Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15810

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15805 and QEN71_RS15810 are separated by 87 nucleotidesQEN71_RS15810 and QEN71_RS15815 overlap by 4 nucleotidesQEN71_RS15815 and QEN71_RS15820 are separated by 2 nucleotides QEN71_RS15805: QEN71_RS15805 - cyclic peptide export ABC transporter, at 3,526,074 to 3,527,867 _RS15805 QEN71_RS15810: QEN71_RS15810 - iron-siderophore ABC transporter substrate-binding protein, at 3,527,955 to 3,528,956 _RS15810 QEN71_RS15815: QEN71_RS15815 - siderophore-iron reductase FhuF, at 3,528,953 to 3,529,753 _RS15815 QEN71_RS15820: QEN71_RS15820 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 3,529,756 to 3,531,870 _RS15820 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3527.035 kb on + strand, within QEN71_RS15805at 3527.142 kb on + strand, within QEN71_RS15805at 3527.277 kb on + strand, within QEN71_RS15805at 3527.513 kb on + strand, within QEN71_RS15805at 3527.574 kb on + strand, within QEN71_RS15805at 3527.595 kb on + strand, within QEN71_RS15805at 3527.595 kb on + strand, within QEN71_RS15805at 3527.595 kb on + strand, within QEN71_RS15805at 3527.596 kb on - strand, within QEN71_RS15805at 3527.596 kb on - strand, within QEN71_RS15805at 3527.888 kb on + strandat 3527.889 kb on - strandat 3527.976 kb on - strandat 3527.976 kb on - strandat 3528.171 kb on + strand, within QEN71_RS15810at 3528.564 kb on - strand, within QEN71_RS15810at 3528.564 kb on - strand, within QEN71_RS15810at 3528.715 kb on + strand, within QEN71_RS15810at 3528.959 kb on + strandat 3528.959 kb on + strandat 3528.960 kb on - strandat 3528.960 kb on - strandat 3528.960 kb on - strandat 3529.002 kb on - strandat 3529.389 kb on + strand, within QEN71_RS15815at 3529.390 kb on - strand, within QEN71_RS15815at 3529.390 kb on - strand, within QEN71_RS15815at 3529.390 kb on - strand, within QEN71_RS15815at 3529.463 kb on + strand, within QEN71_RS15815at 3529.464 kb on - strand, within QEN71_RS15815at 3529.506 kb on + strand, within QEN71_RS15815at 3529.507 kb on - strand, within QEN71_RS15815at 3529.509 kb on + strand, within QEN71_RS15815at 3529.510 kb on - strand, within QEN71_RS15815at 3529.696 kb on - strandat 3529.696 kb on - strandat 3529.811 kb on + strandat 3529.938 kb on + strandat 3529.938 kb on + strandat 3529.938 kb on + strandat 3529.938 kb on + strandat 3529.938 kb on + strandat 3529.939 kb on - strandat 3529.939 kb on - strandat 3529.939 kb on - strandat 3529.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,527,035 + QEN71_RS15805 0.54 +0.4
3,527,142 + QEN71_RS15805 0.60 +1.8
3,527,277 + QEN71_RS15805 0.67 +1.4
3,527,513 + QEN71_RS15805 0.80 +0.9
3,527,574 + QEN71_RS15805 0.84 +0.8
3,527,595 + QEN71_RS15805 0.85 +0.8
3,527,595 + QEN71_RS15805 0.85 +1.1
3,527,595 + QEN71_RS15805 0.85 +0.6
3,527,596 - QEN71_RS15805 0.85 -0.2
3,527,596 - QEN71_RS15805 0.85 +1.5
3,527,888 + +0.6
3,527,889 - -0.3
3,527,976 - -0.4
3,527,976 - +1.1
3,528,171 + QEN71_RS15810 0.22 -1.5
3,528,564 - QEN71_RS15810 0.61 -1.8
3,528,564 - QEN71_RS15810 0.61 -3.9
3,528,715 + QEN71_RS15810 0.76 -1.9
3,528,959 + -2.5
3,528,959 + -0.6
3,528,960 - -1.8
3,528,960 - -3.2
3,528,960 - -0.4
3,529,002 - -1.6
3,529,389 + QEN71_RS15815 0.54 -1.5
3,529,390 - QEN71_RS15815 0.55 -0.5
3,529,390 - QEN71_RS15815 0.55 -0.8
3,529,390 - QEN71_RS15815 0.55 +0.1
3,529,463 + QEN71_RS15815 0.64 -0.7
3,529,464 - QEN71_RS15815 0.64 -1.5
3,529,506 + QEN71_RS15815 0.69 -0.4
3,529,507 - QEN71_RS15815 0.69 -1.5
3,529,509 + QEN71_RS15815 0.69 -2.2
3,529,510 - QEN71_RS15815 0.70 -0.9
3,529,696 - -1.6
3,529,696 - -0.5
3,529,811 + -1.1
3,529,938 + -0.2
3,529,938 + -1.3
3,529,938 + -1.7
3,529,938 + +1.1
3,529,938 + -0.3
3,529,939 - -1.3
3,529,939 - -0.9
3,529,939 - -1.5
3,529,939 - -1.2

Or see this region's nucleotide sequence