Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09535

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09530 and QEN71_RS09535 are separated by 325 nucleotidesQEN71_RS09535 and QEN71_RS09540 are separated by 270 nucleotides QEN71_RS09530: QEN71_RS09530 - isoprenylcysteine carboxylmethyltransferase family protein, at 2,132,471 to 2,133,079 _RS09530 QEN71_RS09535: QEN71_RS09535 - porin, at 2,133,405 to 2,134,535 _RS09535 QEN71_RS09540: QEN71_RS09540 - formaldehyde-activating enzyme, at 2,134,806 to 2,135,339 _RS09540 Position (kb) 2133 2134 2135Strain fitness (log2 ratio) -1 0 1 2 3at 2132.470 kb on + strandat 2132.544 kb on + strand, within QEN71_RS09530at 2132.545 kb on - strand, within QEN71_RS09530at 2132.545 kb on - strand, within QEN71_RS09530at 2132.556 kb on + strand, within QEN71_RS09530at 2132.829 kb on + strand, within QEN71_RS09530at 2132.830 kb on - strand, within QEN71_RS09530at 2132.895 kb on - strand, within QEN71_RS09530at 2133.016 kb on + strand, within QEN71_RS09530at 2133.016 kb on + strand, within QEN71_RS09530at 2133.016 kb on + strand, within QEN71_RS09530at 2133.017 kb on - strand, within QEN71_RS09530at 2133.042 kb on - strandat 2133.109 kb on - strandat 2133.195 kb on + strandat 2133.195 kb on + strandat 2133.330 kb on - strandat 2133.443 kb on - strandat 2133.768 kb on + strand, within QEN71_RS09535at 2133.769 kb on - strand, within QEN71_RS09535at 2133.791 kb on + strand, within QEN71_RS09535at 2133.810 kb on + strand, within QEN71_RS09535at 2133.810 kb on + strand, within QEN71_RS09535at 2133.810 kb on + strand, within QEN71_RS09535at 2133.870 kb on + strand, within QEN71_RS09535at 2133.885 kb on + strand, within QEN71_RS09535at 2134.023 kb on + strand, within QEN71_RS09535at 2134.024 kb on - strand, within QEN71_RS09535at 2134.024 kb on - strand, within QEN71_RS09535at 2134.035 kb on + strand, within QEN71_RS09535at 2134.035 kb on + strand, within QEN71_RS09535at 2134.036 kb on - strand, within QEN71_RS09535at 2134.036 kb on - strand, within QEN71_RS09535at 2134.168 kb on - strand, within QEN71_RS09535at 2134.263 kb on + strand, within QEN71_RS09535at 2134.264 kb on - strand, within QEN71_RS09535at 2134.281 kb on + strand, within QEN71_RS09535at 2134.281 kb on + strand, within QEN71_RS09535at 2134.282 kb on - strand, within QEN71_RS09535at 2134.282 kb on - strand, within QEN71_RS09535at 2134.282 kb on - strand, within QEN71_RS09535at 2134.317 kb on + strand, within QEN71_RS09535at 2134.317 kb on + strand, within QEN71_RS09535at 2134.377 kb on + strand, within QEN71_RS09535at 2134.377 kb on + strand, within QEN71_RS09535at 2134.377 kb on + strand, within QEN71_RS09535at 2134.377 kb on + strand, within QEN71_RS09535at 2134.378 kb on - strand, within QEN71_RS09535at 2134.404 kb on + strand, within QEN71_RS09535at 2134.419 kb on + strand, within QEN71_RS09535at 2134.419 kb on + strand, within QEN71_RS09535at 2134.419 kb on + strand, within QEN71_RS09535at 2134.608 kb on - strandat 2134.811 kb on + strandat 