Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02740

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02735 and QEN71_RS02740 overlap by 19 nucleotidesQEN71_RS02740 and QEN71_RS02745 are separated by 17 nucleotides QEN71_RS02735: QEN71_RS02735 - N-acetylmuramoyl-L-alanine amidase, at 613,662 to 615,197 _RS02735 QEN71_RS02740: QEN71_RS02740 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 615,179 to 615,733 _RS02740 QEN71_RS02745: QEN71_RS02745 - tRNA epoxyqueuosine(34) reductase QueG, at 615,751 to 617,043 _RS02745 Position (kb) 615 616Strain fitness (log2 ratio) -2 -1 0 1 2at 615.740 kb on - strandat 615.750 kb on - strandat 615.750 kb on - strandat 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.016 kb on - strand, within QEN71_RS02745at 616.017 kb on + strand, within QEN71_RS02745at 616.017 kb on + strand, within QEN71_RS02745at 616.018 kb on - strand, within QEN71_RS02745at 616.018 kb on - strand, within QEN71_RS02745at 616.018 kb on - strand, within QEN71_RS02745at 616.018 kb on - strand, within QEN71_RS02745at 616.018 kb on - strand, within QEN71_RS02745at 616.018 kb on - strand, within QEN71_RS02745at 616.100 kb on - strand, within QEN71_RS02745at 616.100 kb on - strand, within QEN71_RS02745at 616.100 kb on - strand, within QEN71_RS02745at 616.246 kb on + strand, within QEN71_RS02745at 616.247 kb on - strand, within QEN71_RS02745at 616.247 kb on - strand, within QEN71_RS02745at 616.264 kb on + strand, within QEN71_RS02745at 616.264 kb on + strand, within QEN71_RS02745at 616.264 kb on + strand, within QEN71_RS02745at 616.265 kb on - strand, within QEN71_RS02745at 616.265 kb on - strand, within QEN71_RS02745at 616.331 kb on - strand, within QEN71_RS02745at 616.458 kb on - strand, within QEN71_RS02745at 616.598 kb on - strand, within QEN71_RS02745at 616.598 kb on - strand, within QEN71_RS02745at 616.627 kb on + strand, within QEN71_RS02745at 616.627 kb on + strand, within QEN71_RS02745at 616.627 kb on + strand, within QEN71_RS02745at 616.628 kb on - strand, within QEN71_RS02745at 616.628 kb on - strand, within QEN71_RS02745at 616.628 kb on - strand, within QEN71_RS02745at 616.653 kb on + strand, within QEN71_RS02745at 616.653 kb on + strand, within QEN71_RS02745at 616.653 kb on + strand, within QEN71_RS02745at 616.653 kb on + strand, within QEN71_RS02745at 616.654 kb on - strand, within QEN71_RS02745at 616.654 kb on - strand, within QEN71_RS02745at 616.693 kb on + strand, within QEN71_RS02745at 616.693 kb on + strand, within QEN71_RS02745at 616.693 kb on + strand, within QEN71_RS02745at 616.694 kb on - strand, within QEN71_RS02745

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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615,740 - +0.4
615,750 - -0.7
615,750 - -0.7
616,016 - QEN71_RS02745 0.20 +0.1
616,016 - QEN71_RS02745 0.20 +0.3
616,016 - QEN71_RS02745 0.20 +0.1
616,016 - QEN71_RS02745 0.20 -0.1
616,016 - QEN71_RS02745 0.20 -0.6
616,016 - QEN71_RS02745 0.20 +0.2
616,016 - QEN71_RS02745 0.20 -1.2
616,016 - QEN71_RS02745 0.20 -2.0
616,016 - QEN71_RS02745 0.20 -0.6
616,016 - QEN71_RS02745 0.20 -1.0
616,016 - QEN71_RS02745 0.20 -0.1
616,016 - QEN71_RS02745 0.20 +0.2
616,016 - QEN71_RS02745 0.20 -0.7
616,017 + QEN71_RS02745 0.21 -0.3
616,017 + QEN71_RS02745 0.21 -0.6
616,018 - QEN71_RS02745 0.21 -1.2
616,018 - QEN71_RS02745 0.21 -2.0
616,018 - QEN71_RS02745 0.21 -0.0
616,018 - QEN71_RS02745 0.21 -0.8
616,018 - QEN71_RS02745 0.21 -0.9
616,018 - QEN71_RS02745 0.21 -0.2
616,100 - QEN71_RS02745 0.27 +0.1
616,100 - QEN71_RS02745 0.27 -1.2
616,100 - QEN71_RS02745 0.27 -1.2
616,246 + QEN71_RS02745 0.38 -1.2
616,247 - QEN71_RS02745 0.38 +0.2
616,247 - QEN71_RS02745 0.38 +1.0
616,264 + QEN71_RS02745 0.40 +0.4
616,264 + QEN71_RS02745 0.40 +0.6
616,264 + QEN71_RS02745 0.40 -0.8
616,265 - QEN71_RS02745 0.40 +0.2
616,265 - QEN71_RS02745 0.40 +0.2
616,331 - QEN71_RS02745 0.45 -0.9
616,458 - QEN71_RS02745 0.55 -1.8
616,598 - QEN71_RS02745 0.66 -0.2
616,598 - QEN71_RS02745 0.66 +1.1
616,627 + QEN71_RS02745 0.68 -0.2
616,627 + QEN71_RS02745 0.68 +0.2
616,627 + QEN71_RS02745 0.68 -1.8
616,628 - QEN71_RS02745 0.68 +0.6
616,628 - QEN71_RS02745 0.68 -0.8
616,628 - QEN71_RS02745 0.68 -0.2
616,653 + QEN71_RS02745 0.70 -0.4
616,653 + QEN71_RS02745 0.70 -0.2
616,653 + QEN71_RS02745 0.70 +0.1
616,653 + QEN71_RS02745 0.70 +0.5
616,654 - QEN71_RS02745 0.70 +2.3
616,654 - QEN71_RS02745 0.70 +0.9
616,693 + QEN71_RS02745 0.73 +0.5
616,693 + QEN71_RS02745 0.73 -0.3
616,693 + QEN71_RS02745 0.73 +0.3
616,694 - QEN71_RS02745 0.73 +0.2

Or see this region's nucleotide sequence