Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS20260

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS20255 and QEN71_RS20260 are separated by 81 nucleotidesQEN71_RS20260 and QEN71_RS20265 are separated by 347 nucleotides QEN71_RS20255: QEN71_RS20255 - response regulator transcription factor, at 4,506,465 to 4,507,190 _RS20255 QEN71_RS20260: QEN71_RS20260 - dihydrodipicolinate synthase family protein, at 4,507,272 to 4,508,177 _RS20260 QEN71_RS20265: QEN71_RS20265 - 4-hydroxyproline epimerase, at 4,508,525 to 4,509,490 _RS20265 Position (kb) 4507 4508 4509Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4506.353 kb on + strandat 4506.353 kb on + strandat 4506.353 kb on + strandat 4506.354 kb on - strandat 4506.400 kb on + strandat 4506.401 kb on - strandat 4506.401 kb on - strandat 4506.408 kb on + strandat 4506.408 kb on + strandat 4506.409 kb on - strandat 4506.414 kb on + strandat 4506.471 kb on - strandat 4506.471 kb on - strandat 4506.550 kb on + strand, within QEN71_RS20255at 4506.551 kb on - strand, within QEN71_RS20255at 4506.551 kb on - strand, within QEN71_RS20255at 4506.552 kb on + strand, within QEN71_RS20255at 4506.552 kb on + strand, within QEN71_RS20255at 4506.552 kb on + strand, within QEN71_RS20255at 4506.553 kb on - strand, within QEN71_RS20255at 4506.694 kb on + strand, within QEN71_RS20255at 4506.694 kb on + strand, within QEN71_RS20255at 4506.743 kb on - strand, within QEN71_RS20255at 4506.759 kb on + strand, within QEN71_RS20255at 4506.760 kb on - strand, within QEN71_RS20255at 4506.760 kb on - strand, within QEN71_RS20255at 4506.760 kb on - strand, within QEN71_RS20255at 4506.760 kb on - strand, within QEN71_RS20255at 4506.867 kb on + strand, within QEN71_RS20255at 4507.116 kb on + strand, within QEN71_RS20255at 4507.117 kb on - strand, within QEN71_RS20255at 4507.117 kb on - strand, within QEN71_RS20255at 4507.118 kb on + strandat 4507.118 kb on + strandat 4507.118 kb on + strandat 4507.119 kb on - strandat 4507.119 kb on - strandat 4507.119 kb on - strandat 4507.119 kb on - strandat 4507.119 kb on - strandat 4507.119 kb on - strandat 4507.119 kb on - strandat 4507.471 kb on + strand, within QEN71_RS20260at 4507.472 kb on - strand, within QEN71_RS20260at 4507.516 kb on + strand, within QEN71_RS20260at 4507.516 kb on + strand, within QEN71_RS20260at 4507.517 kb on - strand, within QEN71_RS20260at 4507.517 kb on - strand, within QEN71_RS20260at 4507.517 kb on - strand, within QEN71_RS20260at 4507.517 kb on - strand, within QEN71_RS20260at 4507.771 kb on + strand, within QEN71_RS20260at 4507.771 kb on + strand, within QEN71_RS20260at 4507.772 kb on - strand, within QEN71_RS20260at 4507.772 kb on - strand, within QEN71_RS20260at 4507.846 kb on + strand, within QEN71_RS20260at 4507.846 kb on + strand, within QEN71_RS20260at 4507.847 kb on - strand, within QEN71_RS20260at 4507.871 kb on - strand, within QEN71_RS20260at 4507.871 kb on - strand, within QEN71_RS20260at 4507.871 kb on - strand, within QEN71_RS20260at 4507.871 kb on - strand, within