Experiment: LB_noSalt with Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS15175 and QEN71_RS15180 are separated by 58 nucleotides QEN71_RS15180 and QEN71_RS15185 are separated by 192 nucleotides QEN71_RS15185 and QEN71_RS15190 are separated by 61 nucleotides QEN71_RS15190 and QEN71_RS15195 are separated by 31 nucleotides
QEN71_RS15175: QEN71_RS15175 - ATP-binding protein, at 3,377,901 to 3,379,241
_RS15175
QEN71_RS15180: QEN71_RS15180 - tRNA-Ile, at 3,379,300 to 3,379,387
_RS15180
QEN71_RS15185: QEN71_RS15185 - RNA polymerase sigma factor RpoD, at 3,379,580 to 3,381,625
_RS15185
QEN71_RS15190: QEN71_RS15190 - hypothetical protein, at 3,381,687 to 3,382,031
_RS15190
QEN71_RS15195: QEN71_RS15195 - DNA primase, at 3,382,063 to 3,383,943
_RS15195
Position (kb)
3379
3380
3381
3382 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3378.790 kb on + strand, within QEN71_RS15175 at 3378.791 kb on - strand, within QEN71_RS15175 at 3378.813 kb on - strand, within QEN71_RS15175 at 3378.886 kb on + strand, within QEN71_RS15175 at 3378.886 kb on + strand, within QEN71_RS15175 at 3378.886 kb on + strand, within QEN71_RS15175 at 3378.886 kb on + strand, within QEN71_RS15175 at 3378.886 kb on + strand, within QEN71_RS15175 at 3378.887 kb on - strand, within QEN71_RS15175 at 3378.887 kb on - strand, within QEN71_RS15175 at 3378.887 kb on - strand, within QEN71_RS15175 at 3378.888 kb on + strand, within QEN71_RS15175 at 3378.889 kb on - strand, within QEN71_RS15175 at 3378.979 kb on + strand, within QEN71_RS15175 at 3378.979 kb on + strand, within QEN71_RS15175 at 3378.979 kb on + strand, within QEN71_RS15175 at 3378.979 kb on + strand, within QEN71_RS15175 at 3378.980 kb on - strand, within QEN71_RS15175 at 3378.980 kb on - strand, within QEN71_RS15175 at 3378.980 kb on - strand, within QEN71_RS15175 at 3379.084 kb on - strand, within QEN71_RS15175 at 3379.138 kb on + strand at 3379.138 kb on + strand at 3379.288 kb on + strand at 3379.290 kb on + strand at 3379.291 kb on - strand at 3379.291 kb on - strand at 3379.496 kb on - strand at 3379.496 kb on - strand at 3379.496 kb on - strand at 3379.496 kb on - strand at 3379.499 kb on - strand at 3379.565 kb on + strand at 3379.566 kb on - strand at 3380.071 kb on + strand, within QEN71_RS15185 at 3380.072 kb on - strand, within QEN71_RS15185 at 3380.072 kb on - strand, within QEN71_RS15185 at 3380.136 kb on + strand, within QEN71_RS15185 at 3380.136 kb on + strand, within QEN71_RS15185 at 3380.137 kb on - strand, within QEN71_RS15185 at 3380.151 kb on + strand, within QEN71_RS15185 at 3380.152 kb on - strand, within QEN71_RS15185 at 3380.152 