Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34930

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34925 and QEN71_RS34930 are separated by 24 nucleotidesQEN71_RS34930 and QEN71_RS34935 are separated by 131 nucleotides QEN71_RS34925: QEN71_RS34925 - DMT family transporter, at 1,171,337 to 1,172,278 _RS34925 QEN71_RS34930: QEN71_RS34930 - LysE family transporter, at 1,172,303 to 1,172,914 _RS34930 QEN71_RS34935: QEN71_RS34935 - transcriptional regulator GcvA, at 1,173,046 to 1,173,954 _RS34935 Position (kb) 1172 1173Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1171.421 kb on + strandat 1171.422 kb on - strandat 1171.422 kb on - strandat 1171.476 kb on + strand, within QEN71_RS34925at 1171.476 kb on + strand, within QEN71_RS34925at 1171.476 kb on + strand, within QEN71_RS34925at 1171.477 kb on - strand, within QEN71_RS34925at 1171.477 kb on - strand, within QEN71_RS34925at 1171.477 kb on - strand, within QEN71_RS34925at 1171.530 kb on - strand, within QEN71_RS34925at 1171.567 kb on - strand, within QEN71_RS34925at 1171.567 kb on - strand, within QEN71_RS34925at 1171.615 kb on + strand, within QEN71_RS34925at 1171.615 kb on + strand, within QEN71_RS34925at 1171.640 kb on + strand, within QEN71_RS34925at 1171.661 kb on + strand, within QEN71_RS34925at 1171.661 kb on + strand, within QEN71_RS34925at 1171.662 kb on - strand, within QEN71_RS34925at 1171.696 kb on - strand, within QEN71_RS34925at 1171.725 kb on + strand, within QEN71_RS34925at 1171.725 kb on + strand, within QEN71_RS34925at 1171.726 kb on - strand, within QEN71_RS34925at 1171.728 kb on + strand, within QEN71_RS34925at 1171.728 kb on + strand, within QEN71_RS34925at 1171.728 kb on + strand, within QEN71_RS34925at 1171.919 kb on - strand, within QEN71_RS34925at 1172.147 kb on + strand, within QEN71_RS34925at 1172.147 kb on + strand, within QEN71_RS34925at 1172.147 kb on + strand, within QEN71_RS34925at 1172.179 kb on + strand, within QEN71_RS34925at 1172.451 kb on + strand, within QEN71_RS34930at 1172.451 kb on + strand, within QEN71_RS34930at 1172.452 kb on - strand, within QEN71_RS34930at 1172.516 kb on + strand, within QEN71_RS34930at 1172.517 kb on - strand, within QEN71_RS34930at 1172.517 kb on - strand, within QEN71_RS34930at 1172.661 kb on + strand, within QEN71_RS34930at 1172.662 kb on - strand, within QEN71_RS34930at 1172.662 kb on - strand, within QEN71_RS34930at 1172.662 kb on - strand, within QEN71_RS34930at 1172.670 kb on + strand, within QEN71_RS34930at 1172.671 kb on - strand, within QEN71_RS34930at 1172.671 kb on - strand, within QEN71_RS34930at 1172.753 kb on + strand, within QEN71_RS34930at 1172.803 kb on + strand, within QEN71_RS34930at 1172.803 kb on + strand, within QEN71_RS34930at 1172.803 kb on + strand, within QEN71_RS34930at 1172.804 kb on - strand, within QEN71_RS34930at 1172.804 kb on - strand, within QEN71_RS34930at 1172.814 kb on + strand, within QEN71_RS34930at 1172.814 kb on + strand, within QEN71_RS34930at 1172.814 kb on + strand, within QEN71_RS34930at 1172.869 kb on + strandat 1172.869 kb on + strandat 1172.870 kb on - strandat 1172.870 kb on - strandat 1172.902 kb on + strandat 1172.903 kb on - strandat 1172.903 kb on - strandat 1172.918 kb on + strandat 1172.930 kb on + strandat 1172.931 kb on - strandat 1173.013 kb on + strandat 1173.045 kb on + strandat 1173.045 kb on + strandat 1173.045 kb on + strandat 1173.046 kb on - strandat 1173.046 kb on - strandat 1173.046 kb on - strandat 1173.120 kb on - strandat 1173.350 kb on + strand, within QEN71_RS34935at 1173.388 kb on - strand, within QEN71_RS34935at 1173.474 kb on - strand, within QEN71_RS34935at 1173.474 kb on - strand, within QEN71_RS34935at 1173.499 kb on + strand, within QEN71_RS34935at 1173.500 kb on - strand, within QEN71_RS34935at 1173.524 kb on + strand, within QEN71_RS34935at 1173.678 kb on + strand, within QEN71_RS34935at 1173.706 kb on + strand, within QEN71_RS34935at 1173.707 kb on - strand, within QEN71_RS34935at 1173.707 kb on - strand, within QEN71_RS34935at 1173.707 kb on - strand, within QEN71_RS34935

