Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09595

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09585 and QEN71_RS09590 are separated by 60 nucleotidesQEN71_RS09590 and QEN71_RS09595 are separated by 122 nucleotidesQEN71_RS09595 and QEN71_RS09600 are separated by 28 nucleotides QEN71_RS09585: QEN71_RS09585 - ester cyclase, at 2,142,116 to 2,142,511 _RS09585 QEN71_RS09590: QEN71_RS09590 - XRE family transcriptional regulator, at 2,142,572 to 2,143,216 _RS09590 QEN71_RS09595: QEN71_RS09595 - MFS transporter, at 2,143,339 to 2,144,625 _RS09595 QEN71_RS09600: QEN71_RS09600 - amidase family protein, at 2,144,654 to 2,146,180 _RS09600 Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -2 -1 0 1 2at 2142.483 kb on + strandat 2142.484 kb on - strandat 2142.484 kb on - strandat 2142.484 kb on - strandat 2142.551 kb on + strandat 2142.552 