Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14360

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14355 and QEN71_RS14360 overlap by 4 nucleotidesQEN71_RS14360 and QEN71_RS14365 overlap by 4 nucleotidesQEN71_RS14365 and QEN71_RS14370 overlap by 4 nucleotides QEN71_RS14355: QEN71_RS14355 - MoxR family ATPase, at 3,203,179 to 3,204,198 _RS14355 QEN71_RS14360: QEN71_RS14360 - MxaS protein, at 3,204,195 to 3,205,070 _RS14360 QEN71_RS14365: QEN71_RS14365 - hypothetical protein, at 3,205,067 to 3,205,942 _RS14365 QEN71_RS14370: QEN71_RS14370 - vWA domain-containing protein, at 3,205,939 to 3,206,937 _RS14370 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -2 -1 0 1 2at 3203.195 kb on + strandat 3203.195 kb on + strandat 3203.196 kb on - strandat 3203.196 kb on - strandat 3203.443 kb on + strand, within QEN71_RS14355at 3203.443 kb on + strand, within QEN71_RS14355at 3203.443 kb on + strand, within QEN71_RS14355at 3203.443 kb on + strand, within QEN71_RS14355at 3203.443 kb on + strand, within QEN71_RS14355at 3203.443 kb on + strand, within QEN71_RS14355at 3203.444 kb on - strand, within QEN71_RS14355at 3203.444 kb on - strand, within QEN71_RS14355at 3203.444 kb on - strand, within QEN71_RS14355at 3203.444 kb on - strand, within QEN71_RS14355at 3203.444 kb on - strand, within QEN71_RS14355at 3203.444 kb on - strand, within QEN71_RS14355at 3203.625 kb on + strand, within QEN71_RS14355at 3203.626 kb on - strand, within QEN71_RS14355at 3203.626 kb on - strand, within QEN71_RS14355at 3203.719 kb on - strand, within QEN71_RS14355at 3203.838 kb on + strand, within QEN71_RS14355at 3203.839 kb on - strand, within QEN71_RS14355at 3203.839 kb on - strand, within QEN71_RS14355at 3203.904 kb on + strand, within QEN71_RS14355at 3203.904 kb on + strand, within QEN71_RS14355at 3204.055 kb on + strand, within QEN71_RS14355at 3204.055 kb on + strand, within QEN71_RS14355at 3204.056 kb on - strand, within QEN71_RS14355at 3204.056 kb on - strand, within QEN71_RS14355at 3204.083 kb on + strand, within QEN71_RS14355at 3204.084 kb on - strand, within QEN71_RS14355at 3204.112 kb on + strandat 3204.112 kb on + strandat 3204.112 kb on + strandat 3204.512 kb on + strand, within QEN71_RS14360at 3205.116 kb on + strandat 3205.913 kb on + strandat 3205.913 kb on + strandat 3206.035 kb on + strandat 3206.035 kb on + strandat 3206.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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3,203,195 + -0.9
3,203,195 + -0.1
3,203,196 - -0.4
3,203,196 - -0.4
3,203,443 + QEN71_RS14355 0.26 +0.2
3,203,443 + QEN71_RS14355 0.26 -0.0
3,203,443 + QEN71_RS14355 0.26 -1.3
3,203,443 + QEN71_RS14355 0.26 -1.9
3,203,443 + QEN71_RS14355 0.26 -0.8
3,203,443 + QEN71_RS14355 0.26 +0.4
3,203,444 - QEN71_RS14355 0.26 -0.1
3,203,444 - QEN71_RS14355 0.26 -1.4
3,203,444 - QEN71_RS14355 0.26 +0.5
3,203,444 - QEN71_RS14355 0.26 -0.4
3,203,444 - QEN71_RS14355 0.26 -0.2
3,203,444 - QEN71_RS14355 0.26 -1.0
3,203,625 + QEN71_RS14355 0.44 -1.7
3,203,626 - QEN71_RS14355 0.44 +0.1
3,203,626 - QEN71_RS14355 0.44 +0.6
3,203,719 - QEN71_RS14355 0.53 -0.9
3,203,838 + QEN71_RS14355 0.65 +1.5
3,203,839 - QEN71_RS14355 0.65 +0.3
3,203,839 - QEN71_RS14355 0.65 +0.6
3,203,904 + QEN71_RS14355 0.71 -0.8
3,203,904 + QEN71_RS14355 0.71 -0.4
3,204,055 + QEN71_RS14355 0.86 -0.1
3,204,055 + QEN71_RS14355 0.86 +0.8
3,204,056 - QEN71_RS14355 0.86 -1.4
3,204,056 - QEN71_RS14355 0.86 -0.6
3,204,083 + QEN71_RS14355 0.89 +0.8
3,204,084 - QEN71_RS14355 0.89 -0.7
3,204,112 + +1.8
3,204,112 + -0.4
3,204,112 + +0.3
3,204,512 + QEN71_RS14360 0.36 -1.4
3,205,116 + -0.2
3,205,913 + -1.2
3,205,913 + +0.2
3,206,035 + -0.2
3,206,035 + +0.2
3,206,036 - -0.2

Or see this region's nucleotide sequence