Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17135

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17125 and QEN71_RS17130 are separated by 81 nucleotidesQEN71_RS17130 and QEN71_RS17135 are separated by 106 nucleotidesQEN71_RS17135 and QEN71_RS17140 are separated by 461 nucleotidesQEN71_RS17140 and QEN71_RS17145 are separated by 41 nucleotides QEN71_RS17125: QEN71_RS17125 - sigma 54-interacting transcriptional regulator, at 3,799,342 to 3,800,802 _RS17125 QEN71_RS17130: QEN71_RS17130 - BON domain-containing protein, at 3,800,884 to 3,801,420 _RS17130 QEN71_RS17135: QEN71_RS17135 - hypothetical protein, at 3,801,527 to 3,801,805 _RS17135 QEN71_RS17140: QEN71_RS17140 - hypothetical protein, at 3,802,267 to 3,802,470 _RS17140 QEN71_RS17145: QEN71_RS17145 - serine hydrolase domain-containing protein, at 3,802,512 to 3,803,711 _RS17145 Position (kb) 3801 3802Strain fitness (log2 ratio) -2 -1 0 1 2at 3800.767 kb on + strandat 3800.768 kb on - strandat 3800.768 kb on - strandat 3800.768 kb on - strandat 3800.785 kb on + strandat 3800.797 kb on - strandat 3800.850 kb on - strandat 3800.850 kb on - strandat 3800.995 kb on + strand, within QEN71_RS17130at 3800.996 kb on - strand, within QEN71_RS17130at 3801.094 kb on + strand, within QEN71_RS17130at 3801.154 kb on + strand, within QEN71_RS17130at 3801.154 kb on + strand, within QEN71_RS17130at 3801.154 kb on + strand, within QEN71_RS17130at 3801.154 kb on + strand, within QEN71_RS17130at 3801.154 kb on + strand, within QEN71_RS17130at 3801.155 kb on - strand, within QEN71_RS17130at 3801.155 kb on - strand, within QEN71_RS17130at 3801.155 kb on - strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.156 kb on + strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.157 kb on - strand, within QEN71_RS17130at 3801.160 kb on + strand, within QEN71_RS17130at 3801.160 kb on + strand, within QEN71_RS17130at 3801.161 kb on - strand, within QEN71_RS17130at 3801.161 kb on - strand, within QEN71_RS17130at 3801.259 kb on + strand, within QEN71_RS17130at 3801.382 kb on + strandat 3801.383 kb on - strandat 3801.383 kb on - strandat 3801.383 kb on - strandat 3801.418 kb on + strandat 3801.426 kb on + strandat 3801.451 kb on + strandat 3801.451 kb on + strandat 3801.451 kb on + strandat 3801.452 kb on - strandat 3801.459 kb on - strandat 3801.459 kb on - strandat 3801.697 kb on + strand, within QEN71_RS17135at 3801.785 kb on + strandat 3801.785 kb on + strandat 3801.786 kb on - strandat 3801.786 kb on - strandat 3801.803 kb on + strandat 3801.803 kb on + strandat 3801.804 kb on - strandat 3801.887 kb on + strandat 3801.887 kb on + strandat 3801.887 kb on + strandat 3801.888 kb on - strandat 3801.888 kb on - strandat 3801.898 kb on + strandat 3801.898 kb on + strandat 3801.898 kb on + strandat 3801.898 kb on + strandat 3801.898 kb on + strandat 3801.899 kb on - strandat 3801.899 kb on - strandat 3801.899 kb on - strandat 3801.899 kb on - strandat 3801.899 kb on - strandat 3801.899 kb on - strandat 3801.900 kb on + strandat 3801.900 kb on + strandat 3801.901 kb on - strandat 3801.901 kb on - strandat 3802.119 kb on + strandat 3802.121 kb on + strandat 3802.121 kb on + strandat 3802.121 kb on + strandat 3802.122 kb on - strandat 3802.122 kb on - strandat 