Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09925

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09915 and QEN71_RS09920 overlap by 4 nucleotidesQEN71_RS09920 and QEN71_RS09925 are separated by 74 nucleotidesQEN71_RS09925 and QEN71_RS09930 are separated by 103 nucleotidesQEN71_RS09930 and QEN71_RS09935 are separated by 129 nucleotides QEN71_RS09915: QEN71_RS09915 - VTT domain-containing protein, at 2,207,799 to 2,210,006 _RS09915 QEN71_RS09920: QEN71_RS09920 - endonuclease/exonuclease/phosphatase family protein, at 2,210,003 to 2,210,755 _RS09920 QEN71_RS09925: QEN71_RS09925 - hypothetical protein, at 2,210,830 to 2,210,991 _RS09925 QEN71_RS09930: QEN71_RS09930 - hypothetical protein, at 2,211,095 to 2,211,697 _RS09930 QEN71_RS09935: QEN71_RS09935 - chemotaxis protein, at 2,211,827 to 2,212,237 _RS09935 Position (kb) 2210 2211Strain fitness (log2 ratio) -2 -1 0 1 2at 2210.023 kb on + strandat 2210.078 kb on + strandat 2210.078 kb on + strandat 2210.078 kb on + strandat 2210.079 kb on - strand, within QEN71_RS09920at 2210.079 kb on - strand, within QEN71_RS09920at 2210.079 kb on - strand, within QEN71_RS09920at 2210.269 kb on + strand, within QEN71_RS09920at 2210.750 kb on + strandat 2210.750 kb on + strandat 2210.750 kb on + strandat 2210.750 kb on + strandat 2210.751 kb on - strandat 2210.751 kb on - strandat 2210.751 kb on - strandat 2210.753 kb on + strandat 2210.754 kb on - strandat 2210.756 kb on + strandat 2210.757 kb on - strandat 2210.757 kb on - strandat 2210.836 kb on - strandat 2210.846 kb on - strandat 2210.996 kb on + strandat 2210.996 kb on + strandat 2210.996 kb on + strandat 2211.009 kb on - strandat 2211.009 kb on - strandat 2211.082 kb on - strandat 2211.253 kb on + strand, within QEN71_RS09930at 2211.390 kb on + strand, within QEN71_RS09930at 2211.390 kb on + strand, within QEN71_RS09930at 2211.391 kb on - strand, within QEN71_RS09930at 2211.391 kb on - strand, within QEN71_RS09930at 2211.425 kb on + strand, within QEN71_RS09930at 2211.425 kb on + strand, within QEN71_RS09930at 2211.425 kb on + strand, within QEN71_RS09930at 2211.426 kb on - strand, within QEN71_RS09930at 2211.602 kb on + strand, within QEN71_RS09930at 2211.602 kb on + strand, within QEN71_RS09930at 2211.603 kb on - strand, within QEN71_RS09930at 2211.603 kb on - strand, within QEN71_RS09930at 2211.603 kb on - strand, within QEN71_RS09930at 2211.728 kb on + strandat 2211.729 kb on - strandat 2211.729 kb on - strandat 2211.729 kb on - strandat 2211.829 kb on - strandat 2211.829 kb on - strandat 2211.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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2,210,023 + -1.9
2,210,078 + +0.3
2,210,078 + +0.5
2,210,078 + -0.7
2,210,079 - QEN71_RS09920 0.10 +0.8
2,210,079 - QEN71_RS09920 0.10 -0.8
2,210,079 - QEN71_RS09920 0.10 +2.1
2,210,269 + QEN71_RS09920 0.35 +0.4
2,210,750 + +0.5
2,210,750 + -0.9
2,210,750 + -1.2
2,210,750 + -0.1
2,210,751 - -0.1
2,210,751 - -1.0
2,210,751 - -0.1
2,210,753 + +0.1
2,210,754 - +0.2
2,210,756 + +0.8
2,210,757 - +0.3
2,210,757 - -1.3
2,210,836 - -0.1
2,210,846 - +0.1
2,210,996 + -0.8
2,210,996 + -0.5
2,210,996 + +0.1
2,211,009 - +0.1
2,211,009 - -0.1
2,211,082 - -0.3
2,211,253 + QEN71_RS09930 0.26 -0.1
2,211,390 + QEN71_RS09930 0.49 -0.7
2,211,390 + QEN71_RS09930 0.49 +0.3
2,211,391 - QEN71_RS09930 0.49 -1.1
2,211,391 - QEN71_RS09930 0.49 -0.9
2,211,425 + QEN71_RS09930 0.55 +0.9
2,211,425 + QEN71_RS09930 0.55 -0.3
2,211,425 + QEN71_RS09930 0.55 +0.8
2,211,426 - QEN71_RS09930 0.55 -0.3
2,211,602 + QEN71_RS09930 0.84 +0.7
2,211,602 + QEN71_RS09930 0.84 +1.8
2,211,603 - QEN71_RS09930 0.84 -0.7
2,211,603 - QEN71_RS09930 0.84 +0.0
2,211,603 - QEN71_RS09930 0.84 -0.0
2,211,728 + -1.3
2,211,729 - -0.9
2,211,729 - +1.5
2,211,729 - -0.5
2,211,829 - +0.1
2,211,829 - -0.6
2,211,829 - +0.8

Or see this region's nucleotide sequence