Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18635

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS18625 and QEN71_RS18630 are separated by 87 nucleotidesQEN71_RS18630 and QEN71_RS18635 are separated by 15 nucleotidesQEN71_RS18635 and QEN71_RS18640 are separated by 509 nucleotides QEN71_RS18625: QEN71_RS18625 - hypothetical protein, at 4,147,205 to 4,147,864 _RS18625 QEN71_RS18630: QEN71_RS18630 - hypothetical protein, at 4,147,952 to 4,148,419 _RS18630 QEN71_RS18635: QEN71_RS18635 - hypothetical protein, at 4,148,435 to 4,148,839 _RS18635 QEN71_RS18640: QEN71_RS18640 - DMT family transporter, at 4,149,349 to 4,150,293 _RS18640 Position (kb) 4148 4149Strain fitness (log2 ratio) -2 -1 0 1 2at 4147.489 kb on - strand, within QEN71_RS18625at 4147.517 kb on + strand, within QEN71_RS18625at 4147.517 kb on + strand, within QEN71_RS18625at 4147.517 kb on + strand, within QEN71_RS18625at 4147.517 kb on + strand, within QEN71_RS18625at 4147.517 kb on + strand, within QEN71_RS18625at 4147.517 kb on + strand, within QEN71_RS18625at 4147.518 kb on - strand, within QEN71_RS18625at 4147.518 kb on - strand, within QEN71_RS18625at 4147.518 kb on - strand, within QEN71_RS18625at 4147.518 kb on - strand, within QEN71_RS18625at 4147.518 kb on - strand, within QEN71_RS18625at 4147.582 kb on + strand, within QEN71_RS18625at 4147.584 kb on + strand, within QEN71_RS18625at 4147.584 kb on + strand, within QEN71_RS18625at 4147.584 kb on + strand, within QEN71_RS18625at 4147.584 kb on + strand, within QEN71_RS18625at 4147.585 kb on - strand, within QEN71_RS18625at 4147.585 kb on - strand, within QEN71_RS18625at 4147.700 kb on + strand, within QEN71_RS18625at 4147.730 kb on + strand, within QEN71_RS18625at 4147.730 kb on + strand, within QEN71_RS18625at 4147.731 kb on - strand, within QEN71_RS18625at 4147.756 kb on - strand, within QEN71_RS18625at 4147.825 kb on - strandat 4147.825 kb on - strandat 4147.825 kb on - strandat 4147.825 kb on - strandat 4147.825 kb on - strandat 4147.849 kb on + strandat 4147.849 kb on + strandat 4147.862 kb on + strandat 4147.926 kb on + strandat 4147.926 kb on + strandat 4147.927 kb on - strandat 4147.931 kb on - strandat 4147.940 kb on - strandat 4147.940 kb on - strandat 4147.940 kb on - strandat 4147.940 kb on - strandat 4147.940 kb on - strandat 4147.940 kb on - strandat 4147.953 kb on + strandat 4147.986 kb on + strandat 4147.986 kb on + strandat 4147.987 kb on - strandat 4148.003 kb on + strand, within QEN71_RS18630at 4148.043 kb on - strand, within QEN71_RS18630at 4148.159 kb on + strand, within QEN71_RS18630at 4148.160 kb on - strand, within QEN71_RS18630at 4148.237 kb on + strand, within QEN71_RS18630at 4148.238 kb on - strand, within QEN71_RS18630at 4148.238 kb on - strand, within QEN71_RS18630at 4148.278 kb on + strand, within QEN71_RS18630at 4148.278 kb on + strand, within QEN71_RS18630at 4148.279 kb on - strand, within QEN71_RS18630at 4148.316 kb on + strand, within QEN71_RS18630at 4148.316 kb on + strand, within QEN71_RS18630at 4148.316 kb on + strand, within QEN71_RS18630at 4148.316 kb on + strand, within QEN71_RS18630at 4148.316 kb on + strand, within QEN71_RS18630at 4148.317 kb on - strand, within QEN71_RS18630at 4148.317 kb on - strand, within QEN71_RS18630at 4148.317 kb on - strand, within QEN71_RS18630at 4148.322 