Experiment: LB_noSalt with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41805 and QEN71_RS41810 overlap by 8 nucleotides QEN71_RS41810 and QEN71_RS41815 overlap by 4 nucleotides QEN71_RS41815 and QEN71_RS41820 are separated by 223 nucleotides
QEN71_RS41805: QEN71_RS41805 - hypothetical protein, at 442,024 to 442,917
_RS41805
QEN71_RS41810: QEN71_RS41810 - hypothetical protein, at 442,910 to 443,758
_RS41810
QEN71_RS41815: QEN71_RS41815 - hypothetical protein, at 443,755 to 446,133
_RS41815
QEN71_RS41820: QEN71_RS41820 - hypothetical protein, at 446,357 to 447,148
_RS41820
Position (kb) 443
444
445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.933 kb on - strand at 442.979 kb on + strand at 442.979 kb on + strand at 442.979 kb on + strand at 442.980 kb on - strand at 442.980 kb on - strand at 442.980 kb on - strand at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.101 kb on + strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.102 kb on - strand, within QEN71_RS41810 at 443.113 kb on + strand, within QEN71_RS41810 at 443.113 kb on + strand, within QEN71_RS41810 at 443.114 kb on - strand, within QEN71_RS41810 at 443.167 kb on + strand, within QEN71_RS41810 at 443.168 kb on - strand, within QEN71_RS41810 at 443.168 kb on - strand, within QEN71_RS41810 at 443.301 kb on + strand, within QEN71_RS41810 at 443.328 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.341 kb on + strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.342 kb on - strand, within QEN71_RS41810 at 443.350 kb on + strand, within QEN71_RS41810 at 443.351 kb on - strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.412 kb on + strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.413 kb on - strand, within QEN71_RS41810 at 443.478 kb on + strand, within QEN71_RS41810 at 443.479 kb on - strand, within QEN71_RS41810 at 443.626 kb on + strand, within QEN71_RS41810 at 443.672 kb on + strand, within QEN71_RS41810 at 443.672 kb on + strand, within QEN71_RS41810 at 443.725 kb on + strand at 443.725 kb on + strand at 443.725 kb on + strand at 443.725 kb on + strand at 443.726 kb on - strand at 443.802 kb on + strand at 443.802 kb on + strand at 443.803 kb on - strand at 443.803 kb on - strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.949 kb on + strand at 443.950 kb on - strand at 444.005 kb on + strand, within QEN71_RS41815 at 444.005 kb on + strand, within QEN71_RS41815 at 444.005 kb on + strand, within QEN71_RS41815 at 444.006 kb on - strand, within QEN71_RS41815 at 444.015 kb on - strand, within QEN71_RS41815 at 444.041 kb on + strand, within QEN71_RS41815 at 444.041 kb on + strand, within QEN71_RS41815 at 444.041 kb on + strand, within QEN71_RS41815 at 444.042 kb on - strand, within QEN71_RS41815 at 444.078 kb on + strand, within QEN71_RS41815 at 444.078 kb on + strand, within QEN71_RS41815 at 444.079 kb on - strand, within QEN71_RS41815 at 444.079 kb on - strand, within QEN71_RS41815 at 444.261 kb on + strand, within QEN71_RS41815 at 444.261 kb on + strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.262 kb on - strand, within QEN71_RS41815 at 444.274 kb on - strand, within QEN71_RS41815 at 444.287 kb on + strand, within QEN71_RS41815 at 444.344 kb on + strand, within QEN71_RS41815 at 444.345 kb on - strand, within QEN71_RS41815 at 444.566 kb on + strand, within QEN71_RS41815 at 444.566 kb on + strand, within QEN71_RS41815 at 