Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21050

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21040 and QEN71_RS21045 are separated by 211 nucleotidesQEN71_RS21045 and QEN71_RS21050 are separated by 106 nucleotidesQEN71_RS21050 and QEN71_RS21055 are separated by 39 nucleotides QEN71_RS21040: QEN71_RS21040 - response regulator, at 4,668,411 to 4,668,794 _RS21040 QEN71_RS21045: QEN71_RS21045 - BON domain-containing protein, at 4,669,006 to 4,669,395 _RS21045 QEN71_RS21050: QEN71_RS21050 - DUF3331 domain-containing protein, at 4,669,502 to 4,669,951 _RS21050 QEN71_RS21055: QEN71_RS21055 - amidase family protein, at 4,669,991 to 4,671,391 _RS21055 Position (kb) 4669 4670Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4668.663 kb on + strand, within QEN71_RS21040at 4668.663 kb on + strand, within QEN71_RS21040at 4668.664 kb on - strand, within QEN71_RS21040at 4668.664 kb on - strand, within QEN71_RS21040at 4668.664 kb on - strand, within QEN71_RS21040at 4668.916 kb on + strandat 4668.916 kb on + strandat 4668.917 kb on - strandat 4668.931 kb on + strandat 4669.471 kb on + strandat 4669.472 kb on - strandat 4669.473 kb on + strandat 4669.473 kb on + strandat 4669.473 kb on + strandat 4669.496 kb on - strandat 4669.496 kb on - strandat 4669.521 kb on + strandat 4669.521 kb on + strandat 4669.534 kb on + strandat 4669.687 kb on + strand, within QEN71_RS21050at 4669.688 kb on - strand, within QEN71_RS21050at 4669.771 kb on - strand, within QEN71_RS21050at 4669.875 kb on + strand, within QEN71_RS21050at 4669.875 kb on + strand, within QEN71_RS21050at 4670.001 kb on + strandat 4670.001 kb on + strandat 4670.002 kb on - strandat 4670.543 kb on + strand, within QEN71_RS21055at 4670.727 kb on - strand, within QEN71_RS21055at 4670.727 kb on - strand, within QEN71_RS21055at 4670.727 kb on - strand, within QEN71_RS21055

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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4,668,663 + QEN71_RS21040 0.66 +3.2
4,668,663 + QEN71_RS21040 0.66 +3.2
4,668,664 - QEN71_RS21040 0.66 -0.4
4,668,664 - QEN71_RS21040 0.66 -1.3
4,668,664 - QEN71_RS21040 0.66 +0.3
4,668,916 + +3.4
4,668,916 + +3.2
4,668,917 - -1.0
4,668,931 + +3.2
4,669,471 + +1.4
4,669,472 - -0.1
4,669,473 + +2.5
4,669,473 + +2.0
4,669,473 + +1.6
4,669,496 - +2.9
4,669,496 - +0.2
4,669,521 + +0.9
4,669,521 + +0.1
4,669,534 + -1.0
4,669,687 + QEN71_RS21050 0.41 -1.2
4,669,688 - QEN71_RS21050 0.41 -1.1
4,669,771 - QEN71_RS21050 0.60 -0.0
4,669,875 + QEN71_RS21050 0.83 -3.1
4,669,875 + QEN71_RS21050 0.83 -1.0
4,670,001 + -0.6
4,670,001 + -0.6
4,670,002 - +0.2
4,670,543 + QEN71_RS21055 0.39 +2.0
4,670,727 - QEN71_RS21055 0.53 +0.2
4,670,727 - QEN71_RS21055 0.53 +0.6
4,670,727 - QEN71_RS21055 0.53 +0.7

Or see this region's nucleotide sequence