Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09545

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09540 and QEN71_RS09545 are separated by 282 nucleotidesQEN71_RS09545 and QEN71_RS09550 overlap by 8 nucleotidesQEN71_RS09550 and QEN71_RS09555 are separated by 26 nucleotides QEN71_RS09540: QEN71_RS09540 - formaldehyde-activating enzyme, at 2,134,806 to 2,135,339 _RS09540 QEN71_RS09545: QEN71_RS09545 - Dyp-type peroxidase, at 2,135,622 to 2,136,689 _RS09545 QEN71_RS09550: QEN71_RS09550 - family 1 encapsulin nanocompartment shell protein, at 2,136,682 to 2,137,485 _RS09550 QEN71_RS09555: QEN71_RS09555 - TetR/AcrR family transcriptional regulator, at 2,137,512 to 2,138,093 _RS09555 Position (kb) 2135 2136 2137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2134.811 kb on + strandat 2134.846 kb on + strandat 2134.846 kb on + strandat 2134.847 kb on - strandat 2135.217 kb on + strand, within QEN71_RS09540at 2135.217 kb on + strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.230 kb on - strand, within QEN71_RS09540at 2135.306 kb on + strandat 2135.306 kb on + strandat 2135.307 kb on - strandat 2135.337 kb on + strandat 2135.474 kb on + strandat 2135.474 kb on + strandat 2135.474 kb on + strandat 2135.475 kb on - strandat 2135.761 kb on + strand, within QEN71_RS09545at 2135.761 kb on + strand, within QEN71_RS09545at 2136.156 kb on + strand, within QEN71_RS09545at 2136.156 kb on + strand, within QEN71_RS09545at 2136.156 kb on + strand, within QEN71_RS09545at 2136.157 kb on - strand, within QEN71_RS09545at 2136.174 kb on + strand, within QEN71_RS09545at 2136.175 kb on - strand, within QEN71_RS09545at 2136.175 kb on - strand, within QEN71_RS09545at 2136.175 kb on - strand, within QEN71_RS09545at 2136.390 kb on + strand, within QEN71_RS09545at 2136.390 kb on + strand, within QEN71_RS09545at 2136.472 kb on - strand, within QEN71_RS09545at 2136.472 kb on - strand, within QEN71_RS09545at 2136.472 kb on - strand, within QEN71_RS09545at 2136.472 kb on - strand, within QEN71_RS09545at 2136.489 kb on + strand, within QEN71_RS09545at 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.620 kb on + strandat 2136.621 kb on - strandat 2136.681 kb on + strandat 2136.682 kb on - strandat 2137.018 kb on + strand, within QEN71_RS09550at 2137.018 kb on + strand, within QEN71_RS09550at 2137.186 kb on + strand, within QEN71_RS09550at 2137.213 kb on + strand, within QEN71_RS09550at 2137.213 kb on + strand, within QEN71_RS09550at 2137.213 kb on + strand, within QEN71_RS09550at 2137.214 kb on - strand, within QEN71_RS09550at 2137.483 kb on + strandat 2137.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,134,811 + +0.9
2,134,846 + +1.5
2,134,846 + +1.5
2,134,847 - +1.1
2,135,217 + QEN71_RS09540 0.77 +1.8
2,135,217 + QEN71_RS09540 0.77 +3.1
2,135,218 - QEN71_RS09540 0.77 +1.7
2,135,218 - QEN71_RS09540 0.77 +1.5
2,135,218 - QEN71_RS09540 0.77 -0.3
2,135,218 - QEN71_RS09540 0.77 +1.6
2,135,229 + QEN71_RS09540 0.79 +3.1
2,135,229 + QEN71_RS09540 0.79 +1.7
2,135,229 + QEN71_RS09540 0.79 +2.7
2,135,229 + QEN71_RS09540 0.79 +1.9
2,135,230 - QEN71_RS09540 0.79 +0.7
2,135,306 + +3.1
2,135,306 + +3.2
2,135,307 - +1.6
2,135,337 + +3.4
2,135,474 + +3.2
2,135,474 + +3.4
2,135,474 + +3.4
2,135,475 - +2.6
2,135,761 + QEN71_RS09545 0.13 -2.0
2,135,761 + QEN71_RS09545 0.13 -0.1
2,136,156 + QEN71_RS09545 0.50 -2.0
2,136,156 + QEN71_RS09545 0.50 -2.5
2,136,156 + QEN71_RS09545 0.50 -1.4
2,136,157 - QEN71_RS09545 0.50 -0.1
2,136,174 + QEN71_RS09545 0.52 -2.0
2,136,175 - QEN71_RS09545 0.52 -0.6
2,136,175 - QEN71_RS09545 0.52 -0.8
2,136,175 - QEN71_RS09545 0.52 +0.2
2,136,390 + QEN71_RS09545 0.72 -1.0
2,136,390 + QEN71_RS09545 0.72 -0.1
2,136,472 - QEN71_RS09545 0.80 -1.4
2,136,472 - QEN71_RS09545 0.80 +0.6
2,136,472 - QEN71_RS09545 0.80 +0.9
2,136,472 - QEN71_RS09545 0.80 -0.5
2,136,489 + QEN71_RS09545 0.81 -0.8
2,136,620 + -1.0
2,136,620 + -0.4
2,136,620 + -2.8
2,136,620 + -1.2
2,136,620 + -0.2
2,136,620 + -0.4
2,136,620 + -1.5
2,136,620 + -0.8
2,136,620 + -0.1
2,136,620 + -2.1
2,136,621 - +0.4
2,136,681 + +1.7
2,136,682 - +0.9
2,137,018 + QEN71_RS09550 0.42 -1.6
2,137,018 + QEN71_RS09550 0.42 -0.8
2,137,186 + QEN71_RS09550 0.63 -2.2
2,137,213 + QEN71_RS09550 0.66 -0.3
2,137,213 + QEN71_RS09550 0.66 -2.0
2,137,213 + QEN71_RS09550 0.66 +1.8
2,137,214 - QEN71_RS09550 0.66 +0.6
2,137,483 + +0.1
2,137,484 - -0.2

Or see this region's nucleotide sequence