Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21530

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21525 and QEN71_RS21530 overlap by 11 nucleotidesQEN71_RS21530 and QEN71_RS21535 overlap by 4 nucleotides QEN71_RS21525: QEN71_RS21525 - hypothetical protein, at 4,767,795 to 4,769,300 _RS21525 QEN71_RS21530: QEN71_RS21530 - aspartate aminotransferase family protein, at 4,769,290 to 4,770,549 _RS21530 QEN71_RS21535: QEN71_RS21535 - EamA family transporter RarD, at 4,770,546 to 4,771,640 _RS21535 Position (kb) 4769 4770 4771Strain fitness (log2 ratio) -2 -1 0 1 2at 4768.323 kb on + strand, within QEN71_RS21525at 4768.324 kb on - strand, within QEN71_RS21525at 4768.485 kb on + strand, within QEN71_RS21525at 4768.485 kb on + strand, within QEN71_RS21525at 4768.485 kb on + strand, within QEN71_RS21525at 4768.485 kb on + strand, within QEN71_RS21525at 4768.485 kb on + strand, within QEN71_RS21525at 4768.654 kb on - strand, within QEN71_RS21525at 4768.654 kb on - strand, within QEN71_RS21525at 4768.654 kb on - strand, within QEN71_RS21525at 4768.696 kb on + strand, within QEN71_RS21525at 4768.707 kb on + strand, within QEN71_RS21525at 4768.708 kb on - strand, within QEN71_RS21525at 4768.708 kb on - strand, within QEN71_RS21525at 4768.719 kb on + strand, within QEN71_RS21525at 4768.821 kb on + strand, within QEN71_RS21525at 4768.917 kb on + strand, within QEN71_RS21525at 4768.918 kb on - strand, within QEN71_RS21525at 4768.919 kb on + strand, within QEN71_RS21525at 4768.919 kb on + strand, within QEN71_RS21525at 4768.920 kb on - strand, within QEN71_RS21525at 4768.920 kb on - strand, within QEN71_RS21525at 4768.929 kb on + strand, within QEN71_RS21525at 4768.930 kb on - strand, within QEN71_RS21525at 4769.235 kb on + strandat 4769.236 kb on - strandat 4769.236 kb on - strandat 4769.344 kb on + strandat 4769.407 kb on + strandat 4769.407 kb on + strandat 4769.407 kb on + strandat 4769.407 kb on + strandat 4769.407 kb on + strandat 4769.983 kb on + strand, within QEN71_RS21530at 4770.585 kb on + strandat 4770.633 kb on + strandat 4770.633 kb on + strandat 4770.633 kb on + strandat 4770.633 kb on + strandat 4770.633 kb on + strandat 4770.633 kb on + strandat 4770.633 kb on + strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.634 kb on - strandat 4770.636 kb on + strandat 4770.636 kb on + strandat 4770.637 kb on - strandat 4770.637 kb on - strandat 4770.637 kb on - strandat 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.816 kb on + strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.817 kb on - strand, within QEN71_RS21535at 4770.819 kb on - strand, within QEN71_RS21535at 4770.819 kb on - strand, within QEN71_RS21535at 4770.839 kb on + strand, within QEN71_RS21535at 4771.085 kb on + strand, within QEN71_RS21535at 4771.085 kb on + strand, within QEN71_RS21535at 4771.085 kb on + strand, within QEN71_RS21535at 4771.085 kb on + strand, within QEN71_RS21535at 4771.085 kb on + strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.086 kb on - strand, within QEN71_RS21535at 4771.128 kb on + strand, within QEN71_RS21535at 4771.129 kb on - strand, within QEN71_RS21535at 4771.173 kb on + strand, within QEN71_RS21535at 4771.239 kb on + strand, within QEN71_RS21535at 4771.240 kb on - strand, within QEN71_RS21535at 4771.290 kb on + strand, within QEN71_RS21535at 4771.290 kb on + strand, within QEN71_RS21535at 4771.290 kb on + strand, within QEN71_RS21535at 4771.290 kb on + strand, within QEN71_RS21535at 4771.290 kb on + strand, within QEN71_RS21535at 4771.290 kb on + strand, within QEN71_RS21535at 4771.291 kb on - strand, within QEN71_RS21535at 4771.291 kb on - strand, within QEN71_RS21535at 4771.291 kb on - strand, within QEN71_RS21535at 4771.404 kb on + strand, within QEN71_RS21535at 4771.404 kb on + strand, within QEN71_RS21535at 4771.405 kb on - strand, within QEN71_RS21535at 4771.405 kb on - strand, within QEN71_RS21535at 4771.405 kb on - strand, within QEN71_RS21535

