Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00415

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00410 and QEN71_RS00415 are separated by 11 nucleotidesQEN71_RS00415 and QEN71_RS00420 are separated by 66 nucleotides QEN71_RS00410: QEN71_RS00410 - efflux transporter outer membrane subunit, at 85,785 to 87,275 _RS00410 QEN71_RS00415: QEN71_RS00415 - efflux RND transporter periplasmic adaptor subunit, at 87,287 to 88,555 _RS00415 QEN71_RS00420: QEN71_RS00420 - efflux RND transporter permease subunit, at 88,622 to 91,804 _RS00420 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 86.381 kb on + strand, within QEN71_RS00410at 86.381 kb on + strand, within QEN71_RS00410at 86.382 kb on - strand, within QEN71_RS00410at 86.382 kb on - strand, within QEN71_RS00410at 86.382 kb on - strand, within QEN71_RS00410at 86.635 kb on + strand, within QEN71_RS00410at 86.668 kb on + strand, within QEN71_RS00410at 86.668 kb on + strand, within QEN71_RS00410at 86.668 kb on + strand, within QEN71_RS00410at 86.669 kb on - strand, within QEN71_RS00410at 86.729 kb on - strand, within QEN71_RS00410at 87.091 kb on + strand, within QEN71_RS00410at 87.091 kb on + strand, within QEN71_RS00410at 87.169 kb on + strandat 87.169 kb on + strandat 87.169 kb on + strandat 87.169 kb on + strandat 87.169 kb on + strandat 87.170 kb on - strandat 87.170 kb on - strandat 87.170 kb on - strandat 87.202 kb on + strandat 87.202 kb on + strandat 87.202 kb on + strandat 87.202 kb on + strandat 87.203 kb on - strandat 87.203 kb on - strandat 87.481 kb on - strand, within QEN71_RS00415at 87.634 kb on - strand, within QEN71_RS00415at 87.741 kb on + strand, within QEN71_RS00415at 87.742 kb on - strand, within QEN71_RS00415at 87.742 kb on - strand, within QEN71_RS00415at 87.774 kb on + strand, within QEN71_RS00415at 87.775 kb on - strand, within QEN71_RS00415at 87.775 kb on - strand, within QEN71_RS00415at 87.807 kb on + strand, within QEN71_RS00415at 87.807 kb on + strand, within QEN71_RS00415at 87.808 kb on - strand, within QEN71_RS00415at 87.808 kb on - strand, within QEN71_RS00415at 87.808 kb on - strand, within QEN71_RS00415at 87.828 kb on + strand, within QEN71_RS00415at 87.828 kb on + strand, within QEN71_RS00415at 87.828 kb on + strand, within QEN71_RS00415at 87.829 kb on - strand, within QEN71_RS00415at 87.829 kb on - strand, within QEN71_RS00415at 87.829 kb on - strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.955 kb on - strand, within QEN71_RS00415at 87.955 kb on - strand, within QEN71_RS00415at 87.955 kb on - strand, within QEN71_RS00415at 88.128 kb on + strand, within QEN71_RS00415at 88.129 kb on - strand, within QEN71_RS00415at 88.246 kb on - strand, within QEN71_RS00415at 88.260 kb on + strand, within QEN71_RS00415at 88.261 kb on - strand, within QEN71_RS00415at 88.278 kb on + strand, within QEN71_RS00415at 88.279 kb on - strand, within QEN71_RS00415at 88.586 kb on + strandat 88.586 kb on + strandat 88.586 kb on + strandat 88.587 kb on - strandat 88.587 kb on - strandat 88.587 kb on - strandat 88.623 kb on + strandat 88.623 kb on + strandat 88.623 kb on + strandat 88.624 kb on - strandat 88.683 kb on + strandat 88.683 kb on + strandat 88.683 kb on + strandat 88.684 kb on - strandat 88.684 kb on - strandat 88.967 kb on - strand, within QEN71_RS00420at 89.062 kb on + strand, within QEN71_RS00420at 89.063 kb on - strand, within QEN71_RS00420at 89.063 kb on - strand, within QEN71_RS00420at 89.115 kb on + strand, within QEN71_RS00420at 89.115 kb on + strand, within QEN71_RS00420at 89.116 kb on - strand, within QEN71_RS00420at 89.116 kb on - strand, within QEN71_RS00420at 89.296 kb on - strand, within QEN71_RS00420at 89.296 kb on - strand, within QEN71_RS00420at 89.296 kb on - strand, within QEN71_RS00420at 89.323 kb on - strand, within QEN71_RS00420at 89.323 kb on - strand, within QEN71_RS00420at 89.323 kb on - strand, within QEN71_RS00420at 89.443 kb on - strand, within QEN71_RS00420at 89.443 kb on - strand, within QEN71_RS00420at 89.443 kb on - strand, within QEN71_RS00420at 89.469 kb on + strand, within QEN71_RS00420at 89.469 kb on + strand, within QEN71_RS00420at 89.469 kb on + strand, within QEN71_RS00420at 89.470 kb on - strand, within QEN71_RS00420at 89.470 kb on - strand, within QEN71_RS00420at 89.503 kb on + strand, within QEN71_RS00420at 89.504 kb on - strand, within QEN71_RS00420

