Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01240

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01235 and QEN71_RS01240 are separated by 521 nucleotidesQEN71_RS01240 and QEN71_RS01245 are separated by 135 nucleotidesQEN71_RS01245 and QEN71_RS01250 are separated by 42 nucleotidesQEN71_RS01250 and QEN71_RS01255 are separated by 40 nucleotides QEN71_RS01235: QEN71_RS01235 - transcriptional regulator, at 281,413 to 282,159 _RS01235 QEN71_RS01240: QEN71_RS01240 - acyl-ACP desaturase, at 282,681 to 283,553 _RS01240 QEN71_RS01245: QEN71_RS01245 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 283,689 to 284,171 _RS01245 QEN71_RS01250: QEN71_RS01250 - hypothetical protein, at 284,214 to 284,450 _RS01250 QEN71_RS01255: QEN71_RS01255 - type III pantothenate kinase, at 284,491 to 285,345 _RS01255 Position (kb) 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 282.199 kb on + strandat 282.199 kb on + strandat 282.199 kb on + strandat 282.199 kb on + strandat 282.199 kb on + strandat 282.199 kb on + strandat 282.199 kb on + strandat 282.199 kb on + strandat 282.200 kb on - strandat 282.200 kb on - strandat 282.200 kb on - strandat 282.263 kb on + strandat 282.263 kb on + strandat 282.263 kb on + strandat 282.307 kb on + strandat 282.307 kb on + strandat 282.307 kb on + strandat 282.307 kb on + strandat 282.307 kb on + strandat 282.307 kb on + strandat 282.308 kb on - strandat 282.308 kb on - strandat 282.308 kb on - strandat 282.308 kb on - strandat 282.308 kb on - strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.310 kb on + strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.311 kb on - strandat 282.317 kb on + strandat 282.317 kb on + strandat 282.317 kb on + strandat 282.318 kb on - strandat 282.522 kb on + strandat 282.522 kb on + strandat 282.567 kb on + strandat 282.568 kb on - strandat 282.629 kb on + strandat 282.629 kb on + strandat 282.629 kb on + strandat 282.629 kb on + strandat 282.629 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.632 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.644 kb on + strandat 282.696 kb on + strandat 282.708 kb on + strandat 283.131 kb on + strand, within QEN71_RS01240at 283.131 kb on + strand, within QEN71_RS01240at 283.131 kb on + strand, within QEN71_RS01240at 283.131 kb on + strand, within QEN71_RS01240at 283.173 kb on + strand, within QEN71_RS01240at 283.182 kb on + strand, within QEN71_RS01240at 283.182 kb on + strand, within QEN71_RS01240at 283.577 kb on + strandat 283.577 kb on + strandat 283.577 kb on + strandat 283.577 kb on + strandat 283.577 kb on + strandat 283.577 kb on + strandat 283.577 kb on + strandat 283.578 kb on - strandat 283.578 kb on - strandat 283.578 kb on - strandat 283.676 kb on + strandat 283.676 kb on + strandat 283.676 kb on + strandat 283.676 kb on + strandat 283.676 kb on + strandat 284.216 kb on - strandat 284.437 kb on - strandat 284.474 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.476 kb on + strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strandat 284.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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282,199 + +0.2
282,199 + -0.3
282,199 + -0.8
282,199 + -0.7
282,199 + -0.3
282,199 + -0.4
282,199 + -0.0
282,199 + -0.3
282,200 - +1.6
282,200 - +0.2
282,200 - -0.2
282,263 + +1.4
282,263 + -0.2
282,263 + -1.0
282,307 + +0.5
282,307 + -0.5
282,307 + +1.2
282,307 + -1.2
282,307 + +1.2
282,307 + +0.6
282,308 - +2.2
282,308 - -2.2
282,308 - -1.0
282,308 - -0.6
282,308 - -1.2
282,310 + -0.7
282,310 + +0.7
282,310 + -0.4
282,310 + -0.7
282,310 + +0.9
282,310 + -1.8
282,310 + +0.9
282,310 + -2.0
282,310 + -0.5
282,311 - -0.2
282,311 - -1.7
282,311 - +0.2
282,311 - -1.0
282,311 - -0.8
282,311 - -0.3
282,311 - -1.9
282,311 - -2.3
282,311 - +0.6
282,311 - -0.2
282,317 + +0.6
282,317 + +0.4
282,317 + -0.6
282,318 - -1.3
282,522 + -1.4
282,522 + -0.6
282,567 + +0.4
282,568 - +0.8
282,629 + -0.6
282,629 + -2.0
282,629 + -1.0
282,629 + +1.7
282,629 + -1.6
282,632 + -0.8
282,632 + +0.4
282,632 + -2.7
282,632 + +1.4
282,632 + -1.2
282,632 + -0.6
282,632 + -2.2
282,632 + +0.7
282,644 + +0.0
282,644 + -1.4
282,644 + +1.2
282,644 + +1.8
282,644 + -1.9
282,644 + +0.8
282,644 + +0.3
282,644 + -0.6
282,644 + -0.7
282,696 + +0.2
282,708 + +0.4
283,131 + QEN71_RS01240 0.52 -0.2
283,131 + QEN71_RS01240 0.52 +0.2
283,131 + QEN71_RS01240 0.52 -1.3
283,131 + QEN71_RS01240 0.52 -0.6
283,173 + QEN71_RS01240 0.56 -0.8
283,182 + QEN71_RS01240 0.57 +0.2
283,182 + QEN71_RS01240 0.57 -0.4
283,577 + -1.1
283,577 + -1.5
283,577 + -0.4
283,577 + -0.2
283,577 + -0.4
283,577 + -0.8
283,577 + -0.4
283,578 - -0.8
283,578 - -1.3
283,578 - +0.2
283,676 + -1.4
283,676 + -0.4
283,676 + -0.4
283,676 + -1.2
283,676 + -0.1
284,216 - -0.4
284,437 - +2.2
284,474 + -0.2
284,476 + -0.8
284,476 + -2.7
284,476 + -2.1
284,476 + -0.6
284,476 + -0.2
284,476 + -1.2
284,476 + -1.3
284,476 + +0.1
284,476 + -0.2
284,476 + +0.0
284,476 + +0.6
284,476 + +1.1
284,476 + -0.3
284,476 + -1.3
284,476 + +0.9
284,476 + +0.1
284,476 + -0.5
284,476 + -0.5
284,476 + +0.4
284,476 + +0.9
284,477 - +0.1
284,477 - -0.4
284,477 - -0.9
284,477 - +1.5
284,477 - +0.2
284,477 - -0.6
284,477 - +0.4
284,477 - +0.4
284,477 - +0.3
284,477 - -0.4
284,477 - -0.4
284,477 - -0.9
284,477 - +0.2
284,477 - -1.3
284,477 - -0.2
284,477 - -0.2
284,477 - -1.4
284,477 - -0.8
284,477 - -1.2
284,477 - -3.2
284,477 - +0.2

Or see this region's nucleotide sequence