Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10685

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10675 and QEN71_RS10680 are separated by 109 nucleotidesQEN71_RS10680 and QEN71_RS10685 are separated by 49 nucleotides QEN71_RS10675: QEN71_RS10675 - prepilin peptidase, at 2,367,277 to 2,367,816 _RS10675 QEN71_RS10680: QEN71_RS10680 - Flp family type IVb pilin, at 2,367,926 to 2,368,108 _RS10680 QEN71_RS10685: QEN71_RS10685 - Flp family type IVb pilin, at 2,368,158 to 2,368,340 _RS10685 Position (kb) 2368 2369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2367.330 kb on - strandat 2367.406 kb on + strand, within QEN71_RS10675at 2367.407 kb on - strand, within QEN71_RS10675at 2367.599 kb on + strand, within QEN71_RS10675at 2367.752 kb on + strand, within QEN71_RS10675at 2367.753 kb on - strand, within QEN71_RS10675at 2367.753 kb on - strand, within QEN71_RS10675at 2367.753 kb on - strand, within QEN71_RS10675at 2367.753 kb on - strand, within QEN71_RS10675at 2367.917 kb on - strandat 2367.967 kb on - strand, within QEN71_RS10680at 2368.050 kb on + strand, within QEN71_RS10680at 2368.051 kb on - strand, within QEN71_RS10680at 2368.198 kb on + strand, within QEN71_RS10685at 2368.198 kb on + strand, within QEN71_RS10685at 2368.282 kb on + strand, within QEN71_RS10685at 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.425 kb on + strandat 2368.426 kb on - strandat 2368.426 kb on - strandat 2368.426 kb on - strandat 2368.474 kb on + strandat 2368.474 kb on + strandat 2368.474 kb on + strandat 2368.475 kb on - strandat 2368.475 kb on - strandat 2368.481 kb on + strandat 2368.656 kb on + strandat 2368.656 kb on + strandat 2368.657 kb on - strandat 2369.087 kb on + strandat 2369.087 kb on + strandat 2369.093 kb on + strandat 2369.095 kb on + strandat 2369.095 kb on + strandat 2369.095 kb on + strandat 2369.095 kb on + strandat 2369.095 kb on + strandat 2369.096 kb on - strandat 2369.096 kb on - strandat 2369.096 kb on - strandat 2369.096 kb on - strandat 2369.106 kb on + strandat 2369.107 kb on - strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.118 kb on + strandat 2369.119 kb on - strandat 2369.119 kb on - strandat 2369.119 kb on - strandat 2369.119 kb on - strandat 2369.119 kb on - strandat 2369.152 kb on + strandat 2369.152 kb on + strandat 2369.152 kb on + strandat 2369.153 kb on - strandat 2369.153 kb on - strandat 2369.153 kb on - strandat 2369.153 kb on - strandat 2369.176 kb on + strandat 2369.177 kb on - strandat 2369.223 kb on + strandat 2369.224 kb on - strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.268 kb on + strandat 2369.269 kb on - strandat 2369.269 kb on - strandat 2369.269 kb on - strandat 2369.269 kb on - strandat 2369.287 kb on + strandat 2369.290 kb on + strandat 2369.290 kb on + strandat 2369.290 kb on + strandat 2369.290 kb on + strandat 2369.290 kb on + strandat 2369.290 kb on + strandat 2369.291 kb on - strandat 2369.291 kb on - strandat 2369.291 kb on - strandat 2369.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,367,330 - +0.4
2,367,406 + QEN71_RS10675 0.24 -2.0
2,367,407 - QEN71_RS10675 0.24 -1.2
2,367,599 + QEN71_RS10675 0.60 -0.6
2,367,752 + QEN71_RS10675 0.88 +1.8
2,367,753 - QEN71_RS10675 0.88 +0.2
2,367,753 - QEN71_RS10675 0.88 +0.2
2,367,753 - QEN71_RS10675 0.88 -0.1
2,367,753 - QEN71_RS10675 0.88 +2.0
2,367,917 - -1.4
2,367,967 - QEN71_RS10680 0.22 +0.3
2,368,050 + QEN71_RS10680 0.68 +0.4
2,368,051 - QEN71_RS10680 0.68 -0.8
2,368,198 + QEN71_RS10685 0.22 -0.5
2,368,198 + QEN71_RS10685 0.22 -2.5
2,368,282 + QEN71_RS10685 0.68 -1.1
2,368,425 + -0.4
2,368,425 + +0.4
2,368,425 + -0.4
2,368,425 + -0.1
2,368,425 + +1.0
2,368,425 + +0.8
2,368,425 + -0.6
2,368,425 + -1.0
2,368,425 + -0.3
2,368,426 - -1.0
2,368,426 - -0.0
2,368,426 - +0.2
2,368,474 + -0.2
2,368,474 + -0.2
2,368,474 + -0.9
2,368,475 - -3.0
2,368,475 - -0.5
2,368,481 + -0.5
2,368,656 + -0.1
2,368,656 + -0.4
2,368,657 - +0.2
2,369,087 + -2.6
2,369,087 + -1.9
2,369,093 + -1.5
2,369,095 + +0.8
2,369,095 + +0.2
2,369,095 + -0.1
2,369,095 + -0.3
2,369,095 + -0.1
2,369,096 - -0.2
2,369,096 - -1.4
2,369,096 - -1.0
2,369,096 - +1.2
2,369,106 + -1.9
2,369,107 - -0.8
2,369,118 + -0.2
2,369,118 + -0.1
2,369,118 + -0.1
2,369,118 + +1.3
2,369,118 + +0.8
2,369,118 + +0.2
2,369,118 + -0.0
2,369,118 + +0.3
2,369,119 - +0.5
2,369,119 - -0.8
2,369,119 - -0.1
2,369,119 - -0.7
2,369,119 - -0.1
2,369,152 + +1.1
2,369,152 + -1.2
2,369,152 + +1.6
2,369,153 - +0.8
2,369,153 - -2.1
2,369,153 - +0.1
2,369,153 - -0.5
2,369,176 + +1.1
2,369,177 - -1.6
2,369,223 + +0.2
2,369,224 - -0.2
2,369,268 + +0.1
2,369,268 + +0.2
2,369,268 + -0.2
2,369,268 + +0.4
2,369,268 + +0.1
2,369,268 + -1.8
2,369,268 + -0.6
2,369,268 + +1.0
2,369,268 + -0.3
2,369,268 + -0.6
2,369,269 - -1.2
2,369,269 - -0.5
2,369,269 - +0.2
2,369,269 - +0.8
2,369,287 + +1.6
2,369,290 + +0.1
2,369,290 + -1.1
2,369,290 + -0.0
2,369,290 + +0.9
2,369,290 + -0.9
2,369,290 + -1.4
2,369,291 - -2.5
2,369,291 - +0.6
2,369,291 - +0.4
2,369,291 - -1.0

Or see this region's nucleotide sequence