Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08495

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08485 and QEN71_RS08490 are separated by 47 nucleotidesQEN71_RS08490 and QEN71_RS08495 are separated by 107 nucleotidesQEN71_RS08495 and QEN71_RS08500 overlap by 31 nucleotides QEN71_RS08485: QEN71_RS08485 - glycosyltransferase family 4 protein, at 1,894,830 to 1,895,918 _RS08485 QEN71_RS08490: QEN71_RS08490 - IS30 family transposase, at 1,895,966 to 1,896,650 _RS08490 QEN71_RS08495: QEN71_RS08495 - acyltransferase family protein, at 1,896,758 to 1,897,738 _RS08495 QEN71_RS08500: QEN71_RS08500 - IS5 family transposase, at 1,897,708 to 1,898,519 _RS08500 Position (kb) 1896 1897 1898Strain fitness (log2 ratio) -2 -1 0 1 2at 1895.797 kb on - strand, within QEN71_RS08485at 1895.821 kb on + strandat 1895.856 kb on + strandat 1895.857 kb on - strandat 1895.936 kb on - strandat 1896.315 kb on + strand, within QEN71_RS08490at 1896.315 kb on + strand, within QEN71_RS08490at 1896.316 kb on - strand, within QEN71_RS08490at 1896.372 kb on - strand, within QEN71_RS08490at 1896.372 kb on - strand, within QEN71_RS08490at 1896.376 kb on - strand, within QEN71_RS08490at 1896.383 kb on + strand, within QEN71_RS08490at 1896.383 kb on + strand, within QEN71_RS08490at 1896.426 kb on - strand, within QEN71_RS08490at 1896.429 kb on + strand, within QEN71_RS08490at 1896.429 kb on + strand, within QEN71_RS08490at 1896.429 kb on + strand, within QEN71_RS08490at 1896.429 kb on + strand, within QEN71_RS08490at 1896.429 kb on + strand, within QEN71_RS08490at 1896.429 kb on + strand, within QEN71_RS08490at 1896.430 kb on - strand, within QEN71_RS08490at 1896.787 kb on + strandat 1896.788 kb on - strandat 1896.821 kb on + strandat 1896.984 kb on + strand, within QEN71_RS08495at 1896.985 kb on - strand, within QEN71_RS08495at 1896.985 kb on - strand, within QEN71_RS08495at 1896.985 kb on - strand, within QEN71_RS08495at 1896.985 kb on - strand, within QEN71_RS08495at 1897.067 kb on - strand, within QEN71_RS08495at 1897.144 kb on + strand, within QEN71_RS08495at 1897.198 kb on + strand, within QEN71_RS08495at 1897.267 kb on - strand, within QEN71_RS08495at 1897.310 kb on - strand, within QEN71_RS08495at 1897.336 kb on + strand, within QEN71_RS08495at 1897.337 kb on - strand, within QEN71_RS08495at 1897.450 kb on - strand, within QEN71_RS08495at 1897.469 kb on + strand, within QEN71_RS08495at 1897.560 kb on + strand, within QEN71_RS08495at 1897.561 kb on - strand, within QEN71_RS08495at 1897.622 kb on + strand, within QEN71_RS08495at 1897.623 kb on - strand, within QEN71_RS08495at 1897.645 kb on + strandat 1897.645 kb on + strandat 1897.652 kb on - strandat 1897.700 kb on + strandat 1897.928 kb on - strand, within QEN71_RS08500at 1897.928 kb on - strand, within QEN71_RS08500at 1897.940 kb on + strand, within QEN71_RS08500at 1897.941 kb on - strand, within QEN71_RS08500at 1898.355 kb on + strand, within QEN71_RS08500at 1898.355 kb on + strand, within QEN71_RS08500at 1898.356 kb on - strand, within QEN71_RS08500at 1898.399 kb on + strand, within QEN71_RS08500at 1898.400 kb on - strand, within QEN71_RS08500at 1898.400 kb on - strand, within QEN71_RS08500at 1898.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,895,797 - QEN71_RS08485 0.89 -0.9
1,895,821 + +0.7
1,895,856 + -0.1
1,895,857 - +1.6
1,895,936 - +0.7
1,896,315 + QEN71_RS08490 0.51 -0.0
1,896,315 + QEN71_RS08490 0.51 -0.8
1,896,316 - QEN71_RS08490 0.51 -0.1
1,896,372 - QEN71_RS08490 0.59 -0.3
1,896,372 - QEN71_RS08490 0.59 +1.8
1,896,376 - QEN71_RS08490 0.60 -0.3
1,896,383 + QEN71_RS08490 0.61 -1.8
1,896,383 + QEN71_RS08490 0.61 -0.3
1,896,426 - QEN71_RS08490 0.67 +0.3
1,896,429 + QEN71_RS08490 0.68 -0.6
1,896,429 + QEN71_RS08490 0.68 +0.8
1,896,429 + QEN71_RS08490 0.68 -0.6
1,896,429 + QEN71_RS08490 0.68 +0.9
1,896,429 + QEN71_RS08490 0.68 -1.2
1,896,429 + QEN71_RS08490 0.68 -0.4
1,896,430 - QEN71_RS08490 0.68 +1.0
1,896,787 + -1.5
1,896,788 - -0.1
1,896,821 + -0.8
1,896,984 + QEN71_RS08495 0.23 -0.2
1,896,985 - QEN71_RS08495 0.23 -0.6
1,896,985 - QEN71_RS08495 0.23 -0.8
1,896,985 - QEN71_RS08495 0.23 -0.0
1,896,985 - QEN71_RS08495 0.23 +0.5
1,897,067 - QEN71_RS08495 0.31 -2.0
1,897,144 + QEN71_RS08495 0.39 -1.2
1,897,198 + QEN71_RS08495 0.45 +0.2
1,897,267 - QEN71_RS08495 0.52 +0.2
1,897,310 - QEN71_RS08495 0.56 -0.2
1,897,336 + QEN71_RS08495 0.59 -2.3
1,897,337 - QEN71_RS08495 0.59 +0.2
1,897,450 - QEN71_RS08495 0.71 +0.9
1,897,469 + QEN71_RS08495 0.72 +0.2
1,897,560 + QEN71_RS08495 0.82 +0.3
1,897,561 - QEN71_RS08495 0.82 -0.4
1,897,622 + QEN71_RS08495 0.88 -0.3
1,897,623 - QEN71_RS08495 0.88 -0.4
1,897,645 + +0.6
1,897,645 + -0.3
1,897,652 - +1.2
1,897,700 + -0.8
1,897,928 - QEN71_RS08500 0.27 +1.2
1,897,928 - QEN71_RS08500 0.27 +0.2
1,897,940 + QEN71_RS08500 0.29 +0.8
1,897,941 - QEN71_RS08500 0.29 +0.2
1,898,355 + QEN71_RS08500 0.80 +0.1
1,898,355 + QEN71_RS08500 0.80 +0.1
1,898,356 - QEN71_RS08500 0.80 -2.0
1,898,399 + QEN71_RS08500 0.85 +0.7
1,898,400 - QEN71_RS08500 0.85 +0.4
1,898,400 - QEN71_RS08500 0.85 -1.5
1,898,672 - +0.2

Or see this region's nucleotide sequence