Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25430

Experiment: LB_noSalt with Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS25420 and QEN71_RS25425 overlap by 4 nucleotidesQEN71_RS25425 and QEN71_RS25430 are separated by 30 nucleotidesQEN71_RS25430 and QEN71_RS25435 are separated by 11 nucleotides QEN71_RS25420: QEN71_RS25420 - oligosaccharide flippase family protein, at 5,654,479 to 5,655,741 _RS25420 QEN71_RS25425: QEN71_RS25425 - glycosyltransferase, at 5,655,738 to 5,656,586 _RS25425 QEN71_RS25430: QEN71_RS25430 - glycosyltransferase family 4 protein, at 5,656,617 to 5,657,789 _RS25430 QEN71_RS25435: QEN71_RS25435 - UDP-glucose 4-epimerase GalE, at 5,657,801 to 5,658,823 _RS25435 Position (kb) 5656 5657 5658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5655.715 kb on + strandat 5655.715 kb on + strandat 5655.716 kb on - strandat 5655.716 kb on - strandat 5655.716 kb on - strandat 5655.724 kb on + strandat 5655.819 kb on + strandat 5655.820 kb on - strandat 5656.287 kb on + strand, within QEN71_RS25425at 5656.287 kb on + strand, within QEN71_RS25425at 5656.299 kb on + strand, within QEN71_RS25425at 5656.299 kb on + strand, within QEN71_RS25425at 5656.300 kb on - strand, within QEN71_RS25425at 5656.347 kb on + strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.381 kb on - strand, within QEN71_RS25425at 5656.384 kb on - strand, within QEN71_RS25425at 5656.461 kb on + strand, within QEN71_RS25425at 5656.475 kb on + strand, within QEN71_RS25425at 5656.531 kb on - strandat 5656.564 kb on - strandat 5656.564 kb on - strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.686 kb on + strandat 5656.687 kb on - strandat 5656.687 kb on - strandat 5656.908 kb on + strand, within QEN71_RS25430at 5656.909 kb on - strand, within QEN71_RS25430at 5656.925 kb on + strand, within QEN71_RS25430at 5656.925 kb on + strand, within QEN71_RS25430at 5656.926 kb on - strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.929 kb on + strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.930 kb on - strand, within QEN71_RS25430at 5656.993 kb on - strand, within QEN71_RS25430at 5657.000 kb on + strand, within QEN71_RS25430at 5657.071 kb on + strand, within QEN71_RS25430at 5657.072 kb on - strand, within QEN71_RS25430at 5657.072 kb on - strand, within QEN71_RS25430at 5657.246 kb on - strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.248 kb on + strand, within QEN71_RS25430at 5657.249 kb on - strand, within QEN71_RS25430at 5657.249 kb on - strand, within QEN71_RS25430at 5657.270 kb on + strand, within QEN71_RS25430at 5657.286 kb on + strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.287 kb on - strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.319 kb on + strand, within QEN71_RS25430at 5657.320 kb on - strand, within QEN71_RS25430at 5657.320 