Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS13200

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS13195 and QEN71_RS13200 are separated by 173 nucleotidesQEN71_RS13200 and QEN71_RS13205 are separated by 69 nucleotides QEN71_RS13195: QEN71_RS13195 - 2-dehydropantoate 2-reductase, at 2,953,456 to 2,954,484 _RS13195 QEN71_RS13200: QEN71_RS13200 - fumarylacetoacetate hydrolase family protein, at 2,954,658 to 2,955,455 _RS13200 QEN71_RS13205: QEN71_RS13205 - formyl-CoA transferase, at 2,955,525 to 2,956,772 _RS13205 Position (kb) 2954 2955 2956Strain fitness (log2 ratio) -2 -1 0 1 2at 2954.006 kb on + strand, within QEN71_RS13195at 2954.006 kb on + strand, within QEN71_RS13195at 2954.006 kb on + strand, within QEN71_RS13195at 2954.007 kb on - strand, within QEN71_RS13195at 2954.051 kb on + strand, within QEN71_RS13195at 2954.156 kb on + strand, within QEN71_RS13195at 2954.157 kb on - strand, within QEN71_RS13195at 2954.157 kb on - strand, within QEN71_RS13195at 2954.157 kb on - strand, within QEN71_RS13195at 2954.157 kb on - strand, within QEN71_RS13195at 2954.157 kb on - strand, within QEN71_RS13195at 2954.162 kb on + strand, within QEN71_RS13195at 2954.162 kb on + strand, within QEN71_RS13195at 2954.162 kb on + strand, within QEN71_RS13195at 2954.163 kb on - strand, within QEN71_RS13195at 2954.163 kb on - strand, within QEN71_RS13195at 2954.276 kb on + strand, within QEN71_RS13195at 2954.276 kb on + strand, within QEN71_RS13195at 2954.276 kb on + strand, within QEN71_RS13195at 2954.277 kb on - strand, within QEN71_RS13195at 2954.277 kb on - strand, within QEN71_RS13195at 2954.317 kb on + strand, within QEN71_RS13195at 2954.317 kb on + strand, within QEN71_RS13195at 2954.317 kb on + strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.318 kb on - strand, within QEN71_RS13195at 2954.337 kb on + strand, within QEN71_RS13195at 2954.364 kb on + strand, within QEN71_RS13195at 2954.444 kb on + strandat 2954.444 kb on + strandat 2954.444 kb on + strandat 2954.444 kb on + strandat 2954.444 kb on + strandat 2954.444 kb on + strandat 2954.445 kb on - strandat 2954.445 kb on - strandat 2954.445 kb on - strandat 2954.445 kb on - strandat 2954.445 kb on - strandat 2954.468 kb on + strandat 2954.469 kb on - strandat 2954.469 kb on - strandat 2954.486 kb on + strandat 2954.486 kb on + strandat 2954.486 kb on + strandat 2954.486 kb on + strandat 2954.486 kb on + strandat 2954.487 kb on - strandat 2954.487 kb on - strandat 2954.487 kb on - strandat 2954.487 kb on - strandat 2954.869 kb on + strand, within QEN71_RS13200at 2954.869 kb on + strand, within QEN71_RS13200at 2954.869 kb on + strand, within QEN71_RS13200at 2954.870 kb on - strand, within QEN71_RS13200at 2954.870 kb on - strand, within QEN71_RS13200at 2955.041 kb on + strand, within QEN71_RS13200at 2955.041 kb on + strand, within QEN71_RS13200at 2955.042 kb on - strand, within QEN71_RS13200at 2955.042 kb on - strand, within QEN71_RS13200at 2955.042 kb on - strand, within QEN71_RS13200at 2955.047 kb on + strand, within QEN71_RS13200at 2955.047 kb on + strand, within QEN71_RS13200at 2955.047 kb on + strand, within QEN71_RS13200at 2955.047 kb on + strand, within QEN71_RS13200at 2955.048 kb on - strand, within QEN71_RS13200at 2955.048 kb on - strand, within QEN71_RS13200at 2955.048 kb on - strand, within QEN71_RS13200at 2955.049 kb on + strand, within