Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03960

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03955 and QEN71_RS03960 are separated by 156 nucleotidesQEN71_RS03960 and QEN71_RS03965 are separated by 414 nucleotides QEN71_RS03955: QEN71_RS03955 - hypothetical protein, at 875,179 to 876,171 _RS03955 QEN71_RS03960: QEN71_RS03960 - GNAT family N-acetyltransferase, at 876,328 to 876,894 _RS03960 QEN71_RS03965: QEN71_RS03965 - MFS transporter, at 877,309 to 878,610 _RS03965 Position (kb) 876 877Strain fitness (log2 ratio) -2 -1 0 1 2 3at 875.330 kb on + strand, within QEN71_RS03955at 875.330 kb on + strand, within QEN71_RS03955at 875.331 kb on - strand, within QEN71_RS03955at 875.369 kb on + strand, within QEN71_RS03955at 875.370 kb on - strand, within QEN71_RS03955at 875.506 kb on + strand, within QEN71_RS03955at 875.506 kb on + strand, within QEN71_RS03955at 875.506 kb on + strand, within QEN71_RS03955at 875.507 kb on - strand, within QEN71_RS03955at 875.727 kb on + strand, within QEN71_RS03955at 876.018 kb on + strand, within QEN71_RS03955at 876.019 kb on - strand, within QEN71_RS03955at 876.026 kb on + strand, within QEN71_RS03955at 876.157 kb on + strandat 876.158 kb on - strandat 876.374 kb on + strandat 876.406 kb on - strand, within QEN71_RS03960at 876.406 kb on - strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.485 kb on + strand, within QEN71_RS03960at 876.486 kb on - strand, within QEN71_RS03960at 876.486 kb on - strand, within QEN71_RS03960at 876.486 kb on - strand, within QEN71_RS03960at 876.486 kb on - strand, within QEN71_RS03960at 876.491 kb on + strand, within QEN71_RS03960at 876.491 kb on + strand, within QEN71_RS03960at 876.491 kb on + strand, within QEN71_RS03960at 876.492 kb on - strand, within QEN71_RS03960at 876.492 kb on - strand, within QEN71_RS03960at 876.492 kb on - strand, within QEN71_RS03960at 876.492 kb on - strand, within QEN71_RS03960at 876.492 kb on - strand, within QEN71_RS03960at 876.492 kb on - strand, within QEN71_RS03960at 876.722 kb on + strand, within QEN71_RS03960at 876.722 kb on + strand, within QEN71_RS03960at 876.782 kb on + strand, within QEN71_RS03960at 876.782 kb on + strand, within QEN71_RS03960at 876.782 kb on + strand, within QEN71_RS03960at 876.804 kb on + strand, within QEN71_RS03960at 876.804 kb on + strand, within QEN71_RS03960at 877.059 kb on + strandat 877.085 kb on + strandat 877.085 kb on + strandat 877.085 kb on + strandat 877.086 kb on - strandat 877.086 kb on - strandat 877.088 kb on + strandat 877.089 kb on - strandat 877.135 kb on + strandat 877.136 kb on - strandat 877.164 kb on - strandat 877.164 kb on - strandat 877.164 kb on - strandat 877.298 kb on + strandat 877.298 kb on + strandat 877.298 kb on + strandat 877.298 kb on + strandat 877.298 kb on + strandat 877.299 kb on - strandat 877.299 kb on - strandat 877.299 kb on - strandat 877.304 kb on + strandat 877.304 kb on + strandat 877.304 kb on + strandat 877.304 kb on + strandat 877.304 kb on + strandat 877.304 kb on + strandat 877.304 kb on + strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.305 