444.566 kb on + strand, within QEN71_RS41815 at 444.567 kb on - strand, within QEN71_RS41815 at 444.567 kb on - strand, within QEN71_RS41815 at 444.572 kb on + strand, within QEN71_RS41815 at 444.681 kb on + strand, within QEN71_RS41815 at 444.703 kb on - strand, within QEN71_RS41815 at 444.803 kb on + strand, within QEN71_RS41815 at 444.803 kb on + strand, within QEN71_RS41815 at 444.833 kb on + strand, within QEN71_RS41815 at 444.833 kb on + strand, within QEN71_RS41815 at 444.833 kb on + strand, within QEN71_RS41815 at 444.833 kb on + strand, within QEN71_RS41815 at 444.833 kb on + strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.834 kb on - strand, within QEN71_RS41815 at 444.835 kb on + strand, within QEN71_RS41815 at 444.993 kb on - strand, within QEN71_RS41815 at 444.993 kb on - strand, within QEN71_RS41815 at 444.993 kb on - strand, within QEN71_RS41815 at 444.993 kb on - strand, within QEN71_RS41815 at 445.184 kb on + strand, within QEN71_RS41815 at 445.184 kb on + strand, within QEN71_RS41815 at 445.184 kb on + strand, within QEN71_RS41815 at 445.185 kb on - strand, within QEN71_RS41815 at 445.185 kb on - strand, within QEN71_RS41815 at 445.185 kb on - strand, within QEN71_RS41815 at 445.185 kb on - strand, within QEN71_RS41815 at 445.185 kb on - strand, within QEN71_RS41815 at 445.229 kb on + strand, within QEN71_RS41815 at 445.263 kb on - strand, within QEN71_RS41815 at 445.263 kb on - strand, within QEN71_RS41815 at 445.329 kb on + strand, within QEN71_RS41815 at 445.330 kb on - strand, within QEN71_RS41815 at 445.330 kb on - strand, within QEN71_RS41815 at 445.330 kb on - strand, within QEN71_RS41815 at 445.457 kb on + strand, within QEN71_RS41815 at 445.457 kb on + strand, within QEN71_RS41815 at 445.457 kb on + strand, within QEN71_RS41815 at 445.458 kb on - strand, within QEN71_RS41815 at 445.565 kb on + strand, within QEN71_RS41815 at 445.565 kb on + strand, within QEN71_RS41815 at 445.566 kb on - strand, within QEN71_RS41815 at 445.585 kb on - strand, within QEN71_RS41815 at 445.599 kb on + strand, within QEN71_RS41815 at 445.599 kb on + strand, within QEN71_RS41815 at 445.599 kb on + strand, within QEN71_RS41815 at 445.756 kb on + strand, within QEN71_RS41815 at 445.756 kb on + strand, within QEN71_RS41815 at 445.757 kb on - strand, within QEN71_RS41815 at 445.757 kb on - strand, within QEN71_RS41815 at 445.757 kb on - strand, within QEN71_RS41815 at 445.757 kb on - strand, within QEN71_RS41815 at 445.880 kb on + strand, within QEN71_RS41815 at 445.896 kb on - strand at 445.896 kb on - strand at 445.899 kb on + strand at 445.899 kb on + strand at 445.899 kb on + strand at 445.900 kb on - strand at 445.900 kb on - strand at 445.912 kb on + strand at 445.912 kb on + strand at 445.913 kb on - strand at 445.913 kb on - strand at 445.913 kb on - strand at 445.913 kb on - strand at 445.913 kb on - strand at 445.935 kb on + strand at 445.935 kb on + strand at 445.985 kb on - strand at 446.049 kb on - strand at 446.052 kb on - strand at 446.052 kb on - strand at 446.052 kb on - strand at 446.052 kb on - strand at 446.058 kb on - strand at 446.088 kb on + strand at 446.164 kb on - strand at 446.223 kb on + strand at 446.362 kb on + strand at 446.362 kb on + strand at 446.364 kb on + strand at 446.364 kb on + strand at 446.365 kb on - strand at 446.498 kb on - strand, within QEN71_RS41820 at 446.544 kb on - strand, within