Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29900

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29890 and QEN71_RS29895 are separated by 101 nucleotidesQEN71_RS29895 and QEN71_RS29900 are separated by 8 nucleotidesQEN71_RS29900 and QEN71_RS29905 overlap by 4 nucleotidesQEN71_RS29905 and QEN71_RS29910 are separated by 346 nucleotides QEN71_RS29890: QEN71_RS29890 - RcnB family protein, at 52,670 to 53,074 _RS29890 QEN71_RS29895: QEN71_RS29895 - hypothetical protein, at 53,176 to 53,838 _RS29895 QEN71_RS29900: QEN71_RS29900 - glycine zipper family protein, at 53,847 to 54,776 _RS29900 QEN71_RS29905: QEN71_RS29905 - PAAR domain-containing protein, at 54,773 to 55,324 _RS29905 QEN71_RS29910: QEN71_RS29910 - hypothetical protein, at 55,671 to 56,195 _RS29910 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 53.002 kb on - strand, within QEN71_RS29890at 53.061 kb on - strandat 53.061 kb on - strandat 53.061 kb on - strandat 53.074 kb on + strandat 53.091 kb on - strandat 53.134 kb on + strandat 53.135 kb on - strandat 53.144 kb on + strandat 53.393 kb on + strand, within QEN71_RS29895at 53.467 kb on + strand, within QEN71_RS29895at 53.924 kb on + strandat 53.925 kb on - strandat 54.078 kb on + strand, within QEN71_RS29900at 54.079 kb on - strand, within QEN71_RS29900at 54.124 kb on + strand, within QEN71_RS29900at 54.124 kb on + strand, within QEN71_RS29900at 54.125 kb on - strand, within QEN71_RS29900at 54.167 kb on - strand, within QEN71_RS29900at 54.167 kb on - strand, within QEN71_RS29900at 54.211 kb on - strand, within QEN71_RS29900at 54.243 kb on + strand, within QEN71_RS29900at 54.244 kb on - strand, within QEN71_RS29900at 54.244 kb on - strand, within QEN71_RS29900at 54.249 kb on + strand, within QEN71_RS29900at 54.249 kb on + strand, within QEN71_RS29900at 54.250 kb on - strand, within QEN71_RS29900at 54.276 kb on - strand, within QEN71_RS29900at 54.284 kb on + strand, within QEN71_RS29900at 54.331 kb on + strand, within QEN71_RS29900at 54.405 kb on + strand, within QEN71_RS29900at 54.406 kb on - strand, within QEN71_RS29900at 54.406 kb on - strand, within QEN71_RS29900at 54.406 kb on - strand, within QEN71_RS29900at 54.409 kb on + strand, within QEN71_RS29900at 54.410 kb on - strand, within QEN71_RS29900at 54.470 kb on - strand, within QEN71_RS29900at 54.631 kb on + strand, within QEN71_RS29900at 54.632 kb on - strand, within QEN71_RS29900at 54.760 kb on + strandat 54.761 kb on - strandat 54.766 kb on + strandat 54.766 kb on + strandat 54.767 kb on - strandat 54.767 kb on - strandat 54.841 kb on - strand, within QEN71_RS29905at 54.841 kb on - strand, within QEN71_RS29905at 54.882 kb on + strand, within QEN71_RS29905at 54.901 kb on + strand, within QEN71_RS29905at 54.901 kb on + strand, within QEN71_RS29905at 55.112 kb on - strand, within QEN71_RS29905at 55.142 kb on - strand, within QEN71_RS29905at 55.229 kb on + strand, within QEN71_RS29905at 55.271 kb on + strandat 55.326 kb on + strandat 55.497 kb on + strandat 55.544 kb on + strandat 55.609 kb on - strandat 55.729 kb on - strand, within QEN71_RS29910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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53,002 - QEN71_RS29890 0.82 -0.3
53,061 - -2.4
53,061 - +0.5
53,061 - -1.5
53,074 + -2.1
53,091 - +0.1
53,134 + -0.7
53,135 - +0.8
53,144 + -0.4
53,393 + QEN71_RS29895 0.33 -0.9
53,467 + QEN71_RS29895 0.44 -0.1
53,924 + +1.9
53,925 - -2.0
54,078 + QEN71_RS29900 0.25 +0.3
54,079 - QEN71_RS29900 0.25 +1.9
54,124 + QEN71_RS29900 0.30 +0.6
54,124 + QEN71_RS29900 0.30 -0.1
54,125 - QEN71_RS29900 0.30 -0.2
54,167 - QEN71_RS29900 0.34 +0.7
54,167 - QEN71_RS29900 0.34 -0.1
54,211 - QEN71_RS29900 0.39 -1.2
54,243 + QEN71_RS29900 0.43 +0.3
54,244 - QEN71_RS29900 0.43 +1.0
54,244 - QEN71_RS29900 0.43 +0.5
54,249 + QEN71_RS29900 0.43 -0.5
54,249 + QEN71_RS29900 0.43 -0.9
54,250 - QEN71_RS29900 0.43 -0.5
54,276 - QEN71_RS29900 0.46 -0.0
54,284 + QEN71_RS29900 0.47 +1.3
54,331 + QEN71_RS29900 0.52 -0.1
54,405 + QEN71_RS29900 0.60 +0.4
54,406 - QEN71_RS29900 0.60 +0.6
54,406 - QEN71_RS29900 0.60 -0.4
54,406 - QEN71_RS29900 0.60 +0.6
54,409 + QEN71_RS29900 0.60 +0.0
54,410 - QEN71_RS29900 0.61 -1.1
54,470 - QEN71_RS29900 0.67 -0.8
54,631 + QEN71_RS29900 0.84 +0.2
54,632 - QEN71_RS29900 0.84 -0.6
54,760 + -0.4
54,761 - -1.7
54,766 + +0.6
54,766 + +1.4
54,767 - +0.8
54,767 - -1.5
54,841 - QEN71_RS29905 0.12 -0.1
54,841 - QEN71_RS29905 0.12 +0.3
54,882 + QEN71_RS29905 0.20 -0.4
54,901 + QEN71_RS29905 0.23 +0.3
54,901 + QEN71_RS29905 0.23 +1.2
55,112 - QEN71_RS29905 0.61 +0.1
55,142 - QEN71_RS29905 0.67 +1.3
55,229 + QEN71_RS29905 0.83 +0.0
55,271 + +0.9
55,326 + +0.1
55,497 + -0.3
55,544 + +0.3
55,609 - +0.5
55,729 - QEN71_RS29910 0.11 +0.1

Or see this region's nucleotide sequence