Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26020

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26015 and QEN71_RS26020 are separated by 101 nucleotidesQEN71_RS26020 and QEN71_RS26025 are separated by 10 nucleotides QEN71_RS26015: QEN71_RS26015 - efflux transporter outer membrane subunit, at 5,796,613 to 5,798,064 _RS26015 QEN71_RS26020: QEN71_RS26020 - efflux RND transporter periplasmic adaptor subunit, at 5,798,166 to 5,799,317 _RS26020 QEN71_RS26025: QEN71_RS26025 - efflux RND transporter permease subunit, at 5,799,328 to 5,802,387 _RS26025 Position (kb) 5798 5799 5800Strain fitness (log2 ratio) -1 0 1 2at 5797.488 kb on - strand, within QEN71_RS26015at 5797.488 kb on - strand, within QEN71_RS26015at 5797.488 kb on - strand, within QEN71_RS26015at 5797.488 kb on - strand, within QEN71_RS26015at 5797.552 kb on + strand, within QEN71_RS26015at 5797.552 kb on + strand, within QEN71_RS26015at 5797.552 kb on + strand, within QEN71_RS26015at 5797.552 kb on + strand, within QEN71_RS26015at 5797.553 kb on - strand, within QEN71_RS26015at 5797.618 kb on + strand, within QEN71_RS26015at 5797.618 kb on + strand, within QEN71_RS26015at 5797.618 kb on + strand, within QEN71_RS26015at 5797.619 kb on - strand, within QEN71_RS26015at 5797.619 kb on - strand, within QEN71_RS26015at 5797.736 kb on - strand, within QEN71_RS26015at 5797.748 kb on + strand, within QEN71_RS26015at 5797.894 kb on + strand, within QEN71_RS26015at 5797.894 kb on + strand, within QEN71_RS26015at 5797.895 kb on - strand, within QEN71_RS26015at 5797.895 kb on - strand, within QEN71_RS26015at 5797.895 kb on - strand, within QEN71_RS26015at 5797.895 kb on - strand, within QEN71_RS26015at 5798.088 kb on + strandat 5798.089 kb on - strandat 5798.089 kb on - strandat 5798.334 kb on + strand, within QEN71_RS26020at 5798.551 kb on - strand, within QEN71_RS26020at 5798.785 kb on - strand, within QEN71_RS26020at 5798.785 kb on - strand, within QEN71_RS26020at 5798.785 kb on - strand, within QEN71_RS26020at 5798.796 kb on + strand, within QEN71_RS26020at 5798.853 kb on - strand, within QEN71_RS26020at 5798.862 kb on + strand, within QEN71_RS26020at 5798.863 kb on - strand, within QEN71_RS26020at 5798.863 kb on - strand, within QEN71_RS26020at 5798.863 kb on - strand, within QEN71_RS26020at 5798.865 kb on - strand, within QEN71_RS26020at 5798.865 kb on - strand, within QEN71_RS26020at 5798.874 kb on - strand, within QEN71_RS26020at 5798.986 kb on - strand, within QEN71_RS26020at 5798.986 kb on - strand, within QEN71_RS26020at 5798.986 kb on - strand, within QEN71_RS26020at 5799.055 kb on - strand, within QEN71_RS26020at 5799.315 kb on + strandat 5799.316 kb on - strandat 5799.342 kb on + strandat 5799.342 kb on + strandat 5799.362 kb on + strandat 5799.362 kb on + strandat 5799.362 kb on + strandat 5799.478 kb on + strandat 5799.482 kb on - strandat 5799.562 kb on + strandat 5799.562 kb on + strandat 5799.563 kb on - strandat 5799.623 kb on - strandat 5799.623 kb on - strandat 5799.623 kb on - strandat 5799.745 kb on + strand, within QEN71_RS26025at 5799.745 kb on + strand, within QEN71_RS26025at 5799.745 kb on + strand, within QEN71_RS26025at 5799.745 kb on + strand, within QEN71_RS26025at 5799.745 kb on + strand, within QEN71_RS26025at 5799.745 kb on + strand, within QEN71_RS26025at 5799.746 kb on - strand, within QEN71_RS26025at 5799.746 kb on - strand, within QEN71_RS26025at 5799.758 kb on - strand, within QEN71_RS26025at 5799.758 kb on - strand, within QEN71_RS26025at 5799.839 kb on + strand, within QEN71_RS26025at 5799.961 kb on + strand, within QEN71_RS26025at 5799.961 kb on + strand, within QEN71_RS26025at 5799.962 kb on - strand, within QEN71_RS26025at 5799.962 kb on - strand, within QEN71_RS26025at 5799.962 kb on - strand, within QEN71_RS26025at 5800.129 kb on + strand, within QEN71_RS26025at 5800.130 kb on - strand, within QEN71_RS26025