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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86,381 + QEN71_RS00410 0.40 +0.5
86,381 + QEN71_RS00410 0.40 -0.7
86,382 - QEN71_RS00410 0.40 -0.4
86,382 - QEN71_RS00410 0.40 +0.2
86,382 - QEN71_RS00410 0.40 +0.5
86,635 + QEN71_RS00410 0.57 -0.1
86,668 + QEN71_RS00410 0.59 -0.4
86,668 + QEN71_RS00410 0.59 +0.1
86,668 + QEN71_RS00410 0.59 +0.2
86,669 - QEN71_RS00410 0.59 -0.7
86,729 - QEN71_RS00410 0.63 -1.8
87,091 + QEN71_RS00410 0.88 +0.2
87,091 + QEN71_RS00410 0.88 +0.2
87,169 + -0.7
87,169 + +0.9
87,169 + +0.6
87,169 + +0.3
87,169 + +1.4
87,170 - -0.1
87,170 - -1.8
87,170 - -1.3
87,202 + +0.1
87,202 + -0.6
87,202 + +0.3
87,202 + +0.5
87,203 - -0.6
87,203 - +0.3
87,481 - QEN71_RS00415 0.15 -0.1
87,634 - QEN71_RS00415 0.27 -0.2
87,741 + QEN71_RS00415 0.36 -1.2
87,742 - QEN71_RS00415 0.36 -0.7
87,742 - QEN71_RS00415 0.36 -1.5
87,774 + QEN71_RS00415 0.38 +0.6
87,775 - QEN71_RS00415 0.38 -0.4
87,775 - QEN71_RS00415 0.38 +0.7
87,807 + QEN71_RS00415 0.41 +0.3
87,807 + QEN71_RS00415 0.41 -0.1
87,808 - QEN71_RS00415 0.41 -1.3
87,808 - QEN71_RS00415 0.41 -0.1
87,808 - QEN71_RS00415 0.41 -1.0
87,828 + QEN71_RS00415 0.43 +0.3
87,828 + QEN71_RS00415 0.43 -1.0
87,828 + QEN71_RS00415 0.43 -0.5
87,829 - QEN71_RS00415 0.43 +0.1
87,829 - QEN71_RS00415 0.43 +0.2
87,829 - QEN71_RS00415 0.43 +2.2
87,954 + QEN71_RS00415 0.53 -1.5
87,954 + QEN71_RS00415 0.53 +1.1
87,954 + QEN71_RS00415 0.53 +0.4
87,954 + QEN71_RS00415 0.53 -0.1
87,955 - QEN71_RS00415 0.53 +0.6
87,955 - QEN71_RS00415 0.53 +0.6
87,955 - QEN71_RS00415 0.53 +0.7
88,128 + QEN71_RS00415 0.66 -1.5
88,129 - QEN71_RS00415 0.66 +0.6
88,246 - QEN71_RS00415 0.76 +0.2
88,260 + QEN71_RS00415 0.77 -0.4
88,261 - QEN71_RS00415 0.77 +0.1
88,278 + QEN71_RS00415 0.78 -0.8
88,279 - QEN71_RS00415 0.78 +0.1
88,586 + +0.9
88,586 + +0.3
88,586 + -0.1
88,587 - -1.9
88,587 - -1.8
88,587 - -0.1
88,623 + +0.2
88,623 + +1.6
88,623 + -0.4
88,624 - -1.1
88,683 + -1.2
88,683 + -0.2
88,683 + -0.1
88,684 - -0.9
88,684 - +2.5
88,967 - QEN71_RS00420 0.11 -0.8
89,062 + QEN71_RS00420 0.14 -0.4
89,063 - QEN71_RS00420 0.14 +1.0
89,063 - QEN71_RS00420 0.14 +0.4
89,115 + QEN71_RS00420 0.15 -0.4
89,115 + QEN71_RS00420 0.15 -0.3
89,116 - QEN71_RS00420 0.16 -0.5
89,116 - QEN71_RS00420 0.16 -0.1
89,296 - QEN71_RS00420 0.21 +0.3
89,296 - QEN71_RS00420 0.21 -0.2
89,296 - QEN71_RS00420 0.21 -1.3
89,323 - QEN71_RS00420 0.22 -0.6
89,323 - QEN71_RS00420 0.22 +1.0
89,323 - QEN71_RS00420 0.22 -0.7
89,443 - QEN71_RS00420 0.26 +0.2
89,443 - QEN71_RS00420 0.26 -0.3
89,443 - QEN71_RS00420 0.26 +0.1
89,469 + QEN71_RS00420 0.27 +0.4
89,469 + QEN71_RS00420 0.27 -0.4
89,469 + QEN71_RS00420 0.27 +1.0
89,470 - QEN71_RS00420 0.27 -0.7
89,470 - QEN71_RS00420 0.27 -2.5
89,503 + QEN71_RS00420 0.28 -0.1
89,504 - QEN71_RS00420 0.28 -0.9

Or see this region's nucleotide sequence