Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17575

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17570 and QEN71_RS17575 are separated by 152 nucleotidesQEN71_RS17575 and QEN71_RS17580 are separated by 3 nucleotidesQEN71_RS17580 and QEN71_RS17585 are separated by 4 nucleotides QEN71_RS17570: QEN71_RS17570 - GntR family transcriptional regulator, at 3,907,908 to 3,908,708 _RS17570 QEN71_RS17575: QEN71_RS17575 - succinate dehydrogenase, cytochrome b556 subunit, at 3,908,861 to 3,909,277 _RS17575 QEN71_RS17580: QEN71_RS17580 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 3,909,281 to 3,909,649 _RS17580 QEN71_RS17585: QEN71_RS17585 - succinate dehydrogenase flavoprotein subunit, at 3,909,654 to 3,911,429 _RS17585 Position (kb) 3908 3909 3910Strain fitness (log2 ratio) -2 -1 0 1at 3908.013 kb on + strand, within QEN71_RS17570at 3908.013 kb on + strand, within QEN71_RS17570at 3908.013 kb on + strand, within QEN71_RS17570at 3908.013 kb on + strand, within QEN71_RS17570at 3908.013 kb on + strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.014 kb on - strand, within QEN71_RS17570at 3908.084 kb on + strand, within QEN71_RS17570at 3908.085 kb on - strand, within QEN71_RS17570at 3908.085 kb on - strand, within QEN71_RS17570at 3908.085 kb on - strand, within QEN71_RS17570at 3908.110 kb on - strand, within QEN71_RS17570at 3908.110 kb on - strand, within QEN71_RS17570at 3908.174 kb on - strand, within QEN71_RS17570at 3908.204 kb on + strand, within QEN71_RS17570at 3908.205 kb on - strand, within QEN71_RS17570at 3908.288 kb on - strand, within QEN71_RS17570at 3908.470 kb on - strand, within QEN71_RS17570at 3908.470 kb on - strand, within QEN71_RS17570at 3908.484 kb on + strand, within QEN71_RS17570at 3908.485 kb on - strand, within QEN71_RS17570at 3908.625 kb on + strand, within QEN71_RS17570at 3908.625 kb on + strand, within QEN71_RS17570at 3908.626 kb on - strand, within QEN71_RS17570at 3908.626 kb on - strand, within QEN71_RS17570at 3908.627 kb on + strand, within QEN71_RS17570at 3908.627 kb on + strand, within QEN71_RS17570at 3908.627 kb on + strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.628 kb on - strand, within QEN71_RS17570at 3908.631 kb on + strandat 3908.631 kb on + strandat 3908.631 kb on + strandat 3908.631 kb on + strandat 3908.631 kb on + strandat 3908.632 kb on - strandat 3908.632 kb on - strandat 3908.632 kb on - strandat 3908.632 kb on - strandat 3908.632 kb on - strandat 3908.632 kb on - strandat 3908.632 kb on - strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.667 kb on + strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.668 kb on - strandat 3908.685 kb on + strandat 3908.686 kb on - strandat 3908.686 kb on - strandat 3908.689 kb on - strandat 3908.689 kb on - strandat 3908.792 kb on + strandat 3908.792 kb on + strandat 3908.793 kb on - strandat 3908.793 kb on - strandat 3908.793 kb on - strandat 3908.833 kb on + strandat 3908.833 kb on + strandat 3908.834 kb on - strandat 3908.842 kb on + strandat 3908.842 kb on + strandat 3908.843 kb on - strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.846 kb on + strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.847 kb on - strandat 3908.849 kb on + strandat 3908.850 kb on - strandat 3908.857 kb on + strandat 3908.857 kb on + strandat 3908.857 kb on + strandat 3908.857 kb on + strandat 3908.857 kb on + strandat 3908.858 kb on - strandat 3908.858 kb on - strandat 3908.858 kb on - strandat 3908.858 kb on - strandat 3908.858 kb on - strandat 3908.858 kb on - strandat 3908.858 kb on - strandat 3908.919 kb on + strand, within QEN71_RS17575at 3908.919 kb on + strand, within QEN71_RS17575

