Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15305

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15300 and QEN71_RS15305 are separated by 165 nucleotidesQEN71_RS15305 and QEN71_RS15310 overlap by 1 nucleotides QEN71_RS15300: QEN71_RS15300 - ABC transporter permease, at 3,406,015 to 3,406,878 _RS15300 QEN71_RS15305: QEN71_RS15305 - heavy metal response regulator transcription factor, at 3,407,044 to 3,407,721 _RS15305 QEN71_RS15310: QEN71_RS15310 - heavy metal sensor histidine kinase, at 3,407,721 to 3,409,172 _RS15310 Position (kb) 3407 3408Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3406.561 kb on + strand, within QEN71_RS15300at 3406.561 kb on + strand, within QEN71_RS15300at 3406.822 kb on + strandat 3406.870 kb on - strandat 3406.908 kb on + strandat 3406.908 kb on + strandat 3406.909 kb on - strandat 3406.975 kb on - strandat 3406.975 kb on - strandat 3407.060 kb on + strandat 3407.086 kb on + strandat 3407.154 kb on + strand, within QEN71_RS15305at 3407.155 kb on - strand, within QEN71_RS15305at 3407.177 kb on - strand, within QEN71_RS15305at 3407.177 kb on - strand, within QEN71_RS15305at 3407.332 kb on + strand, within QEN71_RS15305at 3407.446 kb on - strand, within QEN71_RS15305at 3407.598 kb on + strand, within QEN71_RS15305at 3407.599 kb on - strand, within QEN71_RS15305at 3407.692 kb on + strandat 3407.693 kb on - strandat 3407.900 kb on + strand, within QEN71_RS15310at 3407.900 kb on + strand, within QEN71_RS15310at 3407.901 kb on - strand, within QEN71_RS15310at 3407.965 kb on + strand, within QEN71_RS15310at 3407.966 kb on - strand, within QEN71_RS15310at 3408.237 kb on + strand, within QEN71_RS15310at 3408.276 kb on + strand, within QEN71_RS15310at 3408.277 kb on - strand, within QEN71_RS15310at 3408.315 kb on + strand, within QEN71_RS15310at 3408.315 kb on + strand, within QEN71_RS15310at 3408.316 kb on - strand, within QEN71_RS15310at 3408.392 kb on - strand, within QEN71_RS15310at 3408.598 kb on - strand, within QEN71_RS15310

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,406,561 + QEN71_RS15300 0.63 +0.1
3,406,561 + QEN71_RS15300 0.63 -0.4
3,406,822 + -0.4
3,406,870 - -0.3
3,406,908 + +0.2
3,406,908 + +2.0
3,406,909 - -0.0
3,406,975 - -1.3
3,406,975 - -0.8
3,407,060 + -1.1
3,407,086 + -0.4
3,407,154 + QEN71_RS15305 0.16 -0.5
3,407,155 - QEN71_RS15305 0.16 +0.5
3,407,177 - QEN71_RS15305 0.20 -0.2
3,407,177 - QEN71_RS15305 0.20 -0.1
3,407,332 + QEN71_RS15305 0.42 +0.2
3,407,446 - QEN71_RS15305 0.59 +0.5
3,407,598 + QEN71_RS15305 0.82 -0.6
3,407,599 - QEN71_RS15305 0.82 +1.1
3,407,692 + +0.1
3,407,693 - +0.6
3,407,900 + QEN71_RS15310 0.12 -0.0
3,407,900 + QEN71_RS15310 0.12 -0.1
3,407,901 - QEN71_RS15310 0.12 +0.1
3,407,965 + QEN71_RS15310 0.17 +0.0
3,407,966 - QEN71_RS15310 0.17 -0.6
3,408,237 + QEN71_RS15310 0.36 -0.7
3,408,276 + QEN71_RS15310 0.38 -3.7
3,408,277 - QEN71_RS15310 0.38 -0.0
3,408,315 + QEN71_RS15310 0.41 +0.5
3,408,315 + QEN71_RS15310 0.41 -0.3
3,408,316 - QEN71_RS15310 0.41 +2.2
3,408,392 - QEN71_RS15310 0.46 -0.8
3,408,598 - QEN71_RS15310 0.60 -0.5

Or see this region's nucleotide sequence