kb on - strandat 877.334 kb on + strandat 877.335 kb on - strandat 877.335 kb on - strandat 877.335 kb on - strandat 877.335 kb on - strandat 877.399 kb on + strandat 877.399 kb on + strandat 877.400 kb on - strandat 877.400 kb on - strandat 877.400 kb on - strandat 877.414 kb on + strandat 877.414 kb on + strandat 877.414 kb on + strandat 877.414 kb on + strandat 877.414 kb on + strandat 877.415 kb on - strandat 877.415 kb on - strandat 877.415 kb on - strandat 877.415 kb on - strandat 877.415 kb on - strandat 877.415 kb on - strandat 877.423 kb on + strandat 877.423 kb on + strandat 877.423 kb on + strandat 877.424 kb on - strandat 877.424 kb on - strandat 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.447 kb on + strand, within QEN71_RS03965at 877.448 kb on - strand, within QEN71_RS03965at 877.448 kb on - strand, within QEN71_RS03965at 877.448 kb on - strand, within QEN71_RS03965at 877.448 kb on - strand, within QEN71_RS03965at 877.448 kb on - strand, within QEN71_RS03965at 877.549 kb on + strand, within QEN71_RS03965at 877.549 kb on + strand, within QEN71_RS03965at 877.550 kb on - strand, within QEN71_RS03965at 877.550 kb on - strand, within QEN71_RS03965at 877.550 kb on - strand, within QEN71_RS03965at 877.735 kb on + strand, within QEN71_RS03965at 877.735 kb on + strand, within QEN71_RS03965at 877.735 kb on + strand, within QEN71_RS03965at 877.735 kb on + strand, within QEN71_RS03965at 877.736 kb on - strand, within QEN71_RS03965at 877.736 kb on - strand, within QEN71_RS03965at 877.736 kb on - strand, within QEN71_RS03965at 877.736 kb on - strand, within QEN71_RS03965at 877.736 kb on - strand, within QEN71_RS03965at 877.736 kb on - strand, within QEN71_RS03965at 877.774 kb on + strand, within QEN71_RS03965at 877.774 kb on + strand, within QEN71_RS03965at 877.774 kb on + strand, within QEN71_RS03965at 877.774 kb on + strand, within QEN71_RS03965at 877.774 kb on + strand, within QEN71_RS03965at 877.774 kb on + strand, within QEN71_RS03965at 877.775 kb on - strand, within QEN71_RS03965at 877.775 kb on - strand, within QEN71_RS03965at 877.775 kb on - strand, within QEN71_RS03965at 877.775 kb on - strand, within QEN71_RS03965

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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875,330 + QEN71_RS03955 0.15 -0.6
875,330 + QEN71_RS03955 0.15 +1.0
875,331 - QEN71_RS03955 0.15 +0.5
875,369 + QEN71_RS03955 0.19 +1.2
875,370 - QEN71_RS03955 0.19 -0.4
875,506 + QEN71_RS03955 0.33 -0.0
875,506 + QEN71_RS03955 0.33 +0.1
875,506 + QEN71_RS03955 0.33 -0.3
875,507 - QEN71_RS03955 0.33 +0.7
875,727 + QEN71_RS03955 0.55 -0.1
876,018 + QEN71_RS03955 0.84 -0.1
876,019 - QEN71_RS03955 0.85 +0.2
876,026 + QEN71_RS03955 0.85 -0.6
876,157 + +0.2
876,158 - -0.3
876,374 + -0.2
876,406 - QEN71_RS03960 0.14 -0.4
876,406 - QEN71_RS03960 0.14 +2.2
876,485 + QEN71_RS03960 0.28 +0.6
876,485 + QEN71_RS03960 0.28 +0.3
876,485 + QEN71_RS03960 0.28 +0.0
876,485 + QEN71_RS03960 0.28 -0.9
876,485 + QEN71_RS03960 0.28 +0.7
876,485 + QEN71_RS03960 0.28 +0.1
