Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21025

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21020 and QEN71_RS21025 are separated by 305 nucleotidesQEN71_RS21025 and QEN71_RS21030 are separated by 141 nucleotides QEN71_RS21020: QEN71_RS21020 - FAD-dependent oxidoreductase, at 4,659,032 to 4,660,687 _RS21020 QEN71_RS21025: QEN71_RS21025 - epoxide hydrolase, at 4,660,993 to 4,662,264 _RS21025 QEN71_RS21030: QEN71_RS21030 - trifunctional serine/threonine-protein kinase/ATP-binding protein/sensor histidine kinase, at 4,662,406 to 4,667,502 _RS21030 Position (kb) 4660 4661 4662 4663Strain fitness (log2 ratio) -2 -1 0 1 2at 4659.999 kb on + strand, within QEN71_RS21020at 4659.999 kb on + strand, within QEN71_RS21020at 4660.000 kb on - strand, within QEN71_RS21020at 4660.000 kb on - strand, within QEN71_RS21020at 4660.179 kb on + strand, within QEN71_RS21020at 4660.180 kb on - strand, within QEN71_RS21020at 4660.180 kb on - strand, within QEN71_RS21020at 4660.350 kb on - strand, within QEN71_RS21020at 4660.756 kb on + strandat 4660.756 kb on + strandat 4660.756 kb on + strandat 4660.756 kb on + strandat 4660.757 kb on - strandat 4660.757 kb on - strandat 4660.762 kb on - strandat 4660.780 kb on - strandat 4660.801 kb on + strandat 4660.801 kb on + strandat 4660.802 kb on - strandat 4660.840 kb on - strandat 4660.840 kb on - strandat 4660.843 kb on + strandat 4660.866 kb on - strandat 4660.866 kb on - strandat 4660.866 kb on - strandat 4660.866 kb on - strandat 4660.881 kb on - strandat 4660.911 kb on - strandat 4661.066 kb on + strandat 4661.066 kb on + strandat 4661.083 kb on + strandat 4661.118 kb on + strandat 4661.127 kb on + strand, within QEN71_RS21025at 4661.153 kb on + strand, within QEN71_RS21025at 4661.173 kb on - strand, within QEN71_RS21025at 4661.266 kb on + strand, within QEN71_RS21025at 4661.312 kb on - strand, within QEN71_RS21025at 4661.312 kb on - strand, within QEN71_RS21025at 4661.792 kb on - strand, within QEN71_RS21025at 4661.911 kb on + strand, within QEN71_RS21025at 4661.911 kb on + strand, within QEN71_RS21025at 4661.911 kb on + strand, within QEN71_RS21025at 4661.935 kb on + strand, within QEN71_RS21025at 4661.935 kb on + strand, within QEN71_RS21025at 4661.936 kb on - strand, within QEN71_RS21025at 4661.998 kb on + strand, within QEN71_RS21025at 4662.038 kb on - strand, within QEN71_RS21025at 4662.075 kb on + strand, within QEN71_RS21025at 4662.166 kb on + strandat 4662.329 kb on - strandat 4662.330 kb on - strandat 4662.340 kb on + strandat 4662.341 kb on - strandat 4662.344 kb on + strandat 4662.345 kb on - strandat 4662.345 kb on - strandat 4662.356 kb on + strandat 4662.373 kb on + strandat 4662.373 kb on + strandat 4662.374 kb on - strandat 4662.374 kb on - strandat 4662.379 kb on + strandat 4662.379 kb on + strandat 4662.380 kb on - strandat 4662.380 kb on - strandat 4662.380 kb on - strandat 4662.380 kb on - strandat 4662.706 kb on - strandat 4662.814 kb on + strandat 4662.814 kb on + strandat 4662.815 kb on - strandat 4662.907 kb on + strandat 4662.907 kb on + strandat 4662.907 kb on + strandat 4662.907 kb on + strandat 4662.907 kb on + strandat 4662.907 kb on + strandat 4662.908 kb on - strandat 4662.908 kb on - strandat 4662.908 kb on - strandat 4662.908 kb on - strandat 4662.988 kb on + strand, within QEN71_RS21030

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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4,659,999 + QEN71_RS21020 0.58 -1.1
4,659,999 + QEN71_RS21020 0.58 -1.2
4,660,000 - QEN71_RS21020 0.58 -0.2
4,660,000 - QEN71_RS21020 0.58 -1.3
4,660,179 + QEN71_RS21020 0.69 -1.5
4,660,180 - QEN71_RS21020 0.69 +1.1
4,660,180 - QEN71_RS21020 0.69 -0.6
4,660,350 - QEN71_RS21020 0.80 +0.2
4,660,756 + -0.9
4,660,756 + -0.0
4,660,756 + -0.8
4,660,756 + -1.3
4,660,757 - -0.4
4,660,757 - -1.4
4,660,762 - -1.3
4,660,780 - -0.5
4,660,801 + -0.2
4,660,801 + +0.0
4,660,802 - +0.1
4,660,840 - -0.1
4,660,840 - +0.7
4,660,843 + +0.4
4,660,866 - -0.2
4,660,866 - -2.0
4,660,866 - -0.1
4,660,866 - -0.1
4,660,881 - -0.9
4,660,911 - -0.3
4,661,066 + -0.9
4,661,066 + -0.2
4,661,083 + -2.0
4,661,118 + -0.5
4,661,127 + QEN71_RS21025 0.11 +0.2
4,661,153 + QEN71_RS21025 0.13 -0.4
4,661,173 - QEN71_RS21025 0.14 -0.3
4,661,266 + QEN71_RS21025 0.21 -1.4
4,661,312 - QEN71_RS21025 0.25 -1.8
4,661,312 - QEN71_RS21025 0.25 -0.0
4,661,792 - QEN71_RS21025 0.63 -0.0
4,661,911 + QEN71_RS21025 0.72 -0.1
4,661,911 + QEN71_RS21025 0.72 +1.0
4,661,911 + QEN71_RS21025 0.72 -2.0
4,661,935 + QEN71_RS21025 0.74 -0.8
4,661,935 + QEN71_RS21025 0.74 +1.1
4,661,936 - QEN71_RS21025 0.74 -0.3
4,661,998 + QEN71_RS21025 0.79 -1.5
4,662,038 - QEN71_RS21025 0.82 +2.3
4,662,075 + QEN71_RS21025 0.85 +0.5
4,662,166 + -0.6
4,662,329 - -0.7
4,662,330 - +0.6
4,662,340 + -0.4
4,662,341 - +0.1
4,662,344 + -0.9
4,662,345 - +0.4
4,662,345 - -1.6
4,662,356 + -0.1
4,662,373 + +0.3
4,662,373 + +1.3
4,662,374 - +0.5
4,662,374 - +2.5
4,662,379 + -0.2
4,662,379 + +0.3
4,662,380 - -1.5
4,662,380 - -2.0
4,662,380 - +0.1
4,662,380 - +0.3
4,662,706 - +0.1
4,662,814 + -0.1
4,662,814 + -0.3
4,662,815 - -2.1
4,662,907 + -0.1
4,662,907 + +0.4
4,662,907 + -1.0
4,662,907 + +1.1
4,662,907 + +1.4
4,662,907 + +0.6
4,662,908 - -0.7
4,662,908 - +0.1
4,662,908 - +0.0
4,662,908 - +0.5
4,662,988 + QEN71_RS21030 0.11 -1.1

Or see this region's nucleotide sequence