Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15840

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15830 and QEN71_RS15835 are separated by 29 nucleotidesQEN71_RS15835 and QEN71_RS15840 are separated by 77 nucleotidesQEN71_RS15840 and QEN71_RS15845 are separated by 223 nucleotidesQEN71_RS15845 and QEN71_RS15850 are separated by 65 nucleotides QEN71_RS15830: QEN71_RS15830 - TauD/TfdA family dioxygenase, at 3,532,715 to 3,533,740 _RS15830 QEN71_RS15835: QEN71_RS15835 - MbtH family NRPS accessory protein, at 3,533,770 to 3,534,003 _RS15835 QEN71_RS15840: QEN71_RS15840 - RNA polymerase factor sigma-70, at 3,534,081 to 3,534,704 _RS15840 QEN71_RS15845: QEN71_RS15845 - 4'-phosphopantetheinyl transferase superfamily protein, at 3,534,928 to 3,535,623 _RS15845 QEN71_RS15850: QEN71_RS15850 - MFS transporter, at 3,535,689 to 3,537,020 _RS15850 Position (kb) 3534 3535Strain fitness (log2 ratio) -2 -1 0 1 2at 3533.256 kb on + strand, within QEN71_RS15830at 3533.256 kb on + strand, within QEN71_RS15830at 3533.256 kb on + strand, within QEN71_RS15830at 3533.256 kb on + strand, within QEN71_RS15830at 3533.256 kb on + strand, within QEN71_RS15830at 3533.256 kb on + strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.257 kb on - strand, within QEN71_RS15830at 3533.258 kb on + strand, within QEN71_RS15830at 3533.258 kb on + strand, within QEN71_RS15830at 3533.258 kb on + strand, within QEN71_RS15830at 3533.258 kb on + strand, within QEN71_RS15830at 3533.259 kb on - strand, within QEN71_RS15830at 3533.259 kb on - strand, within QEN71_RS15830at 3533.310 kb on + strand, within QEN71_RS15830at 3533.310 kb on + strand, within QEN71_RS15830at 3533.404 kb on - strand, within QEN71_RS15830at 3533.458 kb on + strand, within QEN71_RS15830at 3533.458 kb on + strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.459 kb on - strand, within QEN71_RS15830at 3533.460 kb on + strand, within QEN71_RS15830at 3533.461 kb on - strand, within QEN71_RS15830at 3533.461 kb on - strand, within QEN71_RS15830at 3533.552 kb on - strand, within QEN71_RS15830at 3533.552 kb on - strand, within QEN71_RS15830at 3533.844 kb on + strand, within QEN71_RS15835at 3533.845 kb on - strand, within QEN71_RS15835at 3533.845 kb on - strand, within QEN71_RS15835at 3533.931 kb on - strand, within QEN71_RS15835at 3534.004 kb on - strandat 3534.004 kb on - strandat 3534.004 kb on - strandat 3534.004 kb on - strandat 3534.126 kb on - strandat 3534.149 kb on - strand, within QEN71_RS15840at 3534.283 kb on - strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.493 kb on + strand, within QEN71_RS15840at 3534.494 kb on - strand, within QEN71_RS15840at 3534.494 kb on - strand, within QEN71_RS15840at 3534.494 kb on - strand, within QEN71_RS15840at 3534.494 kb on - strand, within QEN71_RS15840at 3534.858 kb on + strandat 3534.859 kb on - strandat 3534.863 kb on + strandat 3534.863 kb on + strandat 3534.864 kb on - strandat 3534.902 kb on + strandat 3534.902 kb on + strandat 3534.903 kb on - strandat 3534.905 kb on + strandat 3534.906 kb on - strandat 3534.922 kb on + strandat 3534.929 kb on + strandat 3534.966 kb on - strandat 3534.997 kb on + strandat 3534.997 kb on + strandat 3534.997 kb on + strandat 3534.997 kb on + strandat 3534.997 kb on + strandat 3534.998 kb on - strand, within QEN71_RS15845at 3535.067 kb on - strand, within QEN71_RS15845at 3535.067 kb on - strand, within QEN71_RS15845at 3535.077 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.384 kb on + strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.385 kb on - strand, within QEN71_RS15845at 3535.510 kb on + strand, within QEN71_RS15845at 3535.510 kb on + strand, within QEN71_RS15845at 3535.511 kb on - strand, within QEN71_RS15845at 3535.511 kb on - strand, within QEN71_RS15845at 3535.511 kb on - strand, within QEN71_RS15845at 3535.511 kb on - strand, within QEN71_RS15845at 3535.511 kb on - strand, within QEN71_RS15845at 3535.660 kb on - strandat 3535.690 kb on + strandat 3535.690 kb on + strandat 3535.691 kb on - strandat 3535.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,533,256 + QEN71_RS15830 0.53 -1.7