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,908,013 + QEN71_RS17570 0.13 -1.2
3,908,013 + QEN71_RS17570 0.13 -1.0
3,908,013 + QEN71_RS17570 0.13 +0.2
3,908,013 + QEN71_RS17570 0.13 -1.0
3,908,013 + QEN71_RS17570 0.13 -2.1
3,908,014 - QEN71_RS17570 0.13 -1.4
3,908,014 - QEN71_RS17570 0.13 -0.2
3,908,014 - QEN71_RS17570 0.13 -0.4
3,908,014 - QEN71_RS17570 0.13 -1.3
3,908,014 - QEN71_RS17570 0.13 -0.6
3,908,014 - QEN71_RS17570 0.13 -0.8
3,908,014 - QEN71_RS17570 0.13 -0.6
3,908,084 + QEN71_RS17570 0.22 -1.2
3,908,085 - QEN71_RS17570 0.22 +0.4
3,908,085 - QEN71_RS17570 0.22 -2.0
3,908,085 - QEN71_RS17570 0.22 -0.4
3,908,110 - QEN71_RS17570 0.25 -2.1
3,908,110 - QEN71_RS17570 0.25 -2.7
3,908,174 - QEN71_RS17570 0.33 +1.2
3,908,204 + QEN71_RS17570 0.37 -1.8
3,908,205 - QEN71_RS17570 0.37 +0.2
3,908,288 - QEN71_RS17570 0.47 -0.4
3,908,470 - QEN71_RS17570 0.70 -1.6
3,908,470 - QEN71_RS17570 0.70 +0.8
3,908,484 + QEN71_RS17570 0.72 -1.2
3,908,485 - QEN71_RS17570 0.72 -1.6
3,908,625 + QEN71_RS17570 0.90 -1.0
3,908,625 + QEN71_RS17570 0.90 -1.0
3,908,626 - QEN71_RS17570 0.90 +0.7
3,908,626 - QEN71_RS17570 0.90 -0.8
3,908,627 + QEN71_RS17570 0.90 -0.4
3,908,627 + QEN71_RS17570 0.90 -0.4
3,908,627 + QEN71_RS17570 0.90 +0.2
3,908,628 - QEN71_RS17570 0.90 +0.8
3,908,628 - QEN71_RS17570 0.90 -1.4
3,908,628 - QEN71_RS17570 0.90 -0.8
3,908,628 - QEN71_RS17570 0.90 -2.0
3,908,628 - QEN71_RS17570 0.90 +0.2
3,908,628 - QEN71_RS17570 0.90 -1.2
3,908,628 - QEN71_RS17570 0.90 -0.9
3,908,628 - QEN71_RS17570 0.90 -0.8
3,908,628 - QEN71_RS17570 0.90 -1.0
3,908,628 - QEN71_RS17570 0.90 -0.2
3,908,628 - QEN71_RS17570 0.90 -0.6
3,908,631 + -0.6
3,908,631 + -2.2
3,908,631 + -0.2
3,908,631 + -0.8
3,908,631 + +0.2
3,908,632 - +0.2
3,908,632 - -0.2
3,908,632 - -0.8
3,908,632 - -1.5
3,908,632 - -0.2
3,908,632 - -1.3
3,908,632 - -0.4
3,908,667 + -1.0
3,908,667 + +0.2
3,908,667 + +0.2
3,908,667 + -0.6
3,908,667 + -1.6
3,908,667 + +0.2
3,908,667 + -0.6
3,908,667 + +0.8
3,908,667 + +0.8
3,908,668 - -0.6
3,908,668 - -2.0
3,908,668 - -1.2
3,908,668 - +0.2
3,908,668 - +0.2
3,908,668 - -0.8
3,908,668 - -0.6
3,908,668 - -0.2
3,908,685 + +0.2
3,908,686 - +0.2
3,908,686 - +0.2
3,908,689 - -2.1
3,908,689 - +0.6
3,908,792 + -0.8
3,908,792 + +0.2
3,908,793 - +0.4
3,908,793 - -1.9
3,908,793 - -0.8
3,908,833 + +0.8
3,908,833 + -0.0
3,908,834 - -1.2
3,908,842 + +0.6
3,908,842 + +0.7
3,908,843 - -1.1
3,908,846 + -0.9
3,908,846 + +0.8
3,908,846 + -1.1
3,908,846 + -0.9
3,908,846 + +0.9
3,908,846 + +0.6
3,908,846 + -0.5
3,908,846 + +0.6
3,908,846 + -0.4
3,908,846 + -0.1
3,908,846 + -0.3
3,908,846 + +1.1
3,908,846 + -2.2
3,908,847 - -0.4
3,908,847 - -0.9
3,908,847 - +0.3
3,908,847 - -1.3
3,908,847 - -1.2
3,908,847 - -0.7
3,908,847 - +0.0
3,908,847 - -0.6
3,908,847 - -1.6
3,908,847 - -1.3
3,908,847 - -1.6
3,908,849 + -0.2
3,908,850 - -1.9
3,908,857 + -1.4
3,908,857 + -0.4
3,908,857 + +0.3
3,908,857 + -0.6
3,908,857 + +0.1
3,908,858 - -0.2
3,908,858 - -1.3
3,908,858 - -2.1
3,908,858 - -1.1
3,908,858 - -0.5
3,908,858 - +0.6
3,908,858 - -1.0
3,908,919 + QEN71_RS17575 0.14 -1.3
3,908,919 + QEN71_RS17575 0.14 -1.3

Or see this region's nucleotide sequence