kb on - strand, within QEN71_RS25430at 5657.424 kb on + strand, within QEN71_RS25430at 5657.424 kb on + strand, within QEN71_RS25430at 5657.425 kb on - strand, within QEN71_RS25430at 5657.425 kb on - strand, within QEN71_RS25430at 5657.491 kb on - strand, within QEN71_RS25430at 5657.606 kb on - strand, within QEN71_RS25430at 5657.606 kb on - strand, within QEN71_RS25430at 5657.618 kb on + strand, within QEN71_RS25430at 5657.618 kb on + strand, within QEN71_RS25430at 5657.623 kb on + strand, within QEN71_RS25430at 5657.624 kb on - strand, within QEN71_RS25430at 5657.624 kb on - strand, within QEN71_RS25430at 5657.660 kb on + strand, within QEN71_RS25430at 5657.660 kb on + strand, within QEN71_RS25430at 5657.661 kb on - strand, within QEN71_RS25430at 5657.748 kb on + strandat 5657.748 kb on + strandat 5657.779 kb on + strandat 5657.779 kb on + strandat 5657.780 kb on - strandat 5657.788 kb on - strandat 5657.845 kb on + strandat 5657.879 kb on - strandat 5657.885 kb on + strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5657.886 kb on - strandat 5658.102 kb on - strand, within QEN71_RS25435at 5658.102 kb on - strand, within QEN71_RS25435at 5658.112 kb on + strand, within QEN71_RS25435at 5658.112 kb on + strand, within QEN71_RS25435at 5658.112 kb on + strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.113 kb on - strand, within QEN71_RS25435at 5658.194 kb on + strand, within QEN71_RS25435at 5658.194 kb on + strand, within QEN71_RS25435at 5658.195 kb on - strand, within QEN71_RS25435at 5658.195 kb on - strand, within QEN71_RS25435at 5658.195 kb on - strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.416 kb on + strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.417 kb on - strand, within QEN71_RS25435at 5658.473 kb on + strand, within QEN71_RS25435at 5658.474 kb on - strand, within QEN71_RS25435at 5658.474 kb on - strand, within QEN71_RS25435at 5658.474 kb on - strand, within QEN71_RS25435at 5658.478 kb on + strand, within QEN71_RS25435at 5658.478 kb on + strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.479 kb on - strand, within QEN71_RS25435at 5658.506 kb on + strand, within QEN71_RS25435at 5658.506 kb on + strand, within QEN71_RS25435at 5658.506 kb on + strand, within QEN71_RS25435at 5658.507 kb on - strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.538 kb on + strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.539 kb on - strand, within QEN71_RS25435at 5658.608 kb on + strand, within QEN71_RS25435at 5658.608 kb on + strand, within QEN71_RS25435at 5658.608 kb on + strand, within QEN71_RS25435at 5658.609 kb on - strand, within QEN71_RS25435at 5658.609 kb on - strand, within QEN71_RS25435at 5658.610 kb on + strand, within QEN71_RS25435at 5658.611 kb on - strand, within QEN71_RS25435at 5658.665 kb on + strand, within QEN71_RS25435at 5658.755 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
