Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10100

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10095 and QEN71_RS10100 are separated by 84 nucleotidesQEN71_RS10100 and QEN71_RS10105 are separated by 27 nucleotides QEN71_RS10095: QEN71_RS10095 - MFS transporter, at 2,249,330 to 2,250,655 _RS10095 QEN71_RS10100: QEN71_RS10100 - ribonuclease activity regulator RraA, at 2,250,740 to 2,251,486 _RS10100 QEN71_RS10105: QEN71_RS10105 - L-arabinonate dehydratase, at 2,251,514 to 2,253,262 _RS10105 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2249.813 kb on - strand, within QEN71_RS10095at 2249.813 kb on - strand, within QEN71_RS10095at 2249.813 kb on - strand, within QEN71_RS10095at 2249.853 kb on + strand, within QEN71_RS10095at 2249.853 kb on + strand, within QEN71_RS10095at 2249.854 kb on - strand, within QEN71_RS10095at 2249.854 kb on - strand, within QEN71_RS10095at 2249.857 kb on + strand, within QEN71_RS10095at 2249.857 kb on + strand, within QEN71_RS10095at 2249.858 kb on - strand, within QEN71_RS10095at 2249.858 kb on - strand, within QEN71_RS10095at 2249.889 kb on + strand, within QEN71_RS10095at 2249.889 kb on + strand, within QEN71_RS10095at 2249.889 kb on + strand, within QEN71_RS10095at 2249.889 kb on + strand, within QEN71_RS10095at 2249.889 kb on + strand, within QEN71_RS10095at 2249.890 kb on - strand, within QEN71_RS10095at 2249.890 kb on - strand, within QEN71_RS10095at 2249.890 kb on - strand, within QEN71_RS10095at 2249.892 kb on + strand, within QEN71_RS10095at 2249.893 kb on - strand, within QEN71_RS10095at 2250.213 kb on + strand, within QEN71_RS10095at 2250.213 kb on + strand, within QEN71_RS10095at 2250.262 kb on - strand, within QEN71_RS10095at 2250.264 kb on + strand, within QEN71_RS10095at 2250.264 kb on + strand, within QEN71_RS10095at 2250.264 kb on + strand, within QEN71_RS10095at 2250.264 kb on + strand, within QEN71_RS10095at 2250.265 kb on - strand, within QEN71_RS10095at 2250.265 kb on - strand, within QEN71_RS10095at 2250.265 kb on - strand, within QEN71_RS10095at 2250.321 kb on + strand, within QEN71_RS10095at 2250.321 kb on + strand, within QEN71_RS10095at 2250.321 kb on + strand, within QEN71_RS10095at 2250.321 kb on + strand, within QEN71_RS10095at 2250.321 kb on + strand, within QEN71_RS10095at 2250.322 kb on - strand, within QEN71_RS10095at 2250.322 kb on - strand, within QEN71_RS10095at 2250.322 kb on - strand, within QEN71_RS10095at 2250.322 kb on - strand, within QEN71_RS10095at 2250.412 kb on - strand, within QEN71_RS10095at 2250.412 kb on - strand, within QEN71_RS10095at 2250.412 kb on - strand, within QEN71_RS10095at 2250.412 kb on - strand, within QEN71_RS10095at 2250.412 kb on - strand, within QEN71_RS10095at 2250.487 kb on - strand, within QEN71_RS10095at 2250.558 kb on + strandat 2250.559 kb on - strandat 2250.570 kb on + strandat 2250.570 kb on + strandat 2250.571 kb on - strandat 2250.741 kb on + strandat 2250.741 kb on + strandat 2250.742 kb on - strandat 2250.742 kb on - strandat 2250.768 kb on + strandat 2250.769 kb on - strandat 2250.769 kb on - strandat 2250.769 kb on - strandat 2250.798 kb on + strandat 2250.799 kb on - strandat 2251.286 kb on - strand, within QEN71_RS10100at 2251.506 kb on + strandat 2251.507 kb on - strandat 2251.507 kb on - strandat 2251.507 kb on - strandat 2251.819 kb on - strand, within QEN71_RS10105at 2252.016 kb on + strand, within QEN71_RS10105at 2252.016 kb on + strand, within QEN71_RS10105at 2252.016 kb on + strand, within QEN71_RS10105at 2252.017 kb on - strand, within QEN71_RS10105at 2252.289 kb on + strand, within QEN71_RS10105at 2252.290 kb on - strand, within QEN71_RS10105at 2252.290 kb on - strand, within QEN71_RS10105at 2252.292 kb on + strand, within QEN71_RS10105at 2252.292 kb on + strand, within QEN71_RS10105at 2252.292 kb on + strand, within QEN71_RS10105at 2252.292 kb on + strand, within QEN71_RS10105at 2252.292 kb on + strand, within QEN71_RS10105at 2252.292 kb on + strand, within QEN71_RS10105at 2252.293 kb on - strand, within QEN71_RS10105at 2252.293 kb on - strand, within QEN71_RS10105at 2252.293 kb on - strand, within QEN71_RS10105at 2252.293 kb on - strand, within QEN71_RS10105at 2252.293 kb on - strand, within QEN71_RS10105at 2252.310 kb on + strand, within QEN71_RS10105at 2252.311 kb on - strand, within QEN71_RS10105

