Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11075

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11070 and QEN71_RS11075 are separated by 515 nucleotidesQEN71_RS11075 and QEN71_RS11080 are separated by 271 nucleotidesQEN71_RS11080 and QEN71_RS11085 are separated by 163 nucleotides QEN71_RS11070: QEN71_RS11070 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,461,749 to 2,463,038 _RS11070 QEN71_RS11075: QEN71_RS11075 - hypothetical protein, at 2,463,554 to 2,463,922 _RS11075 QEN71_RS11080: QEN71_RS11080 - hypothetical protein, at 2,464,194 to 2,464,550 _RS11080 QEN71_RS11085: QEN71_RS11085 - hypothetical protein, at 2,464,714 to 2,465,058 _RS11085 Position (kb) 2463 2464Strain fitness (log2 ratio) -2 -1 0 1at 2463.003 kb on + strandat 2463.003 kb on + strandat 2463.004 kb on - strandat 2463.207 kb on - strandat 2463.227 kb on + strandat 2463.227 kb on + strandat 2463.246 kb on + strandat 2463.272 kb on + strandat 2463.272 kb on + strandat 2463.272 kb on + strandat 2463.273 kb on - strandat 2463.273 kb on - strandat 2463.289 kb on + strandat 2463.289 kb on + strandat 2463.289 kb on + strandat 2463.289 kb on + strandat 2463.290 kb on - strandat 2463.295 kb on + strandat 2463.304 kb on + strandat 2463.305 kb on - strandat 2463.454 kb on + strandat 2463.454 kb on + strandat 2463.457 kb on - strandat 2463.503 kb on + strandat 2463.503 kb on + strandat 2463.526 kb on + strandat 2463.527 kb on - strandat 2463.547 kb on + strandat 2463.548 kb on - strandat 2463.548 kb on - strandat 2463.548 kb on - strandat 2463.556 kb on - strandat 2463.817 kb on - strand, within QEN71_RS11075at 2463.817 kb on - strand, within QEN71_RS11075at 2463.940 kb on + strandat 2463.940 kb on + strandat 2463.940 kb on + strandat 2463.975 kb on + strandat 2463.976 kb on - strandat 2463.987 kb on + strandat 2463.987 kb on + strandat 2464.023 kb on + strandat 2464.023 kb on + strandat 2464.024 kb on - strandat 2464.024 kb on - strandat 2464.024 kb on - strandat 2464.024 kb on - strandat 2464.024 kb on - strandat 2464.024 kb on - strandat 2464.024 kb on - strandat 2464.025 kb on + strandat 2464.025 kb on + strandat 2464.025 kb on + strandat 2464.025 kb on + strandat 2464.026 kb on - strandat 2464.026 kb on - strandat 2464.084 kb on + strandat 2464.084 kb on + strandat 2464.085 kb on - strandat 2464.385 kb on + strand, within QEN71_RS11080at 2464.386 kb on - strand, within QEN71_RS11080at 2464.386 kb on - strand, within QEN71_RS11080at 2464.623 kb on + strandat 2464.623 kb on + strandat 2464.623 kb on + strandat 2464.624 kb on - strandat 2464.624 kb on - strandat 2464.624 kb on - strandat 2464.651 kb on + strandat 2464.651 kb on + strandat 2464.651 kb on + strandat 2464.652 kb on - strandat 2464.652 kb on - strandat 2464.652 kb on - strandat 2464.652 kb on - strandat 2464.652 kb on - strandat 2464.652 kb on - strandat 2464.652 kb on - strandat 2464.681 kb on + strandat 2464.681 kb on + strandat 2464.681 kb on + strandat 2464.681 kb on + strandat 2464.682 kb on - strandat 2464.682 kb on - strandat 2464.702 kb on + strandat 2464.703 kb on - strandat 2464.703 kb on - strandat 2464.895 kb on + strand, within QEN71_RS11085at 2464.895 kb on + strand, within QEN71_RS11085at 2464.895 kb on + strand, within QEN71_RS11085at 2464.895 kb on + strand, within QEN71_RS11085at 2464.895 kb on + strand, within QEN71_RS11085at 2464.895 kb on + strand, within QEN71_RS11085at 2464.895 kb on + strand, within QEN71_RS11085at 2464.896 kb on - strand, within QEN71_RS11085at 2464.896 kb on - strand, within QEN71_RS11085at 2464.896 kb on - strand, within QEN71_RS11085

