Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11870

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11865 and QEN71_RS11870 are separated by 248 nucleotidesQEN71_RS11870 and QEN71_RS11875 are separated by 560 nucleotides QEN71_RS11865: QEN71_RS11865 - ABC transporter substrate-binding protein, at 2,641,502 to 2,642,503 _RS11865 QEN71_RS11870: QEN71_RS11870 - alkanesulfonate monooxygenase, at 2,642,752 to 2,642,937 _RS11870 QEN71_RS11875: QEN71_RS11875 - Na/Pi symporter, at 2,643,498 to 2,645,402 _RS11875 Position (kb) 2642 2643Strain fitness (log2 ratio) -2 -1 0 1 2at 2641.890 kb on + strand, within QEN71_RS11865at 2641.893 kb on + strand, within QEN71_RS11865at 2642.019 kb on - strand, within QEN71_RS11865at 2642.445 kb on - strandat 2642.445 kb on - strandat 2642.477 kb on + strandat 2642.503 kb on + strandat 2642.503 kb on + strandat 2642.534 kb on + strandat 2642.534 kb on + strandat 2642.535 kb on - strandat 2642.571 kb on + strandat 2642.573 kb on + strandat 2642.574 kb on - strandat 2642.574 kb on - strandat 2642.656 kb on + strandat 2642.656 kb on + strandat 2642.766 kb on + strandat 2642.767 kb on - strandat 2642.846 kb on + strand, within QEN71_RS11870at 2642.846 kb on + strand, within QEN71_RS11870at 2642.847 kb on - strand, within QEN71_RS11870at 2643.183 kb on + strandat 2643.384 kb on + strandat 2643.384 kb on + strandat 2643.384 kb on + strandat 2643.384 kb on + strandat 2643.803 kb on - strand, within QEN71_RS11875at 2643.817 kb on + strand, within QEN71_RS11875at 2643.817 kb on + strand, within QEN71_RS11875at 2643.818 kb on - strand, within QEN71_RS11875at 2643.818 kb on - strand, within QEN71_RS11875at 2643.818 kb on - strand, within QEN71_RS11875at 2643.818 kb on - strand, within QEN71_RS11875at 2643.818 kb on - strand, within QEN71_RS11875at 2643.841 kb on + strand, within QEN71_RS11875at 2643.841 kb on + strand, within QEN71_RS11875at 2643.842 kb on - strand, within QEN71_RS11875at 2643.881 kb on - strand, within QEN71_RS11875at 2643.895 kb on + strand, within QEN71_RS11875at 2643.895 kb on + strand, within QEN71_RS11875

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,641,890 + QEN71_RS11865 0.39 -0.4
2,641,893 + QEN71_RS11865 0.39 +0.1
2,642,019 - QEN71_RS11865 0.52 +0.7
2,642,445 - +1.0
2,642,445 - -1.9
2,642,477 + +0.1
2,642,503 + -1.5
2,642,503 + -1.8
2,642,534 + -0.4
2,642,534 + -0.3
2,642,535 - +0.2
2,642,571 + -1.8
2,642,573 + +1.1
2,642,574 - -2.0
2,642,574 - -0.2
2,642,656 + -1.0
2,642,656 + +0.3
2,642,766 + -1.8
2,642,767 - +1.0
2,642,846 + QEN71_RS11870 0.51 -2.2
2,642,846 + QEN71_RS11870 0.51 -1.4
2,642,847 - QEN71_RS11870 0.51 +0.3
2,643,183 + +0.5
2,643,384 + -0.3
2,643,384 + +1.1
2,643,384 + -1.4
2,643,384 + -0.3
2,643,803 - QEN71_RS11875 0.16 -0.5
2,643,817 + QEN71_RS11875 0.17 +0.0
2,643,817 + QEN71_RS11875 0.17 -0.2
2,643,818 - QEN71_RS11875 0.17 -0.3
2,643,818 - QEN71_RS11875 0.17 -0.5
2,643,818 - QEN71_RS11875 0.17 -0.3
2,643,818 - QEN71_RS11875 0.17 -1.5
2,643,818 - QEN71_RS11875 0.17 -0.6
2,643,841 + QEN71_RS11875 0.18 -0.8
2,643,841 + QEN71_RS11875 0.18 -0.5
2,643,842 - QEN71_RS11875 0.18 +2.0
2,643,881 - QEN71_RS11875 0.20 -0.4
2,643,895 + QEN71_RS11875 0.21 -0.1
2,643,895 + QEN71_RS11875 0.21 -1.0

Or see this region's nucleotide sequence