0.2
5,854,366 + -0.8
5,854,366 + -0.7
5,854,366 + -0.1
5,854,366 + +0.2
5,854,366 + -1.0
5,854,366 + +0.4
5,854,366 + -1.6
5,854,366 + -2.1
5,854,380 + -0.2
5,854,853 - QEN71_RS26275 0.63 +0.6
5,854,875 + QEN71_RS26275 0.66 -0.6
5,854,876 - QEN71_RS26275 0.66 -0.4
5,854,885 + QEN71_RS26275 0.67 -1.7
5,854,885 + QEN71_RS26275 0.67 +0.2
5,854,906 + QEN71_RS26275 0.70 +0.2
5,854,906 + QEN71_RS26275 0.70 -0.7
5,854,906 + QEN71_RS26275 0.70 -0.6
5,854,906 + QEN71_RS26275 0.70 -0.4
5,854,907 - QEN71_RS26275 0.70 +0.6
5,854,921 + QEN71_RS26275 0.72 -1.4
5,854,921 + QEN71_RS26275 0.72 +0.6
5,854,963 + QEN71_RS26275 0.78 -1.4
5,854,963 + QEN71_RS26275 0.78 +0.2
5,854,963 + QEN71_RS26275 0.78 -1.9
5,854,963 + QEN71_RS26275 0.78 -0.4
5,854,964 - QEN71_RS26275 0.78 +0.2
5,854,964 - QEN71_RS26275 0.78 -0.8
5,854,964 - QEN71_RS26275 0.78 +0.4
5,855,074 + -0.7
5,855,074 + -1.4
5,855,074 + -0.8
5,855,074 + -0.1
5,855,075 - +0.8
5,855,140 + -0.4
5,855,140 + -2.1
5,855,140 + -0.6
5,855,141 - -1.6
5,855,141 - -0.3
5,855,141 - -0.8
5,855,176 + +1.1
5,855,176 + -2.0
5,855,176 + +0.0
5,855,176 + -0.3
5,855,177 - -0.8
5,855,199 + -0.1
5,855,199 + -0.1
5,855,199 + -0.4
5,855,199 + +0.2
5,855,454 + +0.3
5,855,454 + -0.9
5,855,484 + +0.2
5,855,485 - +0.7
5,855,559 + +1.2
5,855,560 - +1.7
5,855,564 + -1.1
5,855,585 - -0.6
5,855,585 - +0.8
5,855,615 + -1.7
5,855,629 + -1.3
5,855,629 + -0.2
5,855,699 + QEN71_RS26285 0.33 -0.2
5,855,699 + QEN71_RS26285 0.33 -0.5
5,855,700 - QEN71_RS26285 0.33 -0.5
5,855,715 + QEN71_RS26285 0.40 -0.3
5,855,715 + QEN71_RS26285 0.40 +0.1
5,855,716 - QEN71_RS26285 0.41 +0.1
5,855,813 + QEN71_RS26285 0.86 -0.5
5,855,813 + QEN71_RS26285 0.86 +0.1
5,855,850 + -1.6
5,855,851 - +0.2
5,855,854 + +0.4
5,855,854 + +0.2
5,855,855 - +0.1
5,855,855 - +1.2
5,855,868 - +0.2
5,855,874 + +0.2
5,855,908 + -0.1
5,855,915 + +0.5
5,855,915 + -0.5
5,855,915 + -0.2
5,855,959 + -1.0
5,855,960 - +0.8
5,855,960 - -0.3
5,856,011 + -1.1
5,856,011 + +0.9
5,856,012 - +0.2
5,856,012 - -1.4
5,856,035 + +0.2

Or see this region's nucleotide sequence