QEN71_RS20260at 4508.088 kb on - strandat 4508.112 kb on + strandat 4508.112 kb on + strandat 4508.113 kb on - strandat 4508.113 kb on - strandat 4508.113 kb on - strandat 4508.113 kb on - strandat 4508.154 kb on + strandat 4508.154 kb on + strandat 4508.155 kb on - strandat 4508.155 kb on - strandat 4508.168 kb on + strandat 4508.214 kb on + strandat 4508.214 kb on + strandat 4508.214 kb on + strandat 4508.215 kb on - strandat 4508.215 kb on - strandat 4508.215 kb on - strandat 4508.521 kb on + strandat 4508.579 kb on - strandat 4508.783 kb on + strand, within QEN71_RS20265at 4508.872 kb on + strand, within QEN71_RS20265at 4508.873 kb on - strand, within QEN71_RS20265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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4,506,353 + -0.4
4,506,353 + +0.8
4,506,353 + -0.0
4,506,354 - -0.5
4,506,400 + -1.1
4,506,401 - +1.3
4,506,401 - +0.0
4,506,408 + -0.1
4,506,408 + -1.0
4,506,409 - +0.2
4,506,414 + -0.3
4,506,471 - +1.2
4,506,471 - -0.4
4,506,550 + QEN71_RS20255 0.12 -0.1
4,506,551 - QEN71_RS20255 0.12 +0.4
4,506,551 - QEN71_RS20255 0.12 +1.6
4,506,552 + QEN71_RS20255 0.12 +0.9
4,506,552 + QEN71_RS20255 0.12 -0.3
4,506,552 + QEN71_RS20255 0.12 -1.9
4,506,553 - QEN71_RS20255 0.12 -0.8
4,506,694 + QEN71_RS20255 0.32 +0.2
4,506,694 + QEN71_RS20255 0.32 +0.1
4,506,743 - QEN71_RS20255 0.38 +0.1
4,506,759 + QEN71_RS20255 0.40 -1.0
4,506,760 - QEN71_RS20255 0.41 +0.5
4,506,760 - QEN71_RS20255 0.41 -1.3
4,506,760 - QEN71_RS20255 0.41 -0.7
4,506,760 - QEN71_RS20255 0.41 +0.2
4,506,867 + QEN71_RS20255 0.55 +0.1
4,507,116 + QEN71_RS20255 0.90 -1.1
4,507,117 - QEN71_RS20255 0.90 +1.5
4,507,117 - QEN71_RS20255 0.90 -0.2
4,507,118 + -1.6
4,507,118 + -0.5
4,507,118 + +0.2
4,507,119 - -0.4
4,507,119 - -0.7
4,507,119 - +1.0
4,507,119 - -1.0
4,507,119 - +0.6
4,507,119 - -0.6
4,507,119 - +2.2
4,507,471 + QEN71_RS20260 0.22 +0.2
4,507,472 - QEN71_RS20260 0.22 -0.5
4,507,516 + QEN71_RS20260 0.27 +0.2
4,507,516 + QEN71_RS20260 0.27 +0.6
4,507,517 - QEN71_RS20260 0.27 +0.2
4,507,517 - QEN71_RS20260 0.27 -1.0
4,507,517 - QEN71_RS20260 0.27 -0.2
4,507,517 - QEN71_RS20260 0.27 -0.4
4,507,771 + QEN71_RS20260 0.55 -1.3
4,507,771 + QEN71_RS20260 0.55 -0.1
4,507,772 - QEN71_RS20260 0.55 +2.8
4,507,772 - QEN71_RS20260 0.55 +0.3
4,507,846 + QEN71_RS20260 0.63 +0.3
4,507,846 + QEN71_RS20260 0.63 -1.9
4,507,847 - QEN71_RS20260 0.63 +0.7
4,507,871 - QEN71_RS20260 0.66 -0.9
4,507,871 - QEN71_RS20260 0.66 +0.2
4,507,871 - QEN71_RS20260 0.66 -0.4
4,507,871 - QEN71_RS20260 0.66 -0.5
4,508,088 - -0.0
4,508,112 + +1.2
4,508,112 + -1.2
4,508,113 - -0.2
4,508,113 - -0.3
4,508,113 - +0.3
4,508,113 - -1.8
4,508,154 + -0.3
4,508,154 + +0.3
4,508,155 - -1.4
4,508,155 - -0.0
4,508,168 + -0.3
4,508,214 + -1.5
4,508,214 + +0.6
4,508,214 + -0.4
4,508,215 - -0.5
4,508,215 - -0.1
4,508,215 - -0.4
4,508,521 + -0.7
4,508,579 - +1.8
4,508,783 + QEN71_RS20265 0.27 -0.1
4,508,872 + QEN71_RS20265 0.36 -1.0
4,508,873 - QEN71_RS20265 0.36 +0.1

Or see this region's nucleotide sequence