Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15745

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15740 and QEN71_RS15745 are separated by 449 nucleotidesQEN71_RS15745 and QEN71_RS15750 are separated by 508 nucleotides QEN71_RS15740: QEN71_RS15740 - cupin domain-containing protein, at 3,498,730 to 3,499,161 _RS15740 QEN71_RS15745: QEN71_RS15745 - DUF3331 domain-containing protein, at 3,499,611 to 3,499,934 _RS15745 QEN71_RS15750: QEN71_RS15750 - NAD(P)H-dependent oxidoreductase, at 3,500,443 to 3,501,114 _RS15750 Position (kb) 3499 3500Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3498.674 kb on + strandat 3498.675 kb on - strandat 3498.744 kb on + strandat 3498.745 kb on - strandat 3498.904 kb on + strand, within QEN71_RS15740at 3498.904 kb on + strand, within QEN71_RS15740at 3499.016 kb on - strand, within QEN71_RS15740at 3499.132 kb on - strandat 3499.159 kb on + strandat 3499.160 kb on - strandat 3499.202 kb on + strandat 3499.225 kb on - strandat 3499.269 kb on + strandat 3499.298 kb on - strandat 3499.307 kb on + strandat 3499.307 kb on + strandat 3499.308 kb on - strandat 3499.328 kb on + strandat 3499.330 kb on + strandat 3499.330 kb on + strandat 3499.330 kb on + strandat 3499.331 kb on - strandat 3499.331 kb on - strandat 3499.331 kb on - strandat 3499.331 kb on - strandat 3499.371 kb on + strandat 3499.587 kb on + strandat 3499.588 kb on - strandat 3499.588 kb on - strandat 3499.673 kb on + strand, within QEN71_RS15745at 3499.673 kb on + strand, within QEN71_RS15745at 3499.674 kb on - strand, within QEN71_RS15745at 3499.708 kb on + strand, within QEN71_RS15745at 3499.813 kb on + strand, within QEN71_RS15745at 3499.858 kb on - strand, within QEN71_RS15745at 3499.960 kb on - strandat 3499.964 kb on + strandat 3499.964 kb on + strandat 3499.965 kb on - strandat 3500.099 kb on + strandat 3500.124 kb on - strandat 3500.124 kb on - strandat 3500.558 kb on - strand, within QEN71_RS15750at 3500.617 kb on + strand, within QEN71_RS15750at 3500.618 kb on - strand, within QEN71_RS15750at 3500.618 kb on - strand, within QEN71_RS15750at 3500.618 kb on - strand, within QEN71_RS15750at 3500.618 kb on - strand, within QEN71_RS15750at 3500.728 kb on + strand, within QEN71_RS15750at 3500.729 kb on - strand, within QEN71_RS15750at 3500.790 kb on + strand, within QEN71_RS15750at 3500.794 kb on + strand, within QEN71_RS15750at 3500.794 kb on + strand, within QEN71_RS15750at 3500.796 kb on + strand, within QEN71_RS15750at 3500.796 kb on + strand, within QEN71_RS15750at 3500.797 kb on - strand, within QEN71_RS15750

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,498,674 + +2.9
3,498,675 - +1.2
3,498,744 + +1.5
3,498,745 - +1.5
3,498,904 + QEN71_RS15740 0.40 +2.0
3,498,904 + QEN71_RS15740 0.40 +2.0
3,499,016 - QEN71_RS15740 0.66 +1.0
3,499,132 - +0.9
3,499,159 + +3.0
3,499,160 - -0.0
3,499,202 + +2.6
3,499,225 - +0.6
3,499,269 + +3.0
3,499,298 - +0.5
3,499,307 + +3.2
3,499,307 + +3.1
3,499,308 - +0.3
3,499,328 + +3.1
3,499,330 + +3.4
3,499,330 + +3.2
3,499,330 + +3.2
3,499,331 - +1.7
3,499,331 - +1.7
3,499,331 - +0.7
3,499,331 - -1.0
3,499,371 + +3.2
3,499,587 + -0.2
3,499,588 - -1.7
3,499,588 - -1.0
3,499,673 + QEN71_RS15745 0.19 +0.1
3,499,673 + QEN71_RS15745 0.19 +0.3
3,499,674 - QEN71_RS15745 0.19 -1.8
3,499,708 + QEN71_RS15745 0.30 -0.3
3,499,813 + QEN71_RS15745 0.62 +0.1
3,499,858 - QEN71_RS15745 0.76 -0.7
3,499,960 - +0.5
3,499,964 + +1.1
3,499,964 + +1.3
3,499,965 - -0.6
3,500,099 + +1.3
3,500,124 - +0.1
3,500,124 - +0.4
3,500,558 - QEN71_RS15750 0.17 -0.7
3,500,617 + QEN71_RS15750 0.26 +0.5
3,500,618 - QEN71_RS15750 0.26 +0.5
3,500,618 - QEN71_RS15750 0.26 +0.1
3,500,618 - QEN71_RS15750 0.26 +1.3
3,500,618 - QEN71_RS15750 0.26 +0.4
3,500,728 + QEN71_RS15750 0.42 +0.8
3,500,729 - QEN71_RS15750 0.43 -1.7
3,500,790 + QEN71_RS15750 0.52 +0.9
3,500,794 + QEN71_RS15750 0.52 +0.5
3,500,794 + QEN71_RS15750 0.52 +0.6
3,500,796 + QEN71_RS15750 0.53 +0.5
3,500,796 + QEN71_RS15750 0.53 +0.1
3,500,797 - QEN71_RS15750 0.53 +0.0

Or see this region's nucleotide sequence