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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1,171,421 + +0.5
1,171,422 - -0.2
1,171,422 - -0.2
1,171,476 + QEN71_RS34925 0.15 -0.0
1,171,476 + QEN71_RS34925 0.15 -0.2
1,171,476 + QEN71_RS34925 0.15 -1.0
1,171,477 - QEN71_RS34925 0.15 +0.5
1,171,477 - QEN71_RS34925 0.15 +0.8
1,171,477 - QEN71_RS34925 0.15 +0.5
1,171,530 - QEN71_RS34925 0.20 -0.8
1,171,567 - QEN71_RS34925 0.24 +0.8
1,171,567 - QEN71_RS34925 0.24 +2.1
1,171,615 + QEN71_RS34925 0.30 -1.8
1,171,615 + QEN71_RS34925 0.30 -0.5
1,171,640 + QEN71_RS34925 0.32 +0.3
1,171,661 + QEN71_RS34925 0.34 +1.2
1,171,661 + QEN71_RS34925 0.34 -0.3
1,171,662 - QEN71_RS34925 0.35 -0.5
1,171,696 - QEN71_RS34925 0.38 -0.1
1,171,725 + QEN71_RS34925 0.41 -1.4
1,171,725 + QEN71_RS34925 0.41 +0.9
1,171,726 - QEN71_RS34925 0.41 +0.4
1,171,728 + QEN71_RS34925 0.42 -0.8
1,171,728 + QEN71_RS34925 0.42 +0.4
1,171,728 + QEN71_RS34925 0.42 +0.8
1,171,919 - QEN71_RS34925 0.62 +1.0
1,172,147 + QEN71_RS34925 0.86 -0.3
1,172,147 + QEN71_RS34925 0.86 -0.1
1,172,147 + QEN71_RS34925 0.86 +1.3
1,172,179 + QEN71_RS34925 0.89 -0.2
1,172,451 + QEN71_RS34930 0.24 -1.1
1,172,451 + QEN71_RS34930 0.24 -0.2
1,172,452 - QEN71_RS34930 0.24 -1.2
1,172,516 + QEN71_RS34930 0.35 +1.5
1,172,517 - QEN71_RS34930 0.35 +0.3
1,172,517 - QEN71_RS34930 0.35 -0.4
1,172,661 + QEN71_RS34930 0.58 +0.3
1,172,662 - QEN71_RS34930 0.59 +0.5
1,172,662 - QEN71_RS34930 0.59 -0.5
1,172,662 - QEN71_RS34930 0.59 +0.8
1,172,670 + QEN71_RS34930 0.60 -1.2
1,172,671 - QEN71_RS34930 0.60 -0.4
1,172,671 - QEN71_RS34930 0.60 -0.1
1,172,753 + QEN71_RS34930 0.74 -0.5
1,172,803 + QEN71_RS34930 0.82 -0.0
1,172,803 + QEN71_RS34930 0.82 -0.3
1,172,803 + QEN71_RS34930 0.82 +0.4
1,172,804 - QEN71_RS34930 0.82 -0.1
1,172,804 - QEN71_RS34930 0.82 -0.7
1,172,814 + QEN71_RS34930 0.83 +0.3
1,172,814 + QEN71_RS34930 0.83 +0.0
1,172,814 + QEN71_RS34930 0.83 -3.1
1,172,869 + -1.4
1,172,869 + -0.5
1,172,870 - +1.3
1,172,870 - -1.3
1,172,902 + -0.2
1,172,903 - +0.0
1,172,903 - +0.8
1,172,918 + +1.4
1,172,930 + -0.2
1,172,931 - -0.9
1,173,013 + +0.1
1,173,045 + -0.5
1,173,045 + -0.1
1,173,045 + -0.0
1,173,046 - +1.4
1,173,046 - -1.5
1,173,046 - -0.5
1,173,120 - +0.3
1,173,350 + QEN71_RS34935 0.33 -0.1
1,173,388 - QEN71_RS34935 0.38 +1.0
1,173,474 - QEN71_RS34935 0.47 +0.6
1,173,474 - QEN71_RS34935 0.47 -1.6
1,173,499 + QEN71_RS34935 0.50 -0.6
1,173,500 - QEN71_RS34935 0.50 -0.5
1,173,524 + QEN71_RS34935 0.53 -0.4
1,173,678 + QEN71_RS34935 0.70 +1.4
1,173,706 + QEN71_RS34935 0.73 +0.1
1,173,707 - QEN71_RS34935 0.73 -0.2
1,173,707 - QEN71_RS34935 0.73 -1.2
1,173,707 - QEN71_RS34935 0.73 -0.2

Or see this region's nucleotide sequence