Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11760

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11755 and QEN71_RS11760 are separated by 567 nucleotidesQEN71_RS11760 and QEN71_RS11765 are separated by 88 nucleotidesQEN71_RS11765 and QEN71_RS11770 are separated by 68 nucleotides QEN71_RS11755: QEN71_RS11755 - type II asparaginase, at 2,618,250 to 2,619,350 _RS11755 QEN71_RS11760: QEN71_RS11760 - tautomerase family protein, at 2,619,918 to 2,620,310 _RS11760 QEN71_RS11765: QEN71_RS11765 - hexameric tyrosine-coordinated heme protein, at 2,620,399 to 2,620,635 _RS11765 QEN71_RS11770: QEN71_RS11770 - catalase family peroxidase, at 2,620,704 to 2,621,705 _RS11770 Position (kb) 2619 2620 2621Strain fitness (log2 ratio) -2 -1 0 1at 2618.926 kb on + strand, within QEN71_RS11755at 2618.946 kb on - strand, within QEN71_RS11755at 2619.281 kb on + strandat 2619.281 kb on + strandat 2619.281 kb on + strandat 2619.282 kb on - strandat 2619.282 kb on - strandat 2619.339 kb on + strandat 2619.339 kb on + strandat 2619.339 kb on + strandat 2619.339 kb on + strandat 2619.339 kb on + strandat 2619.340 kb on - strandat 2619.340 kb on - strandat 2619.340 kb on - strandat 2619.475 kb on - strandat 2619.528 kb on + strandat 2619.545 kb on - strandat 2619.678 kb on + strandat 2619.679 kb on - strandat 2619.789 kb on - strandat 2619.818 kb on - strandat 2620.058 kb on - strand, within QEN71_RS11760at 2620.133 kb on - strand, within QEN71_RS11760at 2620.493 kb on + strand, within QEN71_RS11765at 2620.493 kb on + strand, within QEN71_RS11765at 2620.493 kb on + strand, within QEN71_RS11765at 2620.495 kb on + strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.496 kb on - strand, within QEN71_RS11765at 2620.705 kb on + strandat 2621.002 kb on + strand, within QEN71_RS11770at 2621.002 kb on + strand, within QEN71_RS11770at 2621.003 kb on - strand, within QEN71_RS11770at 2621.003 kb on - strand, within QEN71_RS11770at 2621.041 kb on + strand, within QEN71_RS11770at 2621.041 kb on + strand, within QEN71_RS11770at 2621.041 kb on + strand, within QEN71_RS11770at 2621.042 kb on - strand, within QEN71_RS11770at 2621.080 kb on + strand, within QEN71_RS11770at 2621.146 kb on + strand, within QEN71_RS11770at 2621.147 kb on - strand, within QEN71_RS11770at 2621.147 kb on - strand, within QEN71_RS11770at 2621.147 kb on - strand, within QEN71_RS11770at 2621.209 kb on + strand, within QEN71_RS11770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,618,926 + QEN71_RS11755 0.61 -0.8
2,618,946 - QEN71_RS11755 0.63 -0.0
2,619,281 + +0.4
2,619,281 + +0.6
2,619,281 + -1.2
2,619,282 - +0.5
2,619,282 - -0.1
2,619,339 + +0.9
2,619,339 + +1.0
2,619,339 + -0.8
2,619,339 + -1.2
2,619,339 + -0.6
2,619,340 - +0.8
2,619,340 - +0.5
2,619,340 - -1.7
2,619,475 - +0.7
2,619,528 + -0.4
2,619,545 - +1.2
2,619,678 + -0.8
2,619,679 - +0.0
2,619,789 - +0.8
2,619,818 - -0.1
2,620,058 - QEN71_RS11760 0.36 -2.3
2,620,133 - QEN71_RS11760 0.55 -0.4
2,620,493 + QEN71_RS11765 0.40 -0.1
2,620,493 + QEN71_RS11765 0.40 -1.5
2,620,493 + QEN71_RS11765 0.40 +0.7
2,620,495 + QEN71_RS11765 0.41 -1.1
2,620,496 - QEN71_RS11765 0.41 +0.2
2,620,496 - QEN71_RS11765 0.41 -0.3
2,620,496 - QEN71_RS11765 0.41 +0.2
2,620,496 - QEN71_RS11765 0.41 +1.0
2,620,496 - QEN71_RS11765 0.41 -0.2
2,620,705 + -0.1
2,621,002 + QEN71_RS11770 0.30 -0.2
2,621,002 + QEN71_RS11770 0.30 -0.1
2,621,003 - QEN71_RS11770 0.30 -0.9
2,621,003 - QEN71_RS11770 0.30 +0.6
2,621,041 + QEN71_RS11770 0.34 +0.2
2,621,041 + QEN71_RS11770 0.34 -0.7
2,621,041 + QEN71_RS11770 0.34 -0.8
2,621,042 - QEN71_RS11770 0.34 -1.9
2,621,080 + QEN71_RS11770 0.38 -0.5
2,621,146 + QEN71_RS11770 0.44 -1.4
2,621,147 - QEN71_RS11770 0.44 +0.6
2,621,147 - QEN71_RS11770 0.44 -0.3
2,621,147 - QEN71_RS11770 0.44 +1.1
2,621,209 + QEN71_RS11770 0.50 -0.3

Or see this region's nucleotide sequence