3802.122 kb on - strandat 3802.122 kb on - strandat 3802.355 kb on - strand, within QEN71_RS17140at 3802.459 kb on + strandat 3802.511 kb on + strandat 3802.511 kb on + strandat 3802.511 kb on + strandat 3802.511 kb on + strandat 3802.512 kb on - strandat 3802.512 kb on - strandat 3802.517 kb on + strandat 3802.517 kb on + strandat 3802.518 kb on - strandat 3802.518 kb on - strandat 3802.518 kb on - strandat 3802.572 kb on + strandat 3802.572 kb on + strandat 3802.573 kb on - strandat 3802.573 kb on - strandat 3802.573 kb on - strandat 3802.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,800,767 + +0.8
3,800,768 - -0.0
3,800,768 - -0.5
3,800,768 - -0.7
3,800,785 + -0.2
3,800,797 - +1.8
3,800,850 - +0.9
3,800,850 - -0.5
3,800,995 + QEN71_RS17130 0.21 -0.8
3,800,996 - QEN71_RS17130 0.21 +0.7
3,801,094 + QEN71_RS17130 0.39 -0.7
3,801,154 + QEN71_RS17130 0.50 -1.7
3,801,154 + QEN71_RS17130 0.50 -1.2
3,801,154 + QEN71_RS17130 0.50 +0.1
3,801,154 + QEN71_RS17130 0.50 -1.2
3,801,154 + QEN71_RS17130 0.50 -0.8
3,801,155 - QEN71_RS17130 0.50 -1.0
3,801,155 - QEN71_RS17130 0.50 +0.4
3,801,155 - QEN71_RS17130 0.50 -0.3
3,801,156 + QEN71_RS17130 0.51 -0.7
3,801,156 + QEN71_RS17130 0.51 -0.0
3,801,156 + QEN71_RS17130 0.51 -0.3
3,801,156 + QEN71_RS17130 0.51 -0.9
3,801,156 + QEN71_RS17130 0.51 -0.1
3,801,156 + QEN71_RS17130 0.51 -0.0
3,801,156 + QEN71_RS17130 0.51 -0.5
3,801,156 + QEN71_RS17130 0.51 -0.2
3,801,156 + QEN71_RS17130 0.51 +0.6
3,801,156 + QEN71_RS17130 0.51 -2.1
3,801,156 + QEN71_RS17130 0.51 +0.6
3,801,157 - QEN71_RS17130 0.51 +0.1
3,801,157 - QEN71_RS17130 0.51 -0.0
3,801,157 - QEN71_RS17130 0.51 -1.0
3,801,157 - QEN71_RS17130 0.51 +0.8
3,801,157 - QEN71_RS17130 0.51 -0.4
3,801,157 - QEN71_RS17130 0.51 -0.5
3,801,157 - QEN71_RS17130 0.51 +0.2
3,801,157 - QEN71_RS17130 0.51 -0.9
3,801,157 - QEN71_RS17130 0.51 +0.2
3,801,160 + QEN71_RS17130 0.51 +0.1
3,801,160 + QEN71_RS17130 0.51 -0.2
3,801,161 - QEN71_RS17130 0.52 -2.4
3,801,161 - QEN71_RS17130 0.52 -0.8
3,801,259 + QEN71_RS17130 0.70 -1.2
3,801,382 + -1.2
3,801,383 - +0.2
3,801,383 - -0.9
3,801,383 - -0.9
3,801,418 + +1.2
3,801,426 + +0.9
3,801,451 + -1.3
3,801,451 + -0.8
3,801,451 + -0.3
3,801,452 - +0.3
3,801,459 - -1.0
3,801,459 - -0.2
3,801,697 + QEN71_RS17135 0.61 -1.1
3,801,785 + +0.1
3,801,785 + -0.6
3,801,786 - -1.7
3,801,786 - -0.8
3,801,803 + +0.2
3,801,803 + -0.5
3,801,804 - -0.0
3,801,887 + -1.0
3,801,887 + -0.1
3,801,887 + +0.0
3,801,888 - +0.9
3,801,888 - -0.1
3,801,898 + -0.4
3,801,898 + -1.7
3,801,898 + +0.4
3,801,898 + -0.8
3,801,898 + +0.7
3,801,899 - +0.2
3,801,899 - -2.0
3,801,899 - -0.8
3,801,899 - -0.5
3,801,899 - +0.2
3,801,899 - -1.1
3,801,900 + -1.0
3,801,900 + +0.5
3,801,901 - +1.0
3,801,901 - -0.6
3,802,119 + +0.1
3,802,121 + +0.8
3,802,121 + -0.2
3,802,121 + +2.7
3,802,122 - +1.2
3,802,122 - -0.8
3,802,122 - -0.6
3,802,122 - -0.6
3,802,355 - QEN71_RS17140 0.43 -0.7
3,802,459 + -0.6
3,802,511 + -0.1
3,802,511 + -1.3
3,802,511 + +0.4
3,802,511 + -1.4
3,802,512 - -0.0
3,802,512 - -1.0
3,802,517 + +0.2
3,802,517 + -0.8
3,802,518 - -0.1
3,802,518 - -1.0
3,802,518 - -1.0
3,802,572 + +0.4
3,802,572 + -0.3
3,802,573 - +0.1
3,802,573 - -1.2
3,802,573 - +1.4
3,802,573 - +0.3

Or see this region's nucleotide sequence