QEN71_RS41820 at 446.544 kb on - strand, within QEN71_RS41820 at 446.681 kb on - strand, within QEN71_RS41820 at 446.750 kb on - strand, within QEN71_RS41820 at 446.750 kb on - strand, within QEN71_RS41820 at 446.789 kb on + strand, within QEN71_RS41820 at 446.929 kb on + strand, within QEN71_RS41820 at 446.929 kb on + strand, within QEN71_RS41820 at 446.930 kb on - strand, within QEN71_RS41820 at 446.939 kb on + strand, within QEN71_RS41820 at 446.939 kb on + strand, within QEN71_RS41820 at 446.940 kb on - strand, within QEN71_RS41820 at 446.964 kb on - strand, within QEN71_RS41820 at 446.964 kb on - strand, within QEN71_RS41820 at 447.021 kb on + strand, within QEN71_RS41820
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM remove 442,915 + +0.1 442,915 + +1.7 442,915 + -0.8 442,915 + +0.4 442,916 - +0.5 442,916 - +0.9 442,933 - -0.1 442,979 + +1.7 442,979 + -0.2 442,979 + +0.2 442,980 - -0.3 442,980 - +0.2 442,980 - +0.2 443,101 + QEN71_RS41810 0.22 -0.1 443,101 + QEN71_RS41810 0.22 +0.1 443,101 + QEN71_RS41810 0.22 +0.9 443,101 + QEN71_RS41810 0.22 +1.1 443,101 + QEN71_RS41810 0.22 +0.5 443,101 + QEN71_RS41810 0.22 +0.5 443,101 + QEN71_RS41810 0.22 -0.7 443,102 - QEN71_RS41810 0.23 -0.1 443,102 - QEN71_RS41810 0.23 -0.7 443,102 - QEN71_RS41810 0.23 -0.3 443,102 - QEN71_RS41810 0.23 -0.6 443,102 - QEN71_RS41810 0.23 -0.2 443,102 - QEN71_RS41810 0.23 -0.5 443,102 - QEN71_RS41810 0.23 +0.2 443,102 - QEN71_RS41810 0.23 +0.4 443,102 - QEN71_RS41810 0.23 -1.5 443,113 + QEN71_RS41810 0.24 -0.3 443,113 + QEN71_RS41810 0.24 +0.6 443,114 - QEN71_RS41810 0.24 +0.4 443,167 + QEN71_RS41810 0.30 +0.4 443,168 - QEN71_RS41810 0.30 +0.8 443,168 - QEN71_RS41810 0.30 -1.2 443,301 + QEN71_RS41810 0.46 +0.7 443,328 + QEN71_RS41810 0.49 -0.5 443,341 + QEN71_RS41810 0.51 -0.9 443,341 + QEN71_RS41810 0.51 +0.2 443,341 + QEN71_RS41810 0.51 +0.8 443,341 + QEN71_RS41810 0.51 -0.5 443,342 - QEN71_RS41810 0.51 -0.2 443,342 - QEN71_RS41810 0.51 +1.1 443,342 - QEN71_RS41810 0.51 +0.5 443,342 - QEN71_RS41810 0.51 +1.8 443,350 + QEN71_RS41810 0.52 +0.0 443,351 - QEN71_RS41810 0.52 -1.5 443,412 + QEN71_RS41810 0.59 +0.6 443,412 + QEN71_RS41810 0.59 +1.0 443,412 + QEN71_RS41810 0.59 +0.2 443,412 + QEN71_RS41810 0.59 +0.4 443,412 + QEN71_RS41810 0.59 -0.5 443,412 + QEN71_RS41810 0.59 -0.9 443,412 + QEN71_RS41810 0.59 -0.9 443,413 - QEN71_RS41810 0.59 -0.2 443,413 - QEN71_RS41810 0.59 -0.4 443,413 - QEN71_RS41810 0.59 +0.9 443,413 - QEN71_RS41810 0.59 +0.0 443,413 - QEN71_RS41810 0.59 +1.5 443,478 + QEN71_RS41810 0.67 +1.7 443,479 - QEN71_RS41810 0.67 +0.3 443,626 + QEN71_RS41810 0.84 +0.2 443,672 + QEN71_RS41810 0.90 -0.6 443,672 + QEN71_RS41810 0.90 -0.6 443,725 + -0.2 443,725 + -0.1 443,725 + -0.4 443,725 + -0.3 443,726 - -0.8 443,802 + -0.1 443,802 + -0.8 443,803 - -0.3 443,803 - +0.2 443,949 + -1.3 443,949 + -0.5 443,949 + +0.5 443,949 + -0.3 443,949 + +1.2 443,950 - -0.5 444,005 + QEN71_RS41815 0.11 +0.1 444,005 + QEN71_RS41815 0.11 -0.3 444,005 + QEN71_RS41815 0.11 -1.0 444,006 - QEN71_RS41815 0.11 +1.1 444,015 - QEN71_RS41815 0.11 -0.2 444,041 + QEN71_RS41815 0.12 -0.4 444,041 + QEN71_RS41815 0.12 +1.3 444,041 + QEN71_RS41815 0.12 +0.1 444,042 - QEN71_RS41815 0.12 +0.2 444,078 + QEN71_RS41815 0.14 -0.3 444,078 + QEN71_RS41815 0.14 -1.0 444,079 - QEN71_RS41815 0.14 -0.6 444,079 - QEN71_RS41815 0.14 -0.0 444,261 + QEN71_RS41815 0.21 -0.0 444,261 + QEN71_RS41815 0.21 -0.7 444,262 - QEN71_RS41815 0.21 +1.3 444,262 - QEN71_RS41815 0.21 -0.6 444,262 - QEN71_RS41815 0.21 -2.1 444,262 - QEN71_RS41815 0.21 +0.9 444,274 - QEN71_RS41815 0.22 +0.7 444,287 + QEN71_RS41815 0.22 +3.2 444,344 + QEN71_RS41815 0.25 +1.6 444,345 - QEN71_RS41815 0.25 -0.6 444,566 + QEN71_RS41815 0.34 +0.9 444,566 + QEN71_RS41815 0.34 +0.2 444,566 + QEN71_RS41815 0.34 +0.5 444,567 - QEN71_RS41815 0.34 +0.8 444,567 - QEN71_RS41815 0.34 +1.1 444,572 + QEN71_RS41815 0.34 -1.1 444,681 + QEN71_RS41815 0.39 +0.9 444,703 - QEN71_RS41815 0.40 -0.9 444,803 + QEN71_RS41815 0.44 +0.1 444,803 + QEN71_RS41815 0.44 +0.0 444,833 + QEN71_RS41815 0.45 +0.1 444,833 + QEN71_RS41815 0.45 +0.3 444,833 + QEN71_RS41815 0.45 +0.6 444,833 + QEN71_RS41815 0.45 +0.1 444,833 + QEN71_RS41815 0.45 +0.6 444,834 - QEN71_RS41815 0.45 +2.1 444,834 - QEN71_RS41815 0.45 +1.2 444,834 - QEN71_RS41815 0.45 -0.6 444,834 - QEN71_RS41815 0.45 +0.1 444,834 - QEN71_RS41815 0.45 -0.5 444,834 - QEN71_RS41815 0.45 +0.2 444,834 - QEN71_RS41815 0.45 +2.1 444,834 - QEN71_RS41815 0.45 +0.2 444,835 + QEN71_RS41815 0.45 +0.7 444,993 - QEN71_RS41815 0.52 +1.4 444,993 - QEN71_RS41815 0.52 +0.9 444,993 - QEN71_RS41815 0.52 -0.9 444,993 - QEN71_RS41815 0.52 +0.1 445,184 + QEN71_RS41815 0.60 +2.1 445,184 + QEN71_RS41815 0.60 +0.4 445,184 + QEN71_RS41815 0.60 -1.9 445,185 - QEN71_RS41815 0.60 +0.1 445,185 - QEN71_RS41815 0.60 -1.6 445,185 - QEN71_RS41815 0.60 +0.0 445,185 - QEN71_RS41815 0.60 +0.1 445,185 - QEN71_RS41815 0.60 +1.0 445,229 + QEN71_RS41815 0.62 -0.3 445,263 - QEN71_RS41815 0.63 +0.3 445,263 - QEN71_RS41815 0.63 +0.7 445,329 + QEN71_RS41815 0.66 +0.3 445,330 - QEN71_RS41815 0.66 -0.2 445,330 - QEN71_RS41815 0.66 -0.3 445,330 - QEN71_RS41815 0.66 -0.2 445,457 + QEN71_RS41815 0.72 -0.6 445,457 + QEN71_RS41815 0.72 -0.3 445,457 + QEN71_RS41815 0.72 +0.6 445,458 - QEN71_RS41815 0.72 +0.3 445,565 + QEN71_RS41815 0.76 +1.0 445,565 + QEN71_RS41815 0.76 -0.3 445,566 - QEN71_RS41815 0.76 -1.0 445,585 - QEN71_RS41815 0.77 -0.8 445,599 + QEN71_RS41815 0.78 +1.3 445,599 + QEN71_RS41815 0.78 +1.1 445,599 + QEN71_RS41815 0.78 -0.0 445,756 + QEN71_RS41815 0.84 -0.7 445,756 + QEN71_RS41815 0.84 +0.5 445,757 - QEN71_RS41815 0.84 -2.9 445,757 - QEN71_RS41815 0.84 -0.9 445,757 - QEN71_RS41815 0.84 +0.3 445,757 - QEN71_RS41815 0.84 +2.1 445,880 + QEN71_RS41815 0.89 -0.1 445,896 - +1.8 445,896 - -1.0 445,899 + -0.3 445,899 + +0.6 445,899 + +1.0 445,900 - +2.2 445,900 - -0.9 445,912 + +0.4 445,912 + +2.1 445,913 - -0.4 445,913 - -0.3 445,913 - +0.4 445,913 - +0.0 445,913 - +1.7 445,935 + +0.5 445,935 + -1.6 445,985 - +0.7 446,049 - +0.3 446,052 - -0.8 446,052 - -0.5 446,052 - +2.5 446,052 - -0.3 446,058 - +0.5 446,088 + -1.0 446,164 - +0.9 446,223 + -0.5 446,362 + -0.2 446,362 + +0.2 446,364 + -0.1 446,364 + -0.3 446,365 - -0.1 446,498 - QEN71_RS41820 0.18 +0.6 446,544 - QEN71_RS41820 0.24 -1.7 446,544 - QEN71_RS41820 0.24 -1.1 446,681 - QEN71_RS41820 0.41 +0.1 446,750 - QEN71_RS41820 0.50 +0.2 446,750 - QEN71_RS41820 0.50 +0.2 446,789 + QEN71_RS41820 0.55 +0.6 446,929 + QEN71_RS41820 0.72 +0.2 446,929 + QEN71_RS41820 0.72 -0.3 446,930 - QEN71_RS41820 0.72 +0.5 446,939 + QEN71_RS41820 0.73 -0.4 446,939 + QEN71_RS41820 0.73 -0.1 446,940 - QEN71_RS41820 0.74 -0.8 446,964 - QEN71_RS41820 0.77 +0.4 446,964 - QEN71_RS41820 0.77 -0.6 447,021 + QEN71_RS41820 0.84 +0.3
Or see this region's nucleotide sequence