3,533,256 + QEN71_RS15830 0.53 -1.2
3,533,256 + QEN71_RS15830 0.53 -1.6
3,533,256 + QEN71_RS15830 0.53 -2.2
3,533,256 + QEN71_RS15830 0.53 -1.5
3,533,256 + QEN71_RS15830 0.53 -0.6
3,533,257 - QEN71_RS15830 0.53 -0.2
3,533,257 - QEN71_RS15830 0.53 -0.5
3,533,257 - QEN71_RS15830 0.53 -0.5
3,533,257 - QEN71_RS15830 0.53 -1.3
3,533,257 - QEN71_RS15830 0.53 -0.3
3,533,257 - QEN71_RS15830 0.53 +0.6
3,533,257 - QEN71_RS15830 0.53 -0.3
3,533,257 - QEN71_RS15830 0.53 +2.1
3,533,258 + QEN71_RS15830 0.53 +0.5
3,533,258 + QEN71_RS15830 0.53 -2.0
3,533,258 + QEN71_RS15830 0.53 -1.6
3,533,258 + QEN71_RS15830 0.53 -0.9
3,533,259 - QEN71_RS15830 0.53 +0.8
3,533,259 - QEN71_RS15830 0.53 +0.7
3,533,310 + QEN71_RS15830 0.58 -0.7
3,533,310 + QEN71_RS15830 0.58 -0.2
3,533,404 - QEN71_RS15830 0.67 +1.0
3,533,458 + QEN71_RS15830 0.72 -0.1
3,533,458 + QEN71_RS15830 0.72 -1.0
3,533,459 - QEN71_RS15830 0.73 -0.7
3,533,459 - QEN71_RS15830 0.73 +0.1
3,533,459 - QEN71_RS15830 0.73 -0.6
3,533,459 - QEN71_RS15830 0.73 -0.9
3,533,459 - QEN71_RS15830 0.73 -1.3
3,533,459 - QEN71_RS15830 0.73 +0.7
3,533,459 - QEN71_RS15830 0.73 +0.0
3,533,459 - QEN71_RS15830 0.73 -1.0
3,533,460 + QEN71_RS15830 0.73 -1.6
3,533,461 - QEN71_RS15830 0.73 -1.6
3,533,461 - QEN71_RS15830 0.73 +0.3
3,533,552 - QEN71_RS15830 0.82 -1.8
3,533,552 - QEN71_RS15830 0.82 -0.5
3,533,844 + QEN71_RS15835 0.32 -0.6
3,533,845 - QEN71_RS15835 0.32 -1.6
3,533,845 - QEN71_RS15835 0.32 +0.1
3,533,931 - QEN71_RS15835 0.69 -1.6
3,534,004 - -0.5
3,534,004 - -0.4
3,534,004 - -1.0
3,534,004 - -0.5
3,534,126 - +0.0
3,534,149 - QEN71_RS15840 0.11 -2.4
3,534,283 - QEN71_RS15840 0.32 -0.3
3,534,493 + QEN71_RS15840 0.66 -1.8
3,534,493 + QEN71_RS15840 0.66 -1.3
3,534,493 + QEN71_RS15840 0.66 -2.2
3,534,493 + QEN71_RS15840 0.66 +0.1
3,534,493 + QEN71_RS15840 0.66 -2.1
3,534,493 + QEN71_RS15840 0.66 -1.9
3,534,493 + QEN71_RS15840 0.66 -1.0
3,534,494 - QEN71_RS15840 0.66 +0.0
3,534,494 - QEN71_RS15840 0.66 -0.9
3,534,494 - QEN71_RS15840 0.66 +0.1
3,534,494 - QEN71_RS15840 0.66 -1.9
3,534,858 + -0.5
3,534,859 - -0.7
3,534,863 + -1.8
3,534,863 + -0.9
3,534,864 - -1.1
3,534,902 + -0.8
3,534,902 + -0.0
3,534,903 - -1.0
3,534,905 + -1.0
3,534,906 - +0.1
3,534,922 + -0.7
3,534,929 + +1.7
3,534,966 - +0.2
3,534,997 + -0.6
3,534,997 + +0.7
3,534,997 + -0.7
3,534,997 + +0.9
3,534,997 + -1.0
3,534,998 - QEN71_RS15845 0.10 -0.4
3,535,067 - QEN71_RS15845 0.20 +0.3
3,535,067 - QEN71_RS15845 0.20 +0.1
3,535,077 + QEN71_RS15845 0.21 -0.7
3,535,384 + QEN71_RS15845 0.66 -1.2
3,535,384 + QEN71_RS15845 0.66 +0.9
3,535,384 + QEN71_RS15845 0.66 -0.4
3,535,384 + QEN71_RS15845 0.66 -0.5
3,535,384 + QEN71_RS15845 0.66 +0.5
3,535,384 + QEN71_RS15845 0.66 -0.6
3,535,384 + QEN71_RS15845 0.66 +0.5
3,535,385 - QEN71_RS15845 0.66 -2.0
3,535,385 - QEN71_RS15845 0.66 -1.2
3,535,385 - QEN71_RS15845 0.66 -0.2
3,535,385 - QEN71_RS15845 0.66 +0.5
3,535,385 - QEN71_RS15845 0.66 -1.5
3,535,385 - QEN71_RS15845 0.66 -0.4
3,535,385 - QEN71_RS15845 0.66 -0.0
3,535,510 + QEN71_RS15845 0.84 +0.7
3,535,510 + QEN71_RS15845 0.84 -0.5
3,535,511 - QEN71_RS15845 0.84 +0.2
3,535,511 - QEN71_RS15845 0.84 -0.0
3,535,511 - QEN71_RS15845 0.84 -0.0
3,535,511 - QEN71_RS15845 0.84 -0.0
3,535,511 - QEN71_RS15845 0.84 -0.2
3,535,660 - +0.8
3,535,690 + -1.3
3,535,690 + -2.1
3,535,691 - +0.1
3,535,691 - -0.6

Or see this region's nucleotide sequence