Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11065

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11060 and QEN71_RS11065 are separated by 84 nucleotidesQEN71_RS11065 and QEN71_RS11070 overlap by 4 nucleotides QEN71_RS11060: QEN71_RS11060 - glycine betaine ABC transporter substrate-binding protein, at 2,459,902 to 2,460,783 _RS11060 QEN71_RS11065: QEN71_RS11065 - proline/glycine betaine ABC transporter permease, at 2,460,868 to 2,461,752 _RS11065 QEN71_RS11070: QEN71_RS11070 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,461,749 to 2,463,038 _RS11070 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -1 0 1at 2459.904 kb on - strandat 2459.969 kb on + strandat 2460.279 kb on - strand, within QEN71_RS11060at 2460.279 kb on - strand, within QEN71_RS11060at 2460.411 kb on + strand, within QEN71_RS11060at 2460.413 kb on + strand, within QEN71_RS11060at 2460.413 kb on + strand, within QEN71_RS11060at 2460.414 kb on - strand, within QEN71_RS11060at 2460.449 kb on + strand, within QEN71_RS11060at 2460.449 kb on + strand, within QEN71_RS11060at 2460.449 kb on + strand, within QEN71_RS11060at 2460.450 kb on - strand, within QEN71_RS11060at 2460.450 kb on - strand, within QEN71_RS11060at 2460.483 kb on - strand, within QEN71_RS11060at 2460.483 kb on - strand, within QEN71_RS11060at 2460.494 kb on + strand, within QEN71_RS11060at 2460.829 kb on - strandat 2460.829 kb on - strandat 2460.829 kb on - strandat 2460.829 kb on - strandat 2461.050 kb on - strand, within QEN71_RS11065at 2461.442 kb on - strand, within QEN71_RS11065at 2461.515 kb on - strand, within QEN71_RS11065at 2461.515 kb on - strand, within QEN71_RS11065at 2461.515 kb on - strand, within QEN71_RS11065at 2462.045 kb on - strand, within QEN71_RS11070at 2462.161 kb on + strand, within QEN71_RS11070at 2462.161 kb on + strand, within QEN71_RS11070at 2462.162 kb on - strand, within QEN71_RS11070

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,459,904 - +0.8
2,459,969 + +1.3
2,460,279 - QEN71_RS11060 0.43 -0.6
2,460,279 - QEN71_RS11060 0.43 +0.4
2,460,411 + QEN71_RS11060 0.58 +0.6
2,460,413 + QEN71_RS11060 0.58 -1.0
2,460,413 + QEN71_RS11060 0.58 -0.2
2,460,414 - QEN71_RS11060 0.58 +0.9
2,460,449 + QEN71_RS11060 0.62 +0.1
2,460,449 + QEN71_RS11060 0.62 +1.6
2,460,449 + QEN71_RS11060 0.62 +0.6
2,460,450 - QEN71_RS11060 0.62 -0.5
2,460,450 - QEN71_RS11060 0.62 +0.0
2,460,483 - QEN71_RS11060 0.66 -0.4
2,460,483 - QEN71_RS11060 0.66 +0.5
2,460,494 + QEN71_RS11060 0.67 +0.8
2,460,829 - +0.1
2,460,829 - -0.0
2,460,829 - -0.4
2,460,829 - -0.8
2,461,050 - QEN71_RS11065 0.21 -0.9
2,461,442 - QEN71_RS11065 0.65 -1.5
2,461,515 - QEN71_RS11065 0.73 -0.9
2,461,515 - QEN71_RS11065 0.73 -0.5
2,461,515 - QEN71_RS11065 0.73 -0.6
2,462,045 - QEN71_RS11070 0.23 +0.1
2,462,161 + QEN71_RS11070 0.32 -0.8
2,462,161 + QEN71_RS11070 0.32 -0.3
2,462,162 - QEN71_RS11070 0.32 -0.7

Or see this region's nucleotide sequence