Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00410

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00405 and QEN71_RS00410 are separated by 142 nucleotidesQEN71_RS00410 and QEN71_RS00415 are separated by 11 nucleotides QEN71_RS00405: QEN71_RS00405 - MFS transporter, at 84,371 to 85,642 _RS00405 QEN71_RS00410: QEN71_RS00410 - efflux transporter outer membrane subunit, at 85,785 to 87,275 _RS00410 QEN71_RS00415: QEN71_RS00415 - efflux RND transporter periplasmic adaptor subunit, at 87,287 to 88,555 _RS00415 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 84.855 kb on + strand, within QEN71_RS00405at 84.855 kb on + strand, within QEN71_RS00405at 84.855 kb on + strand, within QEN71_RS00405at 84.855 kb on + strand, within QEN71_RS00405at 84.855 kb on + strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.856 kb on - strand, within QEN71_RS00405at 84.861 kb on + strand, within QEN71_RS00405at 84.862 kb on - strand, within QEN71_RS00405at 84.862 kb on - strand, within QEN71_RS00405at 84.862 kb on - strand, within QEN71_RS00405at 84.906 kb on - strand, within QEN71_RS00405at 84.906 kb on - strand, within QEN71_RS00405at 84.906 kb on - strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.143 kb on + strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.144 kb on - strand, within QEN71_RS00405at 85.195 kb on - strand, within QEN71_RS00405at 85.195 kb on - strand, within QEN71_RS00405at 85.195 kb on - strand, within QEN71_RS00405at 85.195 kb on - strand, within QEN71_RS00405at 85.195 kb on - strand, within QEN71_RS00405at 85.195 kb on - strand, within QEN71_RS00405at 85.479 kb on + strand, within QEN71_RS00405at 85.480 kb on - strand, within QEN71_RS00405at 85.480 kb on - strand, within QEN71_RS00405at 85.480 kb on - strand, within QEN71_RS00405at 85.480 kb on - strand, within QEN71_RS00405at 85.480 kb on - strand, within QEN71_RS00405at 85.536 kb on + strandat 85.536 kb on + strandat 85.537 kb on - strandat 85.537 kb on - strandat 85.537 kb on - strandat 85.537 kb on - strandat 85.714 kb on - strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.790 kb on + strandat 85.791 kb on - strandat 85.791 kb on - strandat 85.791 kb on - strandat 85.791 kb on - strandat 85.791 kb on - strandat 85.791 kb on - strandat 85.993 kb on + strand, within QEN71_RS00410at 85.993 kb on + strand, within QEN71_RS00410at 85.993 kb on + strand, within QEN71_RS00410at 85.993 kb on + strand, within QEN71_RS00410at 85.993 kb on + strand, within QEN71_RS00410at 85.993 kb on + strand, within QEN71_RS00410at 85.994 kb on - strand, within QEN71_RS00410at 85.994 kb on - strand, within QEN71_RS00410at 86.015 kb on - strand, within QEN71_RS00410at 86.015 kb on - strand, within QEN71_RS00410at 86.152 kb on + strand, within QEN71_RS00410at 86.173 kb on + strand, within QEN71_RS00410at 86.173 kb on + strand, within QEN71_RS00410at 86.173 kb on + strand, within QEN71_RS00410at 86.174 kb on - strand, within QEN71_RS00410at 86.381 kb on + strand, within QEN71_RS00410at 86.381 kb on + strand, within QEN71_RS00410at 86.382 kb on - strand, within QEN71_RS00410at 86.382 kb on - strand, within QEN71_RS00410at 86.382 kb on - strand, within QEN71_RS00410at 86.635 kb on + strand, within QEN71_RS00410at 86.668 