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,249,813 - QEN71_RS10095 0.36 -0.8
2,249,813 - QEN71_RS10095 0.36 +0.3
2,249,813 - QEN71_RS10095 0.36 +1.2
2,249,853 + QEN71_RS10095 0.39 +0.2
2,249,853 + QEN71_RS10095 0.39 +0.7
2,249,854 - QEN71_RS10095 0.40 +0.8
2,249,854 - QEN71_RS10095 0.40 -1.1
2,249,857 + QEN71_RS10095 0.40 -0.7
2,249,857 + QEN71_RS10095 0.40 -0.0
2,249,858 - QEN71_RS10095 0.40 +0.2
2,249,858 - QEN71_RS10095 0.40 -0.1
2,249,889 + QEN71_RS10095 0.42 -1.4
2,249,889 + QEN71_RS10095 0.42 +0.1
2,249,889 + QEN71_RS10095 0.42 -0.7
2,249,889 + QEN71_RS10095 0.42 -1.0
2,249,889 + QEN71_RS10095 0.42 -2.9
2,249,890 - QEN71_RS10095 0.42 -0.0
2,249,890 - QEN71_RS10095 0.42 -0.9
2,249,890 - QEN71_RS10095 0.42 +0.4
2,249,892 + QEN71_RS10095 0.42 +0.2
2,249,893 - QEN71_RS10095 0.42 -1.5
2,250,213 + QEN71_RS10095 0.67 +0.3
2,250,213 + QEN71_RS10095 0.67 -0.8
2,250,262 - QEN71_RS10095 0.70 -1.5
2,250,264 + QEN71_RS10095 0.70 +0.0
2,250,264 + QEN71_RS10095 0.70 -0.2
2,250,264 + QEN71_RS10095 0.70 -1.1
2,250,264 + QEN71_RS10095 0.70 -0.4
2,250,265 - QEN71_RS10095 0.71 -0.7
2,250,265 - QEN71_RS10095 0.71 +0.3
2,250,265 - QEN71_RS10095 0.71 +0.1
2,250,321 + QEN71_RS10095 0.75 -0.3
2,250,321 + QEN71_RS10095 0.75 +0.4
2,250,321 + QEN71_RS10095 0.75 -1.1
2,250,321 + QEN71_RS10095 0.75 +1.0
2,250,321 + QEN71_RS10095 0.75 -0.9
2,250,322 - QEN71_RS10095 0.75 -0.3
2,250,322 - QEN71_RS10095 0.75 -0.4
2,250,322 - QEN71_RS10095 0.75 -0.8
2,250,322 - QEN71_RS10095 0.75 +0.6
2,250,412 - QEN71_RS10095 0.82 +0.1
2,250,412 - QEN71_RS10095 0.82 +0.8
2,250,412 - QEN71_RS10095 0.82 -0.9
2,250,412 - QEN71_RS10095 0.82 -0.4
2,250,412 - QEN71_RS10095 0.82 +1.4
2,250,487 - QEN71_RS10095 0.87 +0.1
2,250,558 + -0.3
2,250,559 - -0.1
2,250,570 + -0.5
2,250,570 + -0.5
2,250,571 - -0.0
2,250,741 + +0.8
2,250,741 + +1.1
2,250,742 - -0.5
2,250,742 - +0.5
2,250,768 + -1.7
2,250,769 - +0.0
2,250,769 - +0.6
2,250,769 - -0.6
2,250,798 + -0.8
2,250,799 - +0.2
2,251,286 - QEN71_RS10100 0.73 -1.4
2,251,506 + +0.1
2,251,507 - -2.6
2,251,507 - +1.8
2,251,507 - -0.8
2,251,819 - QEN71_RS10105 0.17 -0.6
2,252,016 + QEN71_RS10105 0.29 +1.9
2,252,016 + QEN71_RS10105 0.29 +0.7
2,252,016 + QEN71_RS10105 0.29 -1.1
2,252,017 - QEN71_RS10105 0.29 -0.4
2,252,289 + QEN71_RS10105 0.44 +0.4
2,252,290 - QEN71_RS10105 0.44 -0.1
2,252,290 - QEN71_RS10105 0.44 -0.5
2,252,292 + QEN71_RS10105 0.44 -0.9
2,252,292 + QEN71_RS10105 0.44 +0.8
2,252,292 + QEN71_RS10105 0.44 +0.6
2,252,292 + QEN71_RS10105 0.44 +1.6
2,252,292 + QEN71_RS10105 0.44 +0.1
2,252,292 + QEN71_RS10105 0.44 -0.9
2,252,293 - QEN71_RS10105 0.45 -0.9
2,252,293 - QEN71_RS10105 0.45 +0.2
2,252,293 - QEN71_RS10105 0.45 +0.5
2,252,293 - QEN71_RS10105 0.45 +0.8
2,252,293 - QEN71_RS10105 0.45 -0.8
2,252,310 + QEN71_RS10105 0.46 -0.0
2,252,311 - QEN71_RS10105 0.46 -0.4

Or see this region's nucleotide sequence