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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4,768,323 + QEN71_RS21525 0.35 +0.2
4,768,324 - QEN71_RS21525 0.35 -0.5
4,768,485 + QEN71_RS21525 0.46 -0.1
4,768,485 + QEN71_RS21525 0.46 +0.2
4,768,485 + QEN71_RS21525 0.46 -0.3
4,768,485 + QEN71_RS21525 0.46 -0.2
4,768,485 + QEN71_RS21525 0.46 -1.0
4,768,654 - QEN71_RS21525 0.57 -1.2
4,768,654 - QEN71_RS21525 0.57 -0.2
4,768,654 - QEN71_RS21525 0.57 -0.2
4,768,696 + QEN71_RS21525 0.60 +0.4
4,768,707 + QEN71_RS21525 0.61 -0.8
4,768,708 - QEN71_RS21525 0.61 +1.5
4,768,708 - QEN71_RS21525 0.61 +2.5
4,768,719 + QEN71_RS21525 0.61 -0.1
4,768,821 + QEN71_RS21525 0.68 +0.3
4,768,917 + QEN71_RS21525 0.75 -0.1
4,768,918 - QEN71_RS21525 0.75 -0.5
4,768,919 + QEN71_RS21525 0.75 +0.9
4,768,919 + QEN71_RS21525 0.75 -0.8
4,768,920 - QEN71_RS21525 0.75 +1.8
4,768,920 - QEN71_RS21525 0.75 +0.7
4,768,929 + QEN71_RS21525 0.75 -0.5
4,768,930 - QEN71_RS21525 0.75 +0.2
4,769,235 + +0.7
4,769,236 - -0.1
4,769,236 - +0.3
4,769,344 + +0.2
4,769,407 + +0.2
4,769,407 + -0.3
4,769,407 + -2.0
4,769,407 + -1.0
4,769,407 + +0.7
4,769,983 + QEN71_RS21530 0.55 -2.1
4,770,585 + +0.1
4,770,633 + -0.8
4,770,633 + -1.4
4,770,633 + -0.1
4,770,633 + -0.6
4,770,633 + +0.9
4,770,633 + -1.1
4,770,633 + +1.1
4,770,634 - +1.2
4,770,634 - -0.3
4,770,634 - +1.4
4,770,634 - +0.2
4,770,634 - -1.1
4,770,634 - +1.0
4,770,634 - +0.3
4,770,634 - -0.4
4,770,636 + +0.3
4,770,636 + -0.3
4,770,637 - -1.5
4,770,637 - -1.0
4,770,637 - +0.0
4,770,816 + QEN71_RS21535 0.25 -0.6
4,770,816 + QEN71_RS21535 0.25 -0.5
4,770,816 + QEN71_RS21535 0.25 -0.9
4,770,816 + QEN71_RS21535 0.25 -0.9
4,770,816 + QEN71_RS21535 0.25 -1.5
4,770,816 + QEN71_RS21535 0.25 +1.8
4,770,816 + QEN71_RS21535 0.25 -0.6
4,770,816 + QEN71_RS21535 0.25 +1.4
4,770,816 + QEN71_RS21535 0.25 -0.4
4,770,816 + QEN71_RS21535 0.25 +0.3
4,770,816 + QEN71_RS21535 0.25 -2.0
4,770,816 + QEN71_RS21535 0.25 -0.9
4,770,816 + QEN71_RS21535 0.25 -0.1
4,770,816 + QEN71_RS21535 0.25 +0.0
4,770,817 - QEN71_RS21535 0.25 -0.1
4,770,817 - QEN71_RS21535 0.25 +0.9
4,770,817 - QEN71_RS21535 0.25 +0.2
4,770,817 - QEN71_RS21535 0.25 -0.5
4,770,817 - QEN71_RS21535 0.25 -0.7
4,770,817 - QEN71_RS21535 0.25 -0.3
4,770,817 - QEN71_RS21535 0.25 -0.5
4,770,817 - QEN71_RS21535 0.25 +0.7
4,770,817 - QEN71_RS21535 0.25 -0.4
4,770,817 - QEN71_RS21535 0.25 -0.1
4,770,817 - QEN71_RS21535 0.25 +0.0
4,770,817 - QEN71_RS21535 0.25 +0.6
4,770,819 - QEN71_RS21535 0.25 +1.0
4,770,819 - QEN71_RS21535 0.25 +0.5
4,770,839 + QEN71_RS21535 0.27 -1.1
4,771,085 + QEN71_RS21535 0.49 -0.4
4,771,085 + QEN71_RS21535 0.49 +1.4
4,771,085 + QEN71_RS21535 0.49 -1.8
4,771,085 + QEN71_RS21535 0.49 +0.4
4,771,085 + QEN71_RS21535 0.49 -1.3
4,771,086 - QEN71_RS21535 0.49 +0.1
4,771,086 - QEN71_RS21535 0.49 +1.8
4,771,086 - QEN71_RS21535 0.49 +0.5
4,771,086 - QEN71_RS21535 0.49 -0.4
4,771,086 - QEN71_RS21535 0.49 -0.6
4,771,086 - QEN71_RS21535 0.49 -0.8
4,771,086 - QEN71_RS21535 0.49 -2.5
4,771,128 + QEN71_RS21535 0.53 -1.2
4,771,129 - QEN71_RS21535 0.53 +0.1
4,771,173 + QEN71_RS21535 0.57 +0.3
4,771,239 + QEN71_RS21535 0.63 -0.2
4,771,240 - QEN71_RS21535 0.63 -1.1
4,771,290 + QEN71_RS21535 0.68 +1.3
4,771,290 + QEN71_RS21535 0.68 +1.3
4,771,290 + QEN71_RS21535 0.68 +0.2
4,771,290 + QEN71_RS21535 0.68 +0.1
4,771,290 + QEN71_RS21535 0.68 +0.2
4,771,290 + QEN71_RS21535 0.68 +0.8
4,771,291 - QEN71_RS21535 0.68 +0.2
4,771,291 - QEN71_RS21535 0.68 -0.2
4,771,291 - QEN71_RS21535 0.68 +0.6
4,771,404 + QEN71_RS21535 0.78 +0.6
4,771,404 + QEN71_RS21535 0.78 -1.4
4,771,405 - QEN71_RS21535 0.78 -2.2
4,771,405 - QEN71_RS21535 0.78 +0.2
4,771,405 - QEN71_RS21535 0.78 +0.9

Or see this region's nucleotide sequence