Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12715

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12710 and QEN71_RS12715 are separated by 237 nucleotidesQEN71_RS12715 and QEN71_RS12720 overlap by 4 nucleotides QEN71_RS12710: QEN71_RS12710 - M20 family metallopeptidase, at 2,844,279 to 2,845,547 _RS12710 QEN71_RS12715: QEN71_RS12715 - DUF305 domain-containing protein, at 2,845,785 to 2,846,252 _RS12715 QEN71_RS12720: QEN71_RS12720 - YncE family protein, at 2,846,249 to 2,847,736 _RS12720 Position (kb) 2845 2846 2847Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2844.803 kb on + strand, within QEN71_RS12710at 2844.811 kb on - strand, within QEN71_RS12710at 2844.811 kb on - strand, within QEN71_RS12710at 2844.811 kb on - strand, within QEN71_RS12710at 2845.188 kb on + strand, within QEN71_RS12710at 2845.188 kb on + strand, within QEN71_RS12710at 2845.481 kb on - strandat 2845.481 kb on - strandat 2845.581 kb on - strandat 2845.683 kb on + strandat 2845.756 kb on + strandat 2845.756 kb on + strandat 2845.855 kb on + strand, within QEN71_RS12715at 2845.856 kb on - strand, within QEN71_RS12715at 2846.231 kb on + strandat 2846.231 kb on + strandat 2846.232 kb on - strandat 2846.232 kb on - strandat 2846.382 kb on - strandat 2846.492 kb on + strand, within QEN71_RS12720at 2846.492 kb on + strand, within QEN71_RS12720at 2846.493 kb on - strand, within QEN71_RS12720at 2846.493 kb on - strand, within QEN71_RS12720at 2846.591 kb on - strand, within QEN71_RS12720at 2846.622 kb on - strand, within QEN71_RS12720at 2846.699 kb on + strand, within QEN71_RS12720at 2846.699 kb on + strand, within QEN71_RS12720at 2846.699 kb on + strand, within QEN71_RS12720at 2846.699 kb on + strand, within QEN71_RS12720at 2846.727 kb on - strand, within QEN71_RS12720at 2846.727 kb on - strand, within QEN71_RS12720at 2846.795 kb on + strand, within QEN71_RS12720at 2846.795 kb on + strand, within QEN71_RS12720at 2846.802 kb on - strand, within QEN71_RS12720at 2847.066 kb on - strand, within QEN71_RS12720at 2847.066 kb on - strand, within QEN71_RS12720at 2847.066 kb on - strand, within QEN71_RS12720at 2847.099 kb on + strand, within QEN71_RS12720at 2847.099 kb on + strand, within QEN71_RS12720at 2847.163 kb on - strand, within QEN71_RS12720at 2847.191 kb on + strand, within QEN71_RS12720at 2847.191 kb on + strand, within QEN71_RS12720at 2847.191 kb on + strand, within QEN71_RS12720at 2847.192 kb on - strand, within QEN71_RS12720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,844,803 + QEN71_RS12710 0.41 -0.8
2,844,811 - QEN71_RS12710 0.42 -1.0
2,844,811 - QEN71_RS12710 0.42 -2.0
2,844,811 - QEN71_RS12710 0.42 -0.4
2,845,188 + QEN71_RS12710 0.72 -0.7
2,845,188 + QEN71_RS12710 0.72 -0.5
2,845,481 - -0.3
2,845,481 - +0.5
2,845,581 - +0.0
2,845,683 + +0.3
2,845,756 + -0.0
2,845,756 + +0.4
2,845,855 + QEN71_RS12715 0.15 -2.2
2,845,856 - QEN71_RS12715 0.15 -1.3
2,846,231 + -0.4
2,846,231 + -0.4
2,846,232 - +0.1
2,846,232 - -0.0
2,846,382 - +0.4
2,846,492 + QEN71_RS12720 0.16 +0.9
2,846,492 + QEN71_RS12720 0.16 -0.6
2,846,493 - QEN71_RS12720 0.16 -1.8
2,846,493 - QEN71_RS12720 0.16 -0.1
2,846,591 - QEN71_RS12720 0.23 -1.3
2,846,622 - QEN71_RS12720 0.25 +1.0
2,846,699 + QEN71_RS12720 0.30 -1.3
2,846,699 + QEN71_RS12720 0.30 -0.8
2,846,699 + QEN71_RS12720 0.30 -0.6
2,846,699 + QEN71_RS12720 0.30 -0.7
2,846,727 - QEN71_RS12720 0.32 +0.1
2,846,727 - QEN71_RS12720 0.32 +2.0
2,846,795 + QEN71_RS12720 0.37 +0.2
2,846,795 + QEN71_RS12720 0.37 +0.2
2,846,802 - QEN71_RS12720 0.37 -0.3
2,847,066 - QEN71_RS12720 0.55 +0.2
2,847,066 - QEN71_RS12720 0.55 +0.2
2,847,066 - QEN71_RS12720 0.55 -0.4
2,847,099 + QEN71_RS12720 0.57 -0.3
2,847,099 + QEN71_RS12720 0.57 -0.2
2,847,163 - QEN71_RS12720 0.61 +0.7
2,847,191 + QEN71_RS12720 0.63 -0.3
2,847,191 + QEN71_RS12720 0.63 -3.5
2,847,191 + QEN71_RS12720 0.63 -0.5
2,847,192 - QEN71_RS12720 0.63 +1.2

Or see this region's nucleotide sequence