remove
5,655,715 + -0.1
5,655,715 + +0.2
5,655,716 - -1.5
5,655,716 - -1.5
5,655,716 - -0.6
5,655,724 + +0.9
5,655,819 + +1.5
5,655,820 - -2.4
5,656,287 + QEN71_RS25425 0.65 -0.8
5,656,287 + QEN71_RS25425 0.65 -2.0
5,656,299 + QEN71_RS25425 0.66 +0.2
5,656,299 + QEN71_RS25425 0.66 -1.1
5,656,300 - QEN71_RS25425 0.66 -1.8
5,656,347 + QEN71_RS25425 0.72 -0.4
5,656,381 - QEN71_RS25425 0.76 +0.5
5,656,381 - QEN71_RS25425 0.76 -0.2
5,656,381 - QEN71_RS25425 0.76 -2.5
5,656,381 - QEN71_RS25425 0.76 -2.0
5,656,384 - QEN71_RS25425 0.76 -0.9
5,656,461 + QEN71_RS25425 0.85 +0.2
5,656,475 + QEN71_RS25425 0.87 -1.2
5,656,531 - -0.8
5,656,564 - -0.4
5,656,564 - +0.4
5,656,686 + -0.1
5,656,686 + -1.4
5,656,686 + +0.3
5,656,686 + +1.2
5,656,686 + -3.6
5,656,687 - -1.4
5,656,687 - -1.6
5,656,908 + QEN71_RS25430 0.25 -0.4
5,656,909 - QEN71_RS25430 0.25 -0.4
5,656,925 + QEN71_RS25430 0.26 -0.8
5,656,925 + QEN71_RS25430 0.26 -1.0
5,656,926 - QEN71_RS25430 0.26 -0.6
5,656,929 + QEN71_RS25430 0.27 -2.5
5,656,929 + QEN71_RS25430 0.27 -3.0
5,656,929 + QEN71_RS25430 0.27 +0.8
5,656,929 + QEN71_RS25430 0.27 +0.2
5,656,929 + QEN71_RS25430 0.27 +0.3
5,656,929 + QEN71_RS25430 0.27 -0.8
5,656,929 + QEN71_RS25430 0.27 -0.3
5,656,930 - QEN71_RS25430 0.27 -1.0
5,656,930 - QEN71_RS25430 0.27 -2.1
5,656,930 - QEN71_RS25430 0.27 -1.7
5,656,930 - QEN71_RS25430 0.27 -1.9
5,656,930 - QEN71_RS25430 0.27 +0.3
5,656,930 - QEN71_RS25430 0.27 -1.0
5,656,993 - QEN71_RS25430 0.32 +1.2
5,657,000 + QEN71_RS25430 0.33 -0.8
5,657,071 + QEN71_RS25430 0.39 -1.1
5,657,072 - QEN71_RS25430 0.39 -2.1
5,657,072 - QEN71_RS25430 0.39 -0.5
5,657,246 - QEN71_RS25430 0.54 -0.8
5,657,248 + QEN71_RS25430 0.54 -0.6
5,657,248 + QEN71_RS25430 0.54 +0.2
5,657,248 + QEN71_RS25430 0.54 -0.8
5,657,248 + QEN71_RS25430 0.54 +0.3
5,657,249 - QEN71_RS25430 0.54 -1.5
5,657,249 - QEN71_RS25430 0.54 -1.4
5,657,270 + QEN71_RS25430 0.56 -1.2
5,657,286 + QEN71_RS25430 0.57 -0.4
5,657,287 - QEN71_RS25430 0.57 -1.3
5,657,287 - QEN71_RS25430 0.57 -0.1
5,657,287 - QEN71_RS25430 0.57 +0.5
5,657,319 + QEN71_RS25430 0.60 -0.0
5,657,319 + QEN71_RS25430 0.60 +1.2
5,657,319 + QEN71_RS25430 0.60 -0.7
5,657,319 + QEN71_RS25430 0.60 -0.8
5,657,319 + QEN71_RS25430 0.60 +0.2
5,657,319 + QEN71_RS25430 0.60 -1.1
5,657,319 + QEN71_RS25430 0.60 -1.8
5,657,319 + QEN71_RS25430 0.60 +1.2
5,657,319 + QEN71_RS25430 0.60 +0.6
5,657,319 + QEN71_RS25430 0.60 -0.4
5,657,319 + QEN71_RS25430 0.60 -1.5
5,657,319 + QEN71_RS25430 0.60 -1.9
5,657,319 + QEN71_RS25430 0.60 -0.9
5,657,320 - QEN71_RS25430 0.60 -2.2
5,657,320 - QEN71_RS25430 0.60 -0.6
5,657,424 + QEN71_RS25430 0.69 -1.0
5,657,424 + QEN71_RS25430 0.69 -0.1
5,657,425 - QEN71_RS25430 0.69 +0.2
5,657,425 - QEN71_RS25430 0.69 -0.1