2134.846 kb on + strandat 2134.846 kb on + strandat 2134.847 kb on - strandat 2135.217 kb on + strand, within QEN71_RS09540at 2135.217 kb on + strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.218 kb on - strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.229 kb on + strand, within QEN71_RS09540at 2135.230 kb on - strand, within QEN71_RS09540at 2135.306 kb on + strandat 2135.306 kb on + strandat 2135.307 kb on - strandat 2135.337 kb on + strandat 2135.474 kb on + strandat 2135.474 kb on + strandat 2135.474 kb on + strandat 2135.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,132,470 + +1.8
2,132,544 + QEN71_RS09530 0.12 +0.5
2,132,545 - QEN71_RS09530 0.12 +0.7
2,132,545 - QEN71_RS09530 0.12 +1.1
2,132,556 + QEN71_RS09530 0.14 +1.4
2,132,829 + QEN71_RS09530 0.59 -0.1
2,132,830 - QEN71_RS09530 0.59 +1.1
2,132,895 - QEN71_RS09530 0.70 -0.3
2,133,016 + QEN71_RS09530 0.89 +0.4
2,133,016 + QEN71_RS09530 0.89 +0.2
2,133,016 + QEN71_RS09530 0.89 -0.4
2,133,017 - QEN71_RS09530 0.90 +0.8
2,133,042 - +0.4
2,133,109 - +0.8
2,133,195 + -0.1
2,133,195 + +1.6
2,133,330 - +0.5
2,133,443 - +0.8
2,133,768 + QEN71_RS09535 0.32 +0.3
2,133,769 - QEN71_RS09535 0.32 +1.3
2,133,791 + QEN71_RS09535 0.34 +0.9
2,133,810 + QEN71_RS09535 0.36 +1.5
2,133,810 + QEN71_RS09535 0.36 +1.1
2,133,810 + QEN71_RS09535 0.36 +1.5
2,133,870 + QEN71_RS09535 0.41 +1.5
2,133,885 + QEN71_RS09535 0.42 +0.9
2,134,023 + QEN71_RS09535 0.55 +1.0
2,134,024 - QEN71_RS09535 0.55 +0.4
2,134,024 - QEN71_RS09535 0.55 +1.0
2,134,035 + QEN71_RS09535 0.56 +0.9
2,134,035 + QEN71_RS09535 0.56 +0.8
2,134,036 - QEN71_RS09535 0.56 +1.2
2,134,036 - QEN71_RS09535 0.56 +0.5
2,134,168 - QEN71_RS09535 0.67 +0.4
2,134,263 + QEN71_RS09535 0.76 +1.8
2,134,264 - QEN71_RS09535 0.76 -0.8
2,134,281 + QEN71_RS09535 0.77 +1.5
2,134,281 + QEN71_RS09535 0.77 +0.0
2,134,282 - QEN71_RS09535 0.78 +0.8
2,134,282 - QEN71_RS09535 0.78 +0.6
2,134,282 - QEN71_RS09535 0.78 +0.7
2,134,317 + QEN71_RS09535 0.81 +1.2
2,134,317 + QEN71_RS09535 0.81 +1.7
2,134,377 + QEN71_RS09535 0.86 +0.9
2,134,377 + QEN71_RS09535 0.86 +1.3
2,134,377 + QEN71_RS09535 0.86 -1.3
2,134,377 + QEN71_RS09535 0.86 +1.1
2,134,378 - QEN71_RS09535 0.86 +0.8
2,134,404 + QEN71_RS09535 0.88 +1.1
2,134,419 + QEN71_RS09535 0.90 +1.1
2,134,419 + QEN71_RS09535 0.90 +1.3
2,134,419 + QEN71_RS09535 0.90 +1.8
2,134,608 - +0.9
2,134,811 + +0.9
2,134,846 + +1.5
2,134,846 + +1.5
2,134,847 - +1.1
2,135,217 + QEN71_RS09540 0.77 +1.8
2,135,217 + QEN71_RS09540 0.77 +3.1
2,135,218 - QEN71_RS09540 0.77 +1.7
2,135,218 - QEN71_RS09540 0.77 +1.5
2,135,218 - QEN71_RS09540 0.77 -0.3
2,135,218 - QEN71_RS09540 0.77 +1.6
2,135,229 + QEN71_RS09540 0.79 +3.1
2,135,229 + QEN71_RS09540 0.79 +1.7
2,135,229 + QEN71_RS09540 0.79 +2.7
2,135,229 + QEN71_RS09540 0.79 +1.9
2,135,230 - QEN71_RS09540 0.79 +0.7
2,135,306 + +3.1
2,135,306 + +3.2
2,135,307 - +1.6
2,135,337 + +3.4
2,135,474 + +3.2
2,135,474 + +3.4
2,135,474 + +3.4
2,135,475 - +2.6

Or see this region's nucleotide sequence