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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5,797,488 - QEN71_RS26015 0.60 -0.8
5,797,488 - QEN71_RS26015 0.60 +0.4
5,797,488 - QEN71_RS26015 0.60 -0.3
5,797,488 - QEN71_RS26015 0.60 -0.7
5,797,552 + QEN71_RS26015 0.65 -0.2
5,797,552 + QEN71_RS26015 0.65 -0.7
5,797,552 + QEN71_RS26015 0.65 -0.1
5,797,552 + QEN71_RS26015 0.65 +0.1
5,797,553 - QEN71_RS26015 0.65 +0.6
5,797,618 + QEN71_RS26015 0.69 -0.5
5,797,618 + QEN71_RS26015 0.69 +0.4
5,797,618 + QEN71_RS26015 0.69 +1.2
5,797,619 - QEN71_RS26015 0.69 +0.9
5,797,619 - QEN71_RS26015 0.69 -0.6
5,797,736 - QEN71_RS26015 0.77 +0.5
5,797,748 + QEN71_RS26015 0.78 +1.2
5,797,894 + QEN71_RS26015 0.88 -0.9
5,797,894 + QEN71_RS26015 0.88 -0.6
5,797,895 - QEN71_RS26015 0.88 -1.1
5,797,895 - QEN71_RS26015 0.88 +2.3
5,797,895 - QEN71_RS26015 0.88 -0.7
5,797,895 - QEN71_RS26015 0.88 -0.7
5,798,088 + +0.9
5,798,089 - -0.1
5,798,089 - -0.9
5,798,334 + QEN71_RS26020 0.15 -0.3
5,798,551 - QEN71_RS26020 0.33 -0.3
5,798,785 - QEN71_RS26020 0.54 -0.4
5,798,785 - QEN71_RS26020 0.54 +0.3
5,798,785 - QEN71_RS26020 0.54 -0.4
5,798,796 + QEN71_RS26020 0.55 +0.1
5,798,853 - QEN71_RS26020 0.60 -0.2
5,798,862 + QEN71_RS26020 0.60 -0.8
5,798,863 - QEN71_RS26020 0.61 +0.5
5,798,863 - QEN71_RS26020 0.61 -0.6
5,798,863 - QEN71_RS26020 0.61 +1.1
5,798,865 - QEN71_RS26020 0.61 -0.0
5,798,865 - QEN71_RS26020 0.61 -0.6
5,798,874 - QEN71_RS26020 0.61 -0.2
5,798,986 - QEN71_RS26020 0.71 +0.6
5,798,986 - QEN71_RS26020 0.71 -0.6
5,798,986 - QEN71_RS26020 0.71 +1.1
5,799,055 - QEN71_RS26020 0.77 -0.5
5,799,315 + +0.4
5,799,316 - -0.5
5,799,342 + +0.2
5,799,342 + -0.6
5,799,362 + -0.9
5,799,362 + +0.4
5,799,362 + -0.6
5,799,478 + -0.2
5,799,482 - +0.3
5,799,562 + +0.6
5,799,562 + +0.6
5,799,563 - -0.4
5,799,623 - -0.6
5,799,623 - +1.2
5,799,623 - -0.7
5,799,745 + QEN71_RS26025 0.14 -0.0
5,799,745 + QEN71_RS26025 0.14 +2.2
5,799,745 + QEN71_RS26025 0.14 +0.3
5,799,745 + QEN71_RS26025 0.14 +0.1
5,799,745 + QEN71_RS26025 0.14 -0.4
5,799,745 + QEN71_RS26025 0.14 +0.8
5,799,746 - QEN71_RS26025 0.14 -1.3
5,799,746 - QEN71_RS26025 0.14 -0.3
5,799,758 - QEN71_RS26025 0.14 +0.8
5,799,758 - QEN71_RS26025 0.14 +1.4
5,799,839 + QEN71_RS26025 0.17 -1.4
5,799,961 + QEN71_RS26025 0.21 -0.2
5,799,961 + QEN71_RS26025 0.21 -0.5
5,799,962 - QEN71_RS26025 0.21 +0.6
5,799,962 - QEN71_RS26025 0.21 -1.0
5,799,962 - QEN71_RS26025 0.21 +0.1
5,800,129 + QEN71_RS26025 0.26 -1.0
5,800,130 - QEN71_RS26025 0.26 -1.0

Or see this region's nucleotide sequence