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,463,003 + +0.2
2,463,003 + -0.8
2,463,004 - +0.8
2,463,207 - -0.5
2,463,227 + +0.1
2,463,227 + -0.8
2,463,246 + -0.9
2,463,272 + -0.6
2,463,272 + -0.2
2,463,272 + +0.8
2,463,273 - -0.8
2,463,273 - -0.3
2,463,289 + +0.2
2,463,289 + -0.1
2,463,289 + -1.0
2,463,289 + -1.3
2,463,290 - -1.2
2,463,295 + +0.4
2,463,304 + -0.4
2,463,305 - -0.6
2,463,454 + -0.9
2,463,454 + +1.1
2,463,457 - -1.0
2,463,503 + -2.6
2,463,503 + -0.1
2,463,526 + -1.0
2,463,527 - -1.4
2,463,547 + +0.2
2,463,548 - -0.5
2,463,548 - -0.5
2,463,548 - +0.8
2,463,556 - -0.4
2,463,817 - QEN71_RS11075 0.71 -0.3
2,463,817 - QEN71_RS11075 0.71 -2.7
2,463,940 + -0.6
2,463,940 + -1.0
2,463,940 + -0.2
2,463,975 + +1.1
2,463,976 - -0.1
2,463,987 + +0.3
2,463,987 + +0.0
2,464,023 + +0.8
2,464,023 + +0.2
2,464,024 - +0.9
2,464,024 - +1.7
2,464,024 - +0.1
2,464,024 - -0.5
2,464,024 - -0.3
2,464,024 - -0.4
2,464,024 - +0.3
2,464,025 + +0.9
2,464,025 + -0.6
2,464,025 + -0.1
2,464,025 + -1.1
2,464,026 - -1.4
2,464,026 - -0.3
2,464,084 + -1.3
2,464,084 + -0.3
2,464,085 - -0.2
2,464,385 + QEN71_RS11080 0.54 +0.3
2,464,386 - QEN71_RS11080 0.54 -0.2
2,464,386 - QEN71_RS11080 0.54 +1.0
2,464,623 + -0.2
2,464,623 + +0.0
2,464,623 + -1.2
2,464,624 - -0.7
2,464,624 - -1.7
2,464,624 - +0.6
2,464,651 + -0.1
2,464,651 + -0.1
2,464,651 + -0.3
2,464,652 - -2.5
2,464,652 - -0.6
2,464,652 - -0.3
2,464,652 - -0.5
2,464,652 - -0.1
2,464,652 - -0.8
2,464,652 - -0.6
2,464,681 + -0.8
2,464,681 + -0.1
2,464,681 + -0.7
2,464,681 + -1.1
2,464,682 - -1.3
2,464,682 - -0.4
2,464,702 + -0.9
2,464,703 - -0.1
2,464,703 - -2.0
2,464,895 + QEN71_RS11085 0.52 -2.4
2,464,895 + QEN71_RS11085 0.52 +0.2
2,464,895 + QEN71_RS11085 0.52 -0.1
2,464,895 + QEN71_RS11085 0.52 -0.7
2,464,895 + QEN71_RS11085 0.52 +0.0
2,464,895 + QEN71_RS11085 0.52 -1.3
2,464,895 + QEN71_RS11085 0.52 -0.1
2,464,896 - QEN71_RS11085 0.53 -1.4
2,464,896 - QEN71_RS11085 0.53 -0.6
2,464,896 - QEN71_RS11085 0.53 -0.6

Or see this region's nucleotide sequence