kb on + strand, within QEN71_RS18630at 4148.322 kb on + strand, within QEN71_RS18630at 4148.322 kb on + strand, within QEN71_RS18630at 4148.322 kb on + strand, within QEN71_RS18630at 4148.322 kb on + strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.323 kb on - strand, within QEN71_RS18630at 4148.392 kb on + strandat 4148.392 kb on + strandat 4148.392 kb on + strandat 4148.393 kb on - strandat 4148.403 kb on + strandat 4148.420 kb on - strandat 4148.436 kb on + strandat 4148.436 kb on + strandat 4148.449 kb on + strandat 4148.598 kb on - strand, within QEN71_RS18635at 4148.669 kb on - strand, within QEN71_RS18635at 4148.811 kb on - strandat 4148.811 kb on - strandat 4148.854 kb on - strandat 4148.859 kb on - strandat 4148.901 kb on - strandat 4148.920 kb on + strandat 4148.921 kb on - strandat 4148.921 kb on - strandat 4148.940 kb on + strandat 4148.940 kb on + strandat 4148.941 kb on - strandat 4148.941 kb on - strandat 4148.941 kb on - strandat 4148.941 kb on - strandat 4148.950 kb on + strandat 4148.951 kb on - strandat 4148.951 kb on - strandat 4149.214 kb on + strandat 4149.215 kb on - strandat 4149.215 kb on - strandat 4149.215 kb on - strandat 4149.216 kb on + strandat 4149.216 kb on + strandat 4149.217 kb on - strandat 4149.217 kb on - strandat 4149.218 kb on + strandat 4149.218 kb on + strandat 4149.218 kb on + strandat 4149.218 kb on + strandat 4149.219 kb on - strandat 4149.219 kb on - strandat 4149.227 kb on - strandat 4149.227 kb on - strandat 4149.227 kb on - strandat 4149.313 kb on - strandat 4149.350 kb on + strandat 4149.351 kb on - strandat 4149.473 kb on - strand, within QEN71_RS18640at 4149.576 kb on - strand, within QEN71_RS18640at 4149.576 kb on - strand, within QEN71_RS18640at 4149.576 kb on - strand, within QEN71_RS18640at 4149.672 kb on + strand, within QEN71_RS18640at 4149.672 kb on + strand, within QEN71_RS18640at 4149.672 kb on + strand, within QEN71_RS18640at 4149.672 kb on + strand, within QEN71_RS18640at 4149.673 kb on - strand, within QEN71_RS18640at 4149.673 kb on - strand, within QEN71_RS18640at 4149.731 kb on + strand, within QEN71_RS18640at 4149.731 kb on + strand, within QEN71_RS18640at 4149.732 kb on - strand, within QEN71_RS18640at 4149.732 kb on - strand, within QEN71_RS18640at 4149.732 kb on - strand, within QEN71_RS18640at 4149.734 kb on + strand, within QEN71_RS18640at 4149.734 kb on + strand, within QEN71_RS18640at 4149.734 kb on + strand, within QEN71_RS18640at 4149.735 kb on - strand, within QEN71_RS18640at 4149.735 kb on - strand, within QEN71_RS18640

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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4,147,489 - QEN71_RS18625 0.43 -0.2
4,147,517 + QEN71_RS18625 0.47 -0.2
4,147,517 + QEN71_RS18625 0.47 -0.2
4,147,517 + QEN71_RS18625 0.47 +0.3
4,147,517 + QEN71_RS18625 0.47 +1.2
4,147,517 + QEN71_RS18625 0.47 -0.3
4,147,517 + QEN71_RS18625 0.47 +0.4
4,147,518 - QEN71_RS18625 0.47 -0.4
4,147,518 - QEN71_RS18625 0.47 -1.2
4,147,518 - QEN71_RS18625 0.47 +0.6
4,147,518 - QEN71_RS18625 0.47 +0.8
4,147,518 - QEN71_RS18625 0.47 -0.7
4,147,582 + QEN71_RS18625 0.57 +0.6
4,147,584 + QEN71_RS18625 0.57 +0.1
4,147,584 + QEN71_RS18625 0.57 -1.4
4,147,584 + QEN71_RS18625 0.57 +1.4
4,147,584 + QEN71_RS18625 0.57 +0.9
4,147,585 - QEN71_RS18625 0.58 +0.4