5,657,491 - QEN71_RS25430 0.75 +0.1
5,657,606 - QEN71_RS25430 0.84 -2.1
5,657,606 - QEN71_RS25430 0.84 +0.0
5,657,618 + QEN71_RS25430 0.85 -1.7
5,657,618 + QEN71_RS25430 0.85 -1.6
5,657,623 + QEN71_RS25430 0.86 +0.1
5,657,624 - QEN71_RS25430 0.86 -1.9
5,657,624 - QEN71_RS25430 0.86 -1.0
5,657,660 + QEN71_RS25430 0.89 +0.1
5,657,660 + QEN71_RS25430 0.89 -1.0
5,657,661 - QEN71_RS25430 0.89 -1.7
5,657,748 + -1.0
5,657,748 + -2.5
5,657,779 + -1.0
5,657,779 + -0.6
5,657,780 - +0.9
5,657,788 - +0.3
5,657,845 + -0.6
5,657,879 - +1.8
5,657,885 + -0.5
5,657,886 - +1.1
5,657,886 - -1.1
5,657,886 - +1.9
5,657,886 - -0.5
5,657,886 - -2.7
5,657,886 - -1.2
5,658,102 - QEN71_RS25435 0.29 -0.2
5,658,102 - QEN71_RS25435 0.29 -1.2
5,658,112 + QEN71_RS25435 0.30 -0.7
5,658,112 + QEN71_RS25435 0.30 +0.2
5,658,112 + QEN71_RS25435 0.30 -0.2
5,658,113 - QEN71_RS25435 0.30 -0.3
5,658,113 - QEN71_RS25435 0.30 -0.1
5,658,113 - QEN71_RS25435 0.30 +0.5
5,658,113 - QEN71_RS25435 0.30 -0.3
5,658,194 + QEN71_RS25435 0.38 -1.6
5,658,194 + QEN71_RS25435 0.38 -0.0
5,658,195 - QEN71_RS25435 0.39 +0.2
5,658,195 - QEN71_RS25435 0.39 -1.1
5,658,195 - QEN71_RS25435 0.39 -0.6
5,658,416 + QEN71_RS25435 0.60 -0.8
5,658,416 + QEN71_RS25435 0.60 -2.0
5,658,416 + QEN71_RS25435 0.60 -2.0
5,658,416 + QEN71_RS25435 0.60 +1.5
5,658,417 - QEN71_RS25435 0.60 +0.6
5,658,417 - QEN71_RS25435 0.60 -1.3
5,658,417 - QEN71_RS25435 0.60 +0.6
5,658,417 - QEN71_RS25435 0.60 -1.4
5,658,417 - QEN71_RS25435 0.60 -0.4
5,658,417 - QEN71_RS25435 0.60 -0.8
5,658,473 + QEN71_RS25435 0.66 -0.7
5,658,474 - QEN71_RS25435 0.66 +0.1
5,658,474 - QEN71_RS25435 0.66 -0.6
5,658,474 - QEN71_RS25435 0.66 +0.9
5,658,478 + QEN71_RS25435 0.66 -0.5
5,658,478 + QEN71_RS25435 0.66 +1.2
5,658,479 - QEN71_RS25435 0.66 +2.8
5,658,479 - QEN71_RS25435 0.66 -1.4
5,658,479 - QEN71_RS25435 0.66 -2.5
5,658,479 - QEN71_RS25435 0.66 -0.5
5,658,479 - QEN71_RS25435 0.66 -0.1
5,658,479 - QEN71_RS25435 0.66 -0.8
5,658,479 - QEN71_RS25435 0.66 -0.2
5,658,506 + QEN71_RS25435 0.69 +0.1
5,658,506 + QEN71_RS25435 0.69 +1.0
5,658,506 + QEN71_RS25435 0.69 -0.6
5,658,507 - QEN71_RS25435 0.69 -1.6
5,658,538 + QEN71_RS25435 0.72 -1.5
5,658,538 + QEN71_RS25435 0.72 -1.6
5,658,538 + QEN71_RS25435 0.72 +0.3
5,658,538 + QEN71_RS25435 0.72 -1.8
5,658,539 - QEN71_RS25435 0.72 -0.9
5,658,539 - QEN71_RS25435 0.72 -2.6
5,658,539 - QEN71_RS25435 0.72 -1.1
5,658,539 - QEN71_RS25435 0.72 -1.6
5,658,539 - QEN71_RS25435 0.72 -2.2
5,658,539 - QEN71_RS25435 0.72 +1.1
5,658,608 + QEN71_RS25435 0.79 -0.3
5,658,608 + QEN71_RS25435 0.79 -0.8
5,658,608 + QEN71_RS25435 0.79 +0.3
5,658,609 - QEN71_RS25435 0.79 -1.1
5,658,609 - QEN71_RS25435 0.79 -0.2
5,658,610 + QEN71_RS25435 0.79 -0.9
5,658,611 - QEN71_RS25435 0.79 -3.0
5,658,665 + QEN71_RS25435 0.84 +0.5
5,658,755 + -0.5

Or see this region's nucleotide sequence