kb on - strand, within QEN71_RS15185 at 3380.245 kb on - strand, within QEN71_RS15185 at 3380.245 kb on - strand, within QEN71_RS15185 at 3380.245 kb on - strand, within QEN71_RS15185 at 3380.245 kb on - strand, within QEN71_RS15185 at 3380.245 kb on - strand, within QEN71_RS15185 at 3380.448 kb on + strand, within QEN71_RS15185 at 3380.448 kb on + strand, within QEN71_RS15185 at 3380.448 kb on + strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.449 kb on - strand, within QEN71_RS15185 at 3380.557 kb on + strand, within QEN71_RS15185 at 3380.558 kb on - strand, within QEN71_RS15185 at 3380.558 kb on - strand, within QEN71_RS15185 at 3380.632 kb on + strand, within QEN71_RS15185 at 3380.691 kb on + strand, within QEN71_RS15185 at 3380.692 kb on - strand, within QEN71_RS15185 at 3380.706 kb on + strand, within QEN71_RS15185 at 3380.706 kb on + strand, within QEN71_RS15185 at 3380.706 kb on + strand, within QEN71_RS15185 at 3380.706 kb on + strand, within QEN71_RS15185 at 3380.706 kb on + strand, within QEN71_RS15185 at 3380.706 kb on + strand, within QEN71_RS15185 at 3380.707 kb on - strand, within QEN71_RS15185 at 3380.707 kb on - strand, within QEN71_RS15185 at 3380.707 kb on - strand, within QEN71_RS15185 at 3380.707 kb on - strand, within QEN71_RS15185 at 3380.707 kb on - strand, within QEN71_RS15185 at 3380.707 kb on - strand, within QEN71_RS15185 at 3380.923 kb on + strand, within QEN71_RS15185 at 3380.923 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.138 kb on + strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.139 kb on - strand, within QEN71_RS15185 at 3381.142 kb on + strand, within QEN71_RS15185 at 3381.142 kb on + strand, within QEN71_RS15185 at 3381.142 kb on + strand, within QEN71_RS15185 at 3381.142 kb on + strand, within QEN71_RS15185 at 3381.142 kb on + strand, within QEN71_RS15185 at 3381.142 kb on + strand, within QEN71_RS15185 at 3381.143 kb on - strand, within QEN71_RS15185 at 3381.143 kb on - strand, within QEN71_RS15185 at 3381.143 kb on - strand, within QEN71_RS15185 at 3381.143 kb on - strand, within QEN71_RS15185 at 3381.285 kb on + strand, within QEN71_RS15185 at 3381.285 kb on + strand, within QEN71_RS15185 at 3381.285 kb on + strand, within QEN71_RS15185 at 3381.285 kb on + strand, within QEN71_RS15185 at 3381.286 kb on - strand, within QEN71_RS15185 at 3381.286 kb on - strand, within QEN71_RS15185 at 3381.381 kb on + strand, within QEN71_RS15185 at 3381.381 kb on + strand, within QEN71_RS15185 at 3381.382 kb on - strand, within QEN71_RS15185 at 3381.602 kb on + strand at 3381.602 kb on + strand at 3381.602 kb on + strand at 