QEN71_RS13200at 2955.050 kb on - strand, within QEN71_RS13200at 2955.050 kb on - strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.061 kb on + strand, within QEN71_RS13200at 2955.062 kb on - strand, within QEN71_RS13200at 2955.062 kb on - strand, within QEN71_RS13200at 2955.062 kb on - strand, within QEN71_RS13200at 2955.130 kb on + strand, within QEN71_RS13200at 2955.130 kb on + strand, within QEN71_RS13200at 2955.130 kb on + strand, within QEN71_RS13200at 2955.131 kb on - strand, within QEN71_RS13200at 2955.131 kb on - strand, within QEN71_RS13200at 2955.131 kb on - strand, within QEN71_RS13200at 2955.147 kb on - strand, within QEN71_RS13200at 2955.147 kb on - strand, within QEN71_RS13200at 2955.149 kb on - strand, within QEN71_RS13200at 2955.149 kb on - strand, within QEN71_RS13200at 2955.442 kb on - strandat 2955.500 kb on - strandat 2955.677 kb on - strand, within QEN71_RS13205at 2955.677 kb on - strand, within QEN71_RS13205at 2955.722 kb on + strand, within QEN71_RS13205at 2955.722 kb on + strand, within QEN71_RS13205at 2955.784 kb on + strand, within QEN71_RS13205at 2955.784 kb on + strand, within QEN71_RS13205at 2955.785 kb on - strand, within QEN71_RS13205at 2955.785 kb on - strand, within QEN71_RS13205at 2955.785 kb on - strand, within QEN71_RS13205at 2955.893 kb on - strand, within QEN71_RS13205at 2955.970 kb on + strand, within QEN71_RS13205at 2955.970 kb on + strand, within QEN71_RS13205at 2955.970 kb on + strand, within QEN71_RS13205at 2955.970 kb on + strand, within QEN71_RS13205at 2955.971 kb on - strand, within QEN71_RS13205at 2955.971 kb on - strand, within QEN71_RS13205at 2955.971 kb on - strand, within QEN71_RS13205at 2955.971 kb on - strand, within QEN71_RS13205at 2955.971 kb on - strand, within QEN71_RS13205at 2955.976 kb on + strand, within QEN71_RS13205at 2955.976 kb on + strand, within QEN71_RS13205at 2955.977 kb on - strand, within QEN71_RS13205at 2955.977 kb on - strand, within QEN71_RS13205at 2955.977 kb on - strand, within QEN71_RS13205at 2955.977 kb on - strand, within QEN71_RS13205at 2955.977 kb on - strand, within QEN71_RS13205at 2956.046 kb on + strand, within QEN71_RS13205at 2956.047 kb on - strand, within QEN71_RS13205at 2956.047 kb on - strand, within QEN71_RS13205at 2956.223 kb on - strand, within QEN71_RS13205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,954,006 + QEN71_RS13195 0.53 -0.8
2,954,006 + QEN71_RS13195 0.53 -0.6
2,954,006 + QEN71_RS13195 0.53 +0.1
2,954,007 - QEN71_RS13195 0.54 -0.5
2,954,051 + QEN71_RS13195 0.58 +0.4
2,954,156 + QEN71_RS13195 0.68 -1.6
2,954,157 - QEN71_RS13195 0.68 +0.2
2,954,157 - QEN71_RS13195 0.68 -0.9
2,954,157 - QEN71_RS13195 0.68 -1.7
2,954,157 - QEN71_RS13195 0.68 -0.3
2,954,157 - QEN71_RS13195 0.68 +0.6
2,954,162 + QEN71_RS13195 0.69 -0.6
2,954,162 + QEN71_RS13195 0.69 +1.2
2,954,162 + QEN71_RS13195 0.69 +0.6
2,954,163 - QEN71_RS13195 0.69 -0.6
2,954,163 - QEN71_RS13195 0.69 -1.2
2,954,276 + QEN71_RS13195 0.80 +0.2
2,954,276 + QEN71_RS13195 0.80 -1.7
2,954,276 + QEN71_RS13195 0.80 -1.7
2,954,277 - QEN71_RS13195 0.80 +0.4
2,954,277 - QEN71_RS13195 0.80 +0.1
2,954,317 + QEN71_RS13195 0.84 +0.0
2,954,317 + QEN71_RS13195 0.84 -0.1
2,954,317 + QEN71_RS13195 0.84 +0.8
2,954,318 - QEN71_RS13195 0.84 -0.4
2,954,318 - QEN71_RS13195 0.84 +0.2
2,954,318 - QEN71_RS13195 0.84 +0.3
2,954,318 - QEN71_RS13195 0.84 -1.4