876,485 + QEN71_RS03960 0.28 +0.4
876,486 - QEN71_RS03960 0.28 -0.6
876,486 - QEN71_RS03960 0.28 -1.9
876,486 - QEN71_RS03960 0.28 -1.2
876,486 - QEN71_RS03960 0.28 +0.2
876,491 + QEN71_RS03960 0.29 -1.1
876,491 + QEN71_RS03960 0.29 -1.0
876,491 + QEN71_RS03960 0.29 -0.3
876,492 - QEN71_RS03960 0.29 +0.3
876,492 - QEN71_RS03960 0.29 -0.6
876,492 - QEN71_RS03960 0.29 +0.0
876,492 - QEN71_RS03960 0.29 +1.0
876,492 - QEN71_RS03960 0.29 -0.4
876,492 - QEN71_RS03960 0.29 -0.3
876,722 + QEN71_RS03960 0.69 -0.2
876,722 + QEN71_RS03960 0.69 +0.4
876,782 + QEN71_RS03960 0.80 -0.4
876,782 + QEN71_RS03960 0.80 +0.5
876,782 + QEN71_RS03960 0.80 -0.4
876,804 + QEN71_RS03960 0.84 +0.8
876,804 + QEN71_RS03960 0.84 -0.1
877,059 + -0.2
877,085 + +0.8
877,085 + -1.3
877,085 + +0.4
877,086 - -1.2
877,086 - -0.2
877,088 + -1.0
877,089 - -0.8
877,135 + -0.3
877,136 - +1.3
877,164 - +1.0
877,164 - +0.4
877,164 - -0.5
877,298 + -1.0
877,298 + +0.8
877,298 + -0.8
877,298 + -0.4
877,298 + -0.2
877,299 - -0.5
877,299 - -1.2
877,299 - -1.0
877,304 + -0.3
877,304 + -0.3
877,304 + -1.0
877,304 + -0.6
877,304 + +0.5
877,304 + -1.2
877,304 + -2.1
877,305 - -0.3
877,305 - +0.8
877,305 - +0.1
877,305 - +1.8
877,305 - -0.0
877,305 - -0.3
877,305 - +0.3
877,305 - -0.8
877,305 - +0.5
877,305 - +1.4
877,334 + +0.2
877,335 - +1.4
877,335 - +0.3
877,335 - -1.1
877,335 - -0.3
877,399 + -0.2
877,399 + -0.7
877,400 - -1.0
877,400 - +0.3
877,400 - -0.2
877,414 + -2.1
877,414 + -0.9
877,414 + +0.4
877,414 + +0.1
877,414 + -0.4
877,415 - -0.8
877,415 - +0.2
877,415 - +0.9
877,415 - +0.2
877,415 - +0.1
877,415 - -0.1
877,423 + +0.2
877,423 + -1.0
877,423 + -0.5
877,424 - -0.7
877,424 - +1.0
877,447 + QEN71_RS03965 0.11 -0.3
877,447 + QEN71_RS03965 0.11 +0.2
877,447 + QEN71_RS03965 0.11 -0.8
877,447 + QEN71_RS03965 0.11 -1.2
877,447 + QEN71_RS03965 0.11 -0.8
877,447 + QEN71_RS03965 0.11 -1.3
877,447 + QEN71_RS03965 0.11 +0.6
877,447 + QEN71_RS03965 0.11 -0.4
877,447 + QEN71_RS03965 0.11 +0.6
877,447 + QEN71_RS03965 0.11 -0.2
877,448 - QEN71_RS03965 0.11 -1.6
877,448 - QEN71_RS03965 0.11 -1.1
877,448 - QEN71_RS03965 0.11 -0.4
877,448 - QEN71_RS03965 0.11 +1.5
877,448 - QEN71_RS03965 0.11 -0.6
877,549 + QEN71_RS03965 0.18 -0.1
877,549 + QEN71_RS03965 0.18 +0.3
877,550 - QEN71_RS03965 0.19 +0.5
877,550 - QEN71_RS03965 0.19 -0.2
877,550 - QEN71_RS03965 0.19 -0.2
877,735 + QEN71_RS03965 0.33 -0.8
877,735 + QEN71_RS03965 0.33 -0.5
877,735 + QEN71_RS03965 0.33 +0.8
877,735 + QEN71_RS03965 0.33 -1.0
877,736 - QEN71_RS03965 0.33 -0.8
877,736 - QEN71_RS03965 0.33 -0.8
877,736 - QEN71_RS03965 0.33 +0.5
877,736 - QEN71_RS03965 0.33 +0.0
877,736 - QEN71_RS03965 0.33 +2.2
877,736 - QEN71_RS03965 0.33 +3.0
877,774 + QEN71_RS03965 0.36 +0.2
877,774 + QEN71_RS03965 0.36 -1.6
877,774 + QEN71_RS03965 0.36 -0.2
877,774 + QEN71_RS03965 0.36 -1.6
877,774 + QEN71_RS03965 0.36 +0.3
877,774 + QEN71_RS03965 0.36 -0.7
877,775 - QEN71_RS03965 0.36 -0.8
877,775 - QEN71_RS03965 0.36 -0.5
877,775 - QEN71_RS03965 0.36 +1.4
877,775 - QEN71_RS03965 0.36 +1.9

Or see this region's nucleotide sequence