3381.603 kb on - strand at 3381.603 kb on - strand at 3381.603 kb on - strand at 3381.603 kb on - strand at 3381.646 kb on + strand at 3381.646 kb on + strand at 3381.646 kb on + strand at 3381.646 kb on + strand at 3381.647 kb on - strand at 3381.647 kb on - strand at 3381.647 kb on - strand at 3381.748 kb on + strand, within QEN71_RS15190 at 3381.871 kb on + strand, within QEN71_RS15190 at 3381.871 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.961 kb on + strand, within QEN71_RS15190 at 3381.962 kb on - strand, within QEN71_RS15190 at 3381.962 kb on - strand, within QEN71_RS15190 at 3381.968 kb on + strand, within QEN71_RS15190 at 3381.968 kb on + strand, within QEN71_RS15190 at 3381.987 kb on + strand, within QEN71_RS15190 at 3382.027 kb on + strand at 3382.027 kb on + strand at 3382.027 kb on + strand at 3382.027 kb on + strand at 3382.029 kb on + strand at 3382.029 kb on + strand at 3382.029 kb on + strand at 3382.030 kb on - strand at 3382.030 kb on - strand at 3382.030 kb on - strand at 3382.030 kb on - strand at 3382.030 kb on - strand at 3382.033 kb on + strand at 3382.033 kb on + strand at 3382.033 kb on + strand at 3382.033 kb on + strand at 3382.034 kb on - strand at 3382.034 kb on - strand at 3382.034 kb on - strand at 3382.034 kb on - strand at 3382.035 kb on + strand at 3382.035 kb on + strand at 3382.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM remove 3,378,790 + QEN71_RS15175 0.66 -0.6 3,378,791 - QEN71_RS15175 0.66 -0.5 3,378,813 - QEN71_RS15175 0.68 +0.1 3,378,886 + QEN71_RS15175 0.73 +0.5 3,378,886 + QEN71_RS15175 0.73 +0.2 3,378,886 + QEN71_RS15175 0.73 -1.2 3,378,886 + QEN71_RS15175 0.73 -0.3 3,378,886 + QEN71_RS15175 0.73 +0.0 3,378,887 - QEN71_RS15175 0.74 +2.1 3,378,887 - QEN71_RS15175 0.74 -1.3 3,378,887 - QEN71_RS15175 0.74 +0.2 3,378,888 + QEN71_RS15175 0.74 -0.4 3,378,889 - QEN71_RS15175 0.74 +0.2 3,378,979 + QEN71_RS15175 0.80 +1.4 3,378,979 + QEN71_RS15175 0.80 -0.9 3,378,979 + QEN71_RS15175 0.80 -0.6 3,378,979 + QEN71_RS15175 0.80 +0.0 3,378,980 - QEN71_RS15175 0.80 -0.3 3,378,980 - QEN71_RS15175 0.80 -1.6 3,378,980 - QEN71_RS15175 0.80 -0.3 3,379,084 - QEN71_RS15175 0.88 -0.3 3,379,138 + -0.7 3,379,138 + -1.3 3,379,288 + -0.7 3,379,290 + +0.2 3,379,291 - -0.7 3,379,291 - +0.5 3,379,496 - +0.0 3,379,496 - +1.1 3,379,496 - -0.2 3,379,496 - +0.4 3,379,499 - -0.1 3,379,565 + -0.1 3,379,566 - -0.7 3,380,071 + QEN71_RS15185 0.24 +0.7 3,380,072 - QEN71_RS15185 0.24 -0.2 3,380,072 - QEN71_RS15185 0.24 -0.7 3,380,136 + QEN71_RS15185 0.27 -1.2 3,380,136 + QEN71_RS15185 0.27 -0.9 3,380,137 - QEN71_RS15185 0.27 -0.7 3,380,151 + QEN71_RS15185 