kb on + strand, within QEN71_RS00410at 86.668 kb on + strand, within QEN71_RS00410at 86.668 kb on + strand, within QEN71_RS00410at 86.669 kb on - strand, within QEN71_RS00410at 86.729 kb on - strand, within QEN71_RS00410at 87.091 kb on + strand, within QEN71_RS00410at 87.091 kb on + strand, within QEN71_RS00410at 87.169 kb on + strandat 87.169 kb on + strandat 87.169 kb on + strandat 87.169 kb on + strandat 87.169 kb on + strandat 87.170 kb on - strandat 87.170 kb on - strandat 87.170 kb on - strandat 87.202 kb on + strandat 87.202 kb on + strandat 87.202 kb on + strandat 87.202 kb on + strandat 87.203 kb on - strandat 87.203 kb on - strandat 87.481 kb on - strand, within QEN71_RS00415at 87.634 kb on - strand, within QEN71_RS00415at 87.741 kb on + strand, within QEN71_RS00415at 87.742 kb on - strand, within QEN71_RS00415at 87.742 kb on - strand, within QEN71_RS00415at 87.774 kb on + strand, within QEN71_RS00415at 87.775 kb on - strand, within QEN71_RS00415at 87.775 kb on - strand, within QEN71_RS00415at 87.807 kb on + strand, within QEN71_RS00415at 87.807 kb on + strand, within QEN71_RS00415at 87.808 kb on - strand, within QEN71_RS00415at 87.808 kb on - strand, within QEN71_RS00415at 87.808 kb on - strand, within QEN71_RS00415at 87.828 kb on + strand, within QEN71_RS00415at 87.828 kb on + strand, within QEN71_RS00415at 87.828 kb on + strand, within QEN71_RS00415at 87.829 kb on - strand, within QEN71_RS00415at 87.829 kb on - strand, within QEN71_RS00415at 87.829 kb on - strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.954 kb on + strand, within QEN71_RS00415at 87.955 kb on - strand, within QEN71_RS00415at 87.955 kb on - strand, within QEN71_RS00415at 87.955 kb on - strand, within QEN71_RS00415at 88.128 kb on + strand, within QEN71_RS00415at 88.129 kb on - strand, within QEN71_RS00415at 88.246 kb on - strand, within QEN71_RS00415at 88.260 kb on + strand, within QEN71_RS00415at 88.261 kb on - strand, within QEN71_RS00415

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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84,855 + QEN71_RS00405 0.38 +0.0
84,855 + QEN71_RS00405 0.38 -0.9
84,855 + QEN71_RS00405 0.38 -0.0
84,855 + QEN71_RS00405 0.38 -1.3
84,855 + QEN71_RS00405 0.38 -0.9
84,856 - QEN71_RS00405 0.38 -0.6
84,856 - QEN71_RS00405 0.38 -0.4
84,856 - QEN71_RS00405 0.38 -0.8
84,856 - QEN71_RS00405 0.38 +0.9
84,856 - QEN71_RS00405 0.38 -0.1
84,856 - QEN71_RS00405 0.38 -1.9
84,856 - QEN71_RS00405 0.38 +1.1
84,856 - QEN71_RS00405 0.38 -0.8
84,856 - QEN71_RS00405 0.38 -1.0
84,856 - QEN71_RS00405 0.38 +0.5
84,861 + QEN71_RS00405 0.39 +0.6
84,862 - QEN71_RS00405 0.39 +0.1
84,862 - QEN71_RS00405 0.39 +0.2
84,862 - QEN71_RS00405 0.39 +0.7
84,906 - QEN71_RS00405 0.42 -1.6
84,906 - QEN71_RS00405 0.42 -0.9
84,906 - QEN71_RS00405 0.42 -1.6
85,143 + QEN71_RS00405 0.61 -0.1
85,143 + QEN71_RS00405 0.61 -0.9
85,143 + QEN71_RS00405 0.61 +0.2
85,143 + QEN71_RS00405 0.61 -1.1
85,143 + QEN71_RS00405 0.61 -0.1
85,143 + QEN71_RS00405 0.61 -1.1
85,143 + QEN71_RS00405 0.61 -0.6
85,143 + QEN71_RS00405 0.61 +1.8
85,143 + QEN71_RS00405 0.61 -0.3
85,143 + QEN71_RS00405 0.61 +0.2
85,143 + QEN71_RS00405 0.61 -0.3
85,143 + QEN71_RS00405 0.61 -0.2
85,143 + QEN71_RS00405 0.61 -0.8
85,143 + QEN71_RS00405 0.61 +1.3