4,147,585 - QEN71_RS18625 0.58 -0.2
4,147,700 + QEN71_RS18625 0.75 -0.7
4,147,730 + QEN71_RS18625 0.80 -0.8
4,147,730 + QEN71_RS18625 0.80 +0.6
4,147,731 - QEN71_RS18625 0.80 -0.2
4,147,756 - QEN71_RS18625 0.83 -1.1
4,147,825 - +0.1
4,147,825 - +0.3
4,147,825 - -0.2
4,147,825 - -1.1
4,147,825 - +0.2
4,147,849 + -0.7
4,147,849 + -0.6
4,147,862 + -2.4
4,147,926 + -0.7
4,147,926 + -0.6
4,147,927 - +0.3
4,147,931 - +0.9
4,147,940 - -0.5
4,147,940 - +0.2
4,147,940 - +0.5
4,147,940 - +0.3
4,147,940 - +0.0
4,147,940 - -2.4
4,147,953 + +0.4
4,147,986 + -0.7
4,147,986 + +0.7
4,147,987 - +2.2
4,148,003 + QEN71_RS18630 0.11 -1.2
4,148,043 - QEN71_RS18630 0.19 +0.8
4,148,159 + QEN71_RS18630 0.44 -0.4
4,148,160 - QEN71_RS18630 0.44 -0.3
4,148,237 + QEN71_RS18630 0.61 +0.2
4,148,238 - QEN71_RS18630 0.61 -1.0
4,148,238 - QEN71_RS18630 0.61 -0.4
4,148,278 + QEN71_RS18630 0.70 -0.8
4,148,278 + QEN71_RS18630 0.70 +0.2
4,148,279 - QEN71_RS18630 0.70 -0.4
4,148,316 + QEN71_RS18630 0.78 -0.9
4,148,316 + QEN71_RS18630 0.78 +1.2
4,148,316 + QEN71_RS18630 0.78 -1.8
4,148,316 + QEN71_RS18630 0.78 +0.3
4,148,316 + QEN71_RS18630 0.78 -1.9
4,148,317 - QEN71_RS18630 0.78 -1.9
4,148,317 - QEN71_RS18630 0.78 +0.3
4,148,317 - QEN71_RS18630 0.78 +0.3
4,148,322 + QEN71_RS18630 0.79 +0.4
4,148,322 + QEN71_RS18630 0.79 -0.1
4,148,322 + QEN71_RS18630 0.79 +0.6
4,148,322 + QEN71_RS18630 0.79 -1.4
4,148,322 + QEN71_RS18630 0.79 +0.0
4,148,323 - QEN71_RS18630 0.79 -0.6
4,148,323 - QEN71_RS18630 0.79 -1.1
4,148,323 - QEN71_RS18630 0.79 -1.0
4,148,323 - QEN71_RS18630 0.79 -0.4
4,148,323 - QEN71_RS18630 0.79 -0.8
4,148,323 - QEN71_RS18630 0.79 -0.9
4,148,323 - QEN71_RS18630 0.79 -0.9
4,148,323 - QEN71_RS18630 0.79 -0.2
4,148,392 + -2.4
4,148,392 + +0.8
4,148,392 + -1.5
4,148,393 - -0.1
4,148,403 + -1.5
4,148,420 - -0.7
4,148,436 + +0.6
4,148,436 + +0.4
4,148,449 + -0.8
4,148,598 - QEN71_RS18635 0.40 -1.5
4,148,669 - QEN71_RS18635 0.58 -2.4
4,148,811 - -0.2
4,148,811 - -1.2
4,148,854 - -0.6
4,148,859 - -2.0
4,148,901 - +0.2
4,148,920 + -0.9
4,148,921 - -0.0
4,148,921 - +0.5
4,148,940 + +0.4
4,148,940 + -1.4
4,148,941 - -0.1
4,148,941 - -0.2
4,148,941 - -0.1
4,148,941 - -0.6
4,148,950 + -0.1
4,148,951 - +0.5
4,148,951 - +0.2
4,149,214 + -0.5
4,149,215 - -0.5
4,149,215 - -1.3
4,149,215 - +0.4
4,149,216 + -0.6
4,149,216 + -0.6
4,149,217 - -0.4
4,149,217 - +0.6
4,149,218 + -2.4
4,149,218 + -0.8
4,149,218 + +0.2
4,149,218 + +1.2
4,149,219 - -0.8
4,149,219 - +0.2
4,149,227 - +0.5
4,149,227 - -0.9
4,149,227 - +0.8
4,149,313 - -0.0
4,149,350 + -0.8
4,149,351 - +1.4
4,149,473 - QEN71_RS18640 0.13 -0.2
4,149,576 - QEN71_RS18640 0.24 -0.2
4,149,576 - QEN71_RS18640 0.24 -0.2
4,149,576 - QEN71_RS18640 0.24 -0.6
4,149,672 + QEN71_RS18640 0.34 -0.5
4,149,672 + QEN71_RS18640 0.34 -1.3
4,149,672 + QEN71_RS18640 0.34 -0.4
4,149,672 + QEN71_RS18640 0.34 +0.1
4,149,673 - QEN71_RS18640 0.34 +0.4
4,149,673 - QEN71_RS18640 0.34 +0.6
4,149,731 + QEN71_RS18640 0.40 -1.2
4,149,731 + QEN71_RS18640 0.40 -1.3
4,149,732 - QEN71_RS18640 0.41 -0.4
4,149,732 - QEN71_RS18640 0.41 -0.2
4,149,732 - QEN71_RS18640 0.41 -0.3
4,149,734 + QEN71_RS18640 0.41 -0.6
4,149,734 + QEN71_RS18640 0.41 -0.1
4,149,734 + QEN71_RS18640 0.41 -0.8
4,149,735 - QEN71_RS18640 0.41 +0.2
4,149,735 - QEN71_RS18640 0.41 +0.8

Or see this region's nucleotide sequence