0.28 -0.7 3,380,152 - QEN71_RS15185 0.28 -1.3 3,380,152 - QEN71_RS15185 0.28 -0.6 3,380,245 - QEN71_RS15185 0.33 -4.1 3,380,245 - QEN71_RS15185 0.33 -2.7 3,380,245 - QEN71_RS15185 0.33 -2.5 3,380,245 - QEN71_RS15185 0.33 -0.9 3,380,245 - QEN71_RS15185 0.33 -1.3 3,380,448 + QEN71_RS15185 0.42 -2.5 3,380,448 + QEN71_RS15185 0.42 -0.6 3,380,448 + QEN71_RS15185 0.42 -0.5 3,380,449 - QEN71_RS15185 0.42 -1.8 3,380,449 - QEN71_RS15185 0.42 -1.4 3,380,449 - QEN71_RS15185 0.42 -2.5 3,380,449 - QEN71_RS15185 0.42 +1.3 3,380,449 - QEN71_RS15185 0.42 +0.1 3,380,449 - QEN71_RS15185 0.42 -1.7 3,380,449 - QEN71_RS15185 0.42 -2.3 3,380,449 - QEN71_RS15185 0.42 -2.2 3,380,449 - QEN71_RS15185 0.42 -2.7 3,380,449 - QEN71_RS15185 0.42 -1.8 3,380,449 - QEN71_RS15185 0.42 -1.4 3,380,449 - QEN71_RS15185 0.42 +0.0 3,380,557 + QEN71_RS15185 0.48 -2.6 3,380,558 - QEN71_RS15185 0.48 -2.9 3,380,558 - QEN71_RS15185 0.48 -0.9 3,380,632 + QEN71_RS15185 0.51 -0.5 3,380,691 + QEN71_RS15185 0.54 -1.4 3,380,692 - QEN71_RS15185 0.54 -2.2 3,380,706 + QEN71_RS15185 0.55 -1.4 3,380,706 + QEN71_RS15185 0.55 -2.4 3,380,706 + QEN71_RS15185 0.55 -3.6 3,380,706 + QEN71_RS15185 0.55 -1.3 3,380,706 + QEN71_RS15185 0.55 +0.3 3,380,706 + QEN71_RS15185 0.55 -1.6 3,380,707 - QEN71_RS15185 0.55 +0.1 3,380,707 - QEN71_RS15185 0.55 -1.9 3,380,707 - QEN71_RS15185 0.55 -1.3 3,380,707 - QEN71_RS15185 0.55 -1.9 3,380,707 - QEN71_RS15185 0.55 -3.0 3,380,707 - QEN71_RS15185 0.55 -1.9 3,380,923 + QEN71_RS15185 0.66 -0.9 3,380,923 + QEN71_RS15185 0.66 -1.1 3,381,138 + QEN71_RS15185 0.76 -1.8 3,381,138 + QEN71_RS15185 0.76 -2.5 3,381,138 + QEN71_RS15185 0.76 -2.1 3,381,138 + QEN71_RS15185 0.76 -0.3 3,381,138 + QEN71_RS15185 0.76 -2.6 3,381,138 + QEN71_RS15185 0.76 -3.0 3,381,138 + QEN71_RS15185 0.76 -1.1 3,381,138 + QEN71_RS15185 0.76 -0.9 3,381,138 + QEN71_RS15185 0.76 -1.4 3,381,138 + QEN71_RS15185 0.76 -2.4 3,381,138 + QEN71_RS15185 0.76 -1.1 3,381,138 + QEN71_RS15185 0.76 -2.7 3,381,138 + QEN71_RS15185 0.76 -0.6 3,381,138 + QEN71_RS15185 0.76 -1.6 3,381,138 + QEN71_RS15185 0.76 -1.7 3,381,138 + QEN71_RS15185 0.76 -1.5 3,381,138 + QEN71_RS15185 0.76 -0.5 3,381,138 + QEN71_RS15185 0.76 -2.6 3,381,138 + QEN71_RS15185 0.76 -1.3 3,381,138 + QEN71_RS15185 0.76 -1.0 3,381,138 + QEN71_RS15185 0.76 -1.9 3,381,138 + QEN71_RS15185 0.76 -0.7 3,381,139 - QEN71_RS15185 0.76 -1.1 3,381,139 - QEN71_RS15185 0.76 -2.9 3,381,139 - QEN71_RS15185 0.76 -1.2 3,381,139 - QEN71_RS15185 0.76 +1.0 3,381,139 - QEN71_RS15185 0.76 +1.7 3,381,139 - QEN71_RS15185 0.76 -0.7 3,381,139 - QEN71_RS15185 0.76 +0.1 3,381,139 - QEN71_RS15185 0.76 -1.2 3,381,139 - QEN71_RS15185 