85,143 + QEN71_RS00405 0.61 -0.1
85,144 - QEN71_RS00405 0.61 -0.1
85,144 - QEN71_RS00405 0.61 -0.1
85,144 - QEN71_RS00405 0.61 -0.1
85,144 - QEN71_RS00405 0.61 +0.2
85,144 - QEN71_RS00405 0.61 -1.7
85,144 - QEN71_RS00405 0.61 +0.1
85,144 - QEN71_RS00405 0.61 -0.4
85,144 - QEN71_RS00405 0.61 +0.3
85,144 - QEN71_RS00405 0.61 -0.5
85,144 - QEN71_RS00405 0.61 +0.4
85,195 - QEN71_RS00405 0.65 -0.0
85,195 - QEN71_RS00405 0.65 +0.1
85,195 - QEN71_RS00405 0.65 +1.1
85,195 - QEN71_RS00405 0.65 +0.6
85,195 - QEN71_RS00405 0.65 +1.4
85,195 - QEN71_RS00405 0.65 -1.0
85,479 + QEN71_RS00405 0.87 -1.1
85,480 - QEN71_RS00405 0.87 -0.3
85,480 - QEN71_RS00405 0.87 -0.5
85,480 - QEN71_RS00405 0.87 -0.1
85,480 - QEN71_RS00405 0.87 -0.6
85,480 - QEN71_RS00405 0.87 -0.6
85,536 + -1.0
85,536 + -0.8
85,537 - -0.9
85,537 - +0.2
85,537 - -0.4
85,537 - +0.1
85,714 - +1.2
85,790 + +0.7
85,790 + +0.5
85,790 + -1.2
85,790 + +1.5
85,790 + -0.4
85,790 + -0.1
85,790 + -1.1
85,790 + +1.6
85,791 - +0.0
85,791 - -1.0
85,791 - +0.3
85,791 - -0.0
85,791 - -1.0
85,791 - +0.9
85,993 + QEN71_RS00410 0.14 -0.8
85,993 + QEN71_RS00410 0.14 +1.7
85,993 + QEN71_RS00410 0.14 -0.7
85,993 + QEN71_RS00410 0.14 -0.4
85,993 + QEN71_RS00410 0.14 +0.0
85,993 + QEN71_RS00410 0.14 -2.3
85,994 - QEN71_RS00410 0.14 -0.3
85,994 - QEN71_RS00410 0.14 +0.1
86,015 - QEN71_RS00410 0.15 -0.8
86,015 - QEN71_RS00410 0.15 -0.1
86,152 + QEN71_RS00410 0.25 -0.2
86,173 + QEN71_RS00410 0.26 +0.8
86,173 + QEN71_RS00410 0.26 +0.8
86,173 + QEN71_RS00410 0.26 -0.4
86,174 - QEN71_RS00410 0.26 +1.3
86,381 + QEN71_RS00410 0.40 +0.5
86,381 + QEN71_RS00410 0.40 -0.7
86,382 - QEN71_RS00410 0.40 -0.4
86,382 - QEN71_RS00410 0.40 +0.2
86,382 - QEN71_RS00410 0.40 +0.5
86,635 + QEN71_RS00410 0.57 -0.1
86,668 + QEN71_RS00410 0.59 -0.4
86,668 + QEN71_RS00410 0.59 +0.1
86,668 + QEN71_RS00410 0.59 +0.2
86,669 - QEN71_RS00410 0.59 -0.7
86,729 - QEN71_RS00410 0.63 -1.8
87,091 + QEN71_RS00410 0.88 +0.2
87,091 + QEN71_RS00410 0.88 +0.2
87,169 + -0.7
87,169 + +0.9
87,169 + +0.6
87,169 + +0.3
87,169 + +1.4
87,170 - -0.1
87,170 - -1.8
87,170 - -1.3
87,202 + +0.1
87,202 + -0.6
87,202 + +0.3
87,202 + +0.5
87,203 - -0.6
87,203 - +0.3
87,481 - QEN71_RS00415 0.15 -0.1
87,634 - QEN71_RS00415 0.27 -0.2
87,741 + QEN71_RS00415 0.36 -1.2
87,742 - QEN71_RS00415 0.36 -0.7
87,742 - QEN71_RS00415 0.36 -1.5
87,774 + QEN71_RS00415 0.38 +0.6
87,775 - QEN71_RS00415 0.38 -0.4
87,775 - QEN71_RS00415 0.38 +0.7
87,807 + QEN71_RS00415 0.41 +0.3
87,807 + QEN71_RS00415 0.41 -0.1
87,808 - QEN71_RS00415 0.41 -1.3
87,808 - QEN71_RS00415 0.41 -0.1
87,808 - QEN71_RS00415 0.41 -1.0
87,828 + QEN71_RS00415 0.43 +0.3
87,828 + QEN71_RS00415 0.43 -1.0
87,828 + QEN71_RS00415 0.43 -0.5
87,829 - QEN71_RS00415 0.43 +0.1
87,829 - QEN71_RS00415 0.43 +0.2
87,829 - QEN71_RS00415 0.43 +2.2
87,954 + QEN71_RS00415 0.53 -1.5
87,954 + QEN71_RS00415 0.53 +1.1
87,954 + QEN71_RS00415 0.53 +0.4
87,954 + QEN71_RS00415 0.53 -0.1
87,955 - QEN71_RS00415 0.53 +0.6
87,955 - QEN71_RS00415 0.53 +0.6
87,955 - QEN71_RS00415 0.53 +0.7
88,128 + QEN71_RS00415 0.66 -1.5
88,129 - QEN71_RS00415 0.66 +0.6
88,246 - QEN71_RS00415 0.76 +0.2
88,260 + QEN71_RS00415 0.77 -0.4
88,261 - QEN71_RS00415 0.77 +0.1

Or see this region's nucleotide sequence