2,954,318 - QEN71_RS13195 0.84 -0.2
2,954,318 - QEN71_RS13195 0.84 +0.3
2,954,318 - QEN71_RS13195 0.84 -0.9
2,954,318 - QEN71_RS13195 0.84 -0.7
2,954,318 - QEN71_RS13195 0.84 +0.0
2,954,318 - QEN71_RS13195 0.84 -0.0
2,954,318 - QEN71_RS13195 0.84 -1.7
2,954,337 + QEN71_RS13195 0.86 +0.9
2,954,364 + QEN71_RS13195 0.88 -0.1
2,954,444 + -1.0
2,954,444 + +0.2
2,954,444 + -1.0
2,954,444 + +0.2
2,954,444 + +0.0
2,954,444 + +0.2
2,954,445 - -0.1
2,954,445 - +1.4
2,954,445 - +0.3
2,954,445 - -0.5
2,954,445 - +1.5
2,954,468 + +1.6
2,954,469 - -2.0
2,954,469 - -0.5
2,954,486 + -1.0
2,954,486 + -0.2
2,954,486 + -1.3
2,954,486 + -1.7
2,954,486 + -0.5
2,954,487 - -0.5
2,954,487 - +1.8
2,954,487 - -0.3
2,954,487 - -0.1
2,954,869 + QEN71_RS13200 0.26 +0.4
2,954,869 + QEN71_RS13200 0.26 -0.1
2,954,869 + QEN71_RS13200 0.26 -1.0
2,954,870 - QEN71_RS13200 0.27 -0.7
2,954,870 - QEN71_RS13200 0.27 -0.1
2,955,041 + QEN71_RS13200 0.48 +0.4
2,955,041 + QEN71_RS13200 0.48 +0.3
2,955,042 - QEN71_RS13200 0.48 -1.5
2,955,042 - QEN71_RS13200 0.48 +0.5
2,955,042 - QEN71_RS13200 0.48 -0.0
2,955,047 + QEN71_RS13200 0.49 +0.6
2,955,047 + QEN71_RS13200 0.49 -1.3
2,955,047 + QEN71_RS13200 0.49 -0.1
2,955,047 + QEN71_RS13200 0.49 +0.8
2,955,048 - QEN71_RS13200 0.49 +0.9
2,955,048 - QEN71_RS13200 0.49 +1.5
2,955,048 - QEN71_RS13200 0.49 -0.4
2,955,049 + QEN71_RS13200 0.49 -0.4
2,955,050 - QEN71_RS13200 0.49 -0.1
2,955,050 - QEN71_RS13200 0.49 +0.5
2,955,061 + QEN71_RS13200 0.51 +0.2
2,955,061 + QEN71_RS13200 0.51 +0.1
2,955,061 + QEN71_RS13200 0.51 +0.4
2,955,061 + QEN71_RS13200 0.51 +1.4
2,955,061 + QEN71_RS13200 0.51 +0.5
2,955,061 + QEN71_RS13200 0.51 -0.7
2,955,061 + QEN71_RS13200 0.51 +0.6
2,955,061 + QEN71_RS13200 0.51 -1.5
2,955,061 + QEN71_RS13200 0.51 -0.0
2,955,062 - QEN71_RS13200 0.51 +0.9
2,955,062 - QEN71_RS13200 0.51 -1.0
2,955,062 - QEN71_RS13200 0.51 -1.1
2,955,130 + QEN71_RS13200 0.59 +0.5
2,955,130 + QEN71_RS13200 0.59 -0.8
2,955,130 + QEN71_RS13200 0.59 -0.4
2,955,131 - QEN71_RS13200 0.59 -1.2
2,955,131 - QEN71_RS13200 0.59 +1.1
2,955,131 - QEN71_RS13200 0.59 -1.4
2,955,147 - QEN71_RS13200 0.61 +0.0
2,955,147 - QEN71_RS13200 0.61 +0.1
2,955,149 - QEN71_RS13200 0.62 -2.0
2,955,149 - QEN71_RS13200 0.62 -0.1
2,955,442 - -0.2
2,955,500 - +0.0
2,955,677 - QEN71_RS13205 0.12 -0.4
2,955,677 - QEN71_RS13205 0.12 +0.2
2,955,722 + QEN71_RS13205 0.16 +0.4
2,955,722 + QEN71_RS13205 0.16 -0.6
2,955,784 + QEN71_RS13205 0.21 +0.2
2,955,784 + QEN71_RS13205 0.21 -0.2
2,955,785 - QEN71_RS13205 0.21 +0.9
2,955,785 - QEN71_RS13205 0.21 +1.2
2,955,785 - QEN71_RS13205 0.21 +0.4
2,955,893 - QEN71_RS13205 0.29 +0.8
2,955,970 + QEN71_RS13205 0.36 -1.0
2,955,970 + QEN71_RS13205 0.36 +0.0
2,955,970 + QEN71_RS13205 0.36 -0.6
2,955,970 + QEN71_RS13205 0.36 -0.4
2,955,971 - QEN71_RS13205 0.36 -0.2
2,955,971 - QEN71_RS13205 0.36 +1.3
2,955,971 - QEN71_RS13205 0.36 +0.5
2,955,971 - QEN71_RS13205 0.36 -0.1
2,955,971 - QEN71_RS13205 0.36 -0.4
2,955,976 + QEN71_RS13205 0.36 -0.4
2,955,976 + QEN71_RS13205 0.36 +1.5
2,955,977 - QEN71_RS13205 0.36 +0.4
2,955,977 - QEN71_RS13205 0.36 -0.8
2,955,977 - QEN71_RS13205 0.36 -0.4
2,955,977 - QEN71_RS13205 0.36 +0.7
2,955,977 - QEN71_RS13205 0.36 +0.8
2,956,046 + QEN71_RS13205 0.42 -0.8
2,956,047 - QEN71_RS13205 0.42 +0.3
2,956,047 - QEN71_RS13205 0.42 -0.1
2,956,223 - QEN71_RS13205 0.56 -0.8

Or see this region's nucleotide sequence