0.76 -1.3 3,381,139 - QEN71_RS15185 0.76 -1.4 3,381,139 - QEN71_RS15185 0.76 -1.2 3,381,139 - QEN71_RS15185 0.76 -2.7 3,381,139 - QEN71_RS15185 0.76 -1.7 3,381,139 - QEN71_RS15185 0.76 -2.4 3,381,139 - QEN71_RS15185 0.76 -4.3 3,381,139 - QEN71_RS15185 0.76 +0.3 3,381,139 - QEN71_RS15185 0.76 -1.3 3,381,139 - QEN71_RS15185 0.76 -0.5 3,381,139 - QEN71_RS15185 0.76 -1.6 3,381,139 - QEN71_RS15185 0.76 -2.5 3,381,139 - QEN71_RS15185 0.76 -2.7 3,381,139 - QEN71_RS15185 0.76 -3.3 3,381,139 - QEN71_RS15185 0.76 -2.9 3,381,139 - QEN71_RS15185 0.76 -0.4 3,381,139 - QEN71_RS15185 0.76 -1.9 3,381,139 - QEN71_RS15185 0.76 +0.7 3,381,139 - QEN71_RS15185 0.76 -2.2 3,381,142 + QEN71_RS15185 0.76 -1.3 3,381,142 + QEN71_RS15185 0.76 -1.6 3,381,142 + QEN71_RS15185 0.76 -1.7 3,381,142 + QEN71_RS15185 0.76 -0.7 3,381,142 + QEN71_RS15185 0.76 -1.6 3,381,142 + QEN71_RS15185 0.76 -2.1 3,381,143 - QEN71_RS15185 0.76 -1.6 3,381,143 - QEN71_RS15185 0.76 -1.3 3,381,143 - QEN71_RS15185 0.76 -1.0 3,381,143 - QEN71_RS15185 0.76 +0.3 3,381,285 + QEN71_RS15185 0.83 -1.2 3,381,285 + QEN71_RS15185 0.83 -2.3 3,381,285 + QEN71_RS15185 0.83 -0.4 3,381,285 + QEN71_RS15185 0.83 -0.3 3,381,286 - QEN71_RS15185 0.83 -1.8 3,381,286 - QEN71_RS15185 0.83 -2.7 3,381,381 + QEN71_RS15185 0.88 -0.7 3,381,381 + QEN71_RS15185 0.88 -2.4 3,381,382 - QEN71_RS15185 0.88 -2.9 3,381,602 + -2.2 3,381,602 + -1.6 3,381,602 + -1.7 3,381,603 - -0.7 3,381,603 - -2.3 3,381,603 - -0.5 3,381,603 - -0.7 3,381,646 + +2.7 3,381,646 + -1.7 3,381,646 + +0.1 3,381,646 + -1.3 3,381,647 - +1.1 3,381,647 - -0.2 3,381,647 - +0.5 3,381,748 + QEN71_RS15190 0.18 -0.3 3,381,871 + QEN71_RS15190 0.53 +0.1 3,381,871 + QEN71_RS15190 0.53 -2.8 3,381,961 + QEN71_RS15190 0.79 -1.4 3,381,961 + QEN71_RS15190 0.79 -2.5 3,381,961 + QEN71_RS15190 0.79 -0.9 3,381,961 + QEN71_RS15190 0.79 -1.3 3,381,961 + QEN71_RS15190 0.79 -1.9 3,381,961 + QEN71_RS15190 0.79 -3.1 3,381,961 + QEN71_RS15190 0.79 -2.1 3,381,961 + QEN71_RS15190 0.79 -0.5 3,381,961 + QEN71_RS15190 0.79 -0.9 3,381,962 - QEN71_RS15190 0.80 +0.7 3,381,962 - QEN71_RS15190 0.80 -0.6 3,381,968 + QEN71_RS15190 0.81 -1.2 3,381,968 + QEN71_RS15190 0.81 -1.6 3,381,987 + QEN71_RS15190 0.87 -1.1 3,382,027 + -1.5 3,382,027 + +0.5 3,382,027 + -1.5 3,382,027 + -1.3 3,382,029 + -2.9 3,382,029 + -1.5 3,382,029 + +2.6 3,382,030 - +0.8 3,382,030 - -0.2 3,382,030 - -0.2 3,382,030 - +0.5 3,382,030 - +2.1 3,382,033 + -1.7 3,382,033 + -1.5 3,382,033 + -2.0 3,382,033 + -2.0 3,382,034 - +1.0 3,382,034 - +0.1 3,382,034 - +0.4 3,382,034 - +0.0 3,382,035 + -2.8 3,382,035 + -1.0 3,382,036 - +1.0
Or see this region's nucleotide sequence