Experiment: LB_noSalt with Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS09540 and QEN71_RS09545 are separated by 282 nucleotides QEN71_RS09545 and QEN71_RS09550 overlap by 8 nucleotides QEN71_RS09550 and QEN71_RS09555 are separated by 26 nucleotides
QEN71_RS09540: QEN71_RS09540 - formaldehyde-activating enzyme, at 2,134,806 to 2,135,339
_RS09540
QEN71_RS09545: QEN71_RS09545 - Dyp-type peroxidase, at 2,135,622 to 2,136,689
_RS09545
QEN71_RS09550: QEN71_RS09550 - family 1 encapsulin nanocompartment shell protein, at 2,136,682 to 2,137,485
_RS09550
QEN71_RS09555: QEN71_RS09555 - TetR/AcrR family transcriptional regulator, at 2,137,512 to 2,138,093
_RS09555
Position (kb)
2135
2136
2137 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2134.811 kb on + strand at 2134.846 kb on + strand at 2134.846 kb on + strand at 2134.847 kb on - strand at 2135.217 kb on + strand, within QEN71_RS09540 at 2135.217 kb on + strand, within QEN71_RS09540 at 2135.218 kb on - strand, within QEN71_RS09540 at 2135.218 kb on - strand, within QEN71_RS09540 at 2135.218 kb on - strand, within QEN71_RS09540 at 2135.218 kb on - strand, within QEN71_RS09540 at 2135.229 kb on + strand, within QEN71_RS09540 at 2135.229 kb on + strand, within QEN71_RS09540 at 2135.229 kb on + strand, within QEN71_RS09540 at 2135.229 kb on + strand, within QEN71_RS09540 at 2135.230 kb on - strand, within QEN71_RS09540 at 2135.306 kb on + strand at 2135.306 kb on + strand at 2135.307 kb on - strand at 2135.337 kb on + strand at 2135.474 kb on + strand at 2135.474 kb on + strand at 2135.474 kb on + strand at 2135.475 kb on - strand at 2135.761 kb on + strand, within QEN71_RS09545 at 2135.761 kb on + strand, within QEN71_RS09545 at 2136.156 kb on + strand, within QEN71_RS09545 at 2136.156 kb on + strand, within QEN71_RS09545 at 2136.156 kb on + strand, within QEN71_RS09545 at 2136.157 kb on - strand, within QEN71_RS09545 at 2136.174 kb on + strand, within QEN71_RS09545 at 2136.175 kb on - strand, within QEN71_RS09545 at 2136.175 kb on - strand, within QEN71_RS09545 at 2136.175 kb on - strand, within QEN71_RS09545 at 2136.390 kb on + strand, within QEN71_RS09545 at 2136.390 kb on + strand, within QEN71_RS09545 at 2136.472 kb on - strand, within QEN71_RS09545 at 2136.472 kb on - strand, within QEN71_RS09545 at 2136.472 kb on - strand, within QEN71_RS09545 at 2136.472 kb on - strand, within QEN71_RS09545 at 2136.489 kb on + strand, within QEN71_RS09545 at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.620 kb on + strand at 2136.621 kb on - strand at 2136.681 kb on + strand at 2136.682 kb on - strand at 2137.018 kb on + strand, within QEN71_RS09550 at 2137.018 kb on + strand, within QEN71_RS09550 at 2137.186 kb on + strand, within QEN71_RS09550 at 2137.213 kb on + strand, within QEN71_RS09550 at 2137.213 kb on + strand, within QEN71_RS09550 at 2137.213 kb on + strand, within QEN71_RS09550 at 2137.214 kb on - strand, within QEN71_RS09550 at 2137.483 kb on + strand at 2137.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM remove 2,134,811 + +0.9 2,134,846 + +1.5 2,134,846 + +1.5 2,134,847 - +1.1 2,135,217 + QEN71_RS09540 0.77 +1.8 2,135,217 + QEN71_RS09540 0.77 +3.1 2,135,218 - QEN71_RS09540 0.77 +1.7 2,135,218 - QEN71_RS09540 0.77 +1.5 2,135,218 - QEN71_RS09540 0.77 -0.3 2,135,218 - QEN71_RS09540 0.77 +1.6 2,135,229 + QEN71_RS09540 0.79 +3.1 2,135,229 + QEN71_RS09540 0.79 +1.7 2,135,229 + QEN71_RS09540 0.79 +2.7 2,135,229 + QEN71_RS09540 0.79 +1.9 2,135,230 - QEN71_RS09540 0.79 +0.7 2,135,306 + +3.1 2,135,306 + +3.2 2,135,307 - +1.6 2,135,337 + +3.4 2,135,474 + +3.2 2,135,474 + +3.4 2,135,474 + +3.4 2,135,475 - +2.6 2,135,761 + QEN71_RS09545 0.13 -2.0 2,135,761 + QEN71_RS09545 0.13 -0.1 2,136,156 + QEN71_RS09545 0.50 -2.0 2,136,156 + QEN71_RS09545 0.50 -2.5 2,136,156 + QEN71_RS09545 0.50 -1.4 2,136,157 - QEN71_RS09545 0.50 -0.1 2,136,174 + QEN71_RS09545 0.52 -2.0 2,136,175 - QEN71_RS09545 0.52 -0.6 2,136,175 - QEN71_RS09545 0.52 -0.8 2,136,175 - QEN71_RS09545 0.52 +0.2 2,136,390 + QEN71_RS09545 0.72 -1.0 2,136,390 + QEN71_RS09545 0.72 -0.1 2,136,472 - QEN71_RS09545 0.80 -1.4 2,136,472 - QEN71_RS09545 0.80 +0.6 2,136,472 - QEN71_RS09545 0.80 +0.9 2,136,472 - QEN71_RS09545 0.80 -0.5 2,136,489 + QEN71_RS09545 0.81 -0.8 2,136,620 + -1.0 2,136,620 + -0.4 2,136,620 + -2.8 2,136,620 + -1.2 2,136,620 + -0.2 2,136,620 + -0.4 2,136,620 + -1.5 2,136,620 + -0.8 2,136,620 + -0.1 2,136,620 + -2.1 2,136,621 - +0.4 2,136,681 + +1.7 2,136,682 - +0.9 2,137,018 + QEN71_RS09550 0.42 -1.6 2,137,018 + QEN71_RS09550 0.42 -0.8 2,137,186 + QEN71_RS09550 0.63 -2.2 2,137,213 + QEN71_RS09550 0.66 -0.3 2,137,213 + QEN71_RS09550 0.66 -2.0 2,137,213 + QEN71_RS09550 0.66 +1.8 2,137,214 - QEN71_RS09550 0.66 +0.6 2,137,483 + +0.1 2,137,484 - -0.2
Or see this region's nucleotide sequence