Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12045

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12035 and QEN71_RS12040 are separated by 25 nucleotidesQEN71_RS12040 and QEN71_RS12045 are separated by 15 nucleotidesQEN71_RS12045 and QEN71_RS12050 are separated by 22 nucleotidesQEN71_RS12050 and QEN71_RS12055 are separated by 8 nucleotides QEN71_RS12035: QEN71_RS12035 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 2,682,548 to 2,684,008 _RS12035 QEN71_RS12040: QEN71_RS12040 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 2,684,034 to 2,684,897 _RS12040 QEN71_RS12045: QEN71_RS12045 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 2,684,913 to 2,685,311 _RS12045 QEN71_RS12050: QEN71_RS12050 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 2,685,334 to 2,686,137 _RS12050 QEN71_RS12055: QEN71_RS12055 - 4-hydroxy-2-oxoheptanedioate aldolase, at 2,686,146 to 2,686,961 _RS12055 Position (kb) 2684 2685 2686Strain fitness (log2 ratio) -2 -1 0 1at 2683.924 kb on + strandat 2683.934 kb on + strandat 2683.969 kb on - strandat 2684.063 kb on - strandat 2684.223 kb on + strand, within QEN71_RS12040at 2684.224 kb on - strand, within QEN71_RS12040at 2684.224 kb on - strand, within QEN71_RS12040at 2684.259 kb on + strand, within QEN71_RS12040at 2684.294 kb on + strand, within QEN71_RS12040at 2684.430 kb on + strand, within QEN71_RS12040at 2684.480 kb on + strand, within QEN71_RS12040at 2684.481 kb on - strand, within QEN71_RS12040at 2684.481 kb on - strand, within QEN71_RS12040at 2684.481 kb on - strand, within QEN71_RS12040at 2684.727 kb on + strand, within QEN71_RS12040at 2684.727 kb on + strand, within QEN71_RS12040at 2684.810 kb on + strand, within QEN71_RS12040at 2684.810 kb on + strand, within QEN71_RS12040at 2684.811 kb on - strandat 2684.935 kb on - strandat 2685.031 kb on - strand, within QEN71_RS12045at 2685.075 kb on + strand, within QEN71_RS12045at 2685.338 kb on + strandat 2685.339 kb on - strandat 2685.592 kb on - strand, within QEN71_RS12050at 2685.911 kb on - strand, within QEN71_RS12050at 2686.084 kb on - strandat 2686.099 kb on + strandat 2686.100 kb on - strandat 2686.163 kb on + strandat 2686.164 kb on - strandat 2686.307 kb on + strand, within QEN71_RS12055at 2686.307 kb on + strand, within QEN71_RS12055at 2686.307 kb on + strand, within QEN71_RS12055

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,683,924 + -0.5
2,683,934 + -1.3
2,683,969 - -0.4
2,684,063 - -0.7
2,684,223 + QEN71_RS12040 0.22 -0.4
2,684,224 - QEN71_RS12040 0.22 -1.0
2,684,224 - QEN71_RS12040 0.22 +0.5
2,684,259 + QEN71_RS12040 0.26 -0.3
2,684,294 + QEN71_RS12040 0.30 -1.0
2,684,430 + QEN71_RS12040 0.46 -0.0
2,684,480 + QEN71_RS12040 0.52 +0.3
2,684,481 - QEN71_RS12040 0.52 +1.6
2,684,481 - QEN71_RS12040 0.52 -1.4
2,684,481 - QEN71_RS12040 0.52 -0.8
2,684,727 + QEN71_RS12040 0.80 +0.6
2,684,727 + QEN71_RS12040 0.80 +1.6
2,684,810 + QEN71_RS12040 0.90 -1.6
2,684,810 + QEN71_RS12040 0.90 +0.5
2,684,811 - -0.6
2,684,935 - +0.5
2,685,031 - QEN71_RS12045 0.30 +0.1
2,685,075 + QEN71_RS12045 0.41 -2.1
2,685,338 + -0.3
2,685,339 - -0.2
2,685,592 - QEN71_RS12050 0.32 +0.8
2,685,911 - QEN71_RS12050 0.72 +0.6
2,686,084 - +0.0
2,686,099 + -0.3
2,686,100 - -0.5
2,686,163 + +0.1
2,686,164 - +0.9
2,686,307 + QEN71_RS12055 0.20 +0.3
2,686,307 + QEN71_RS12055 0.20 +1.2
2,686,307 + QEN71_RS12055 0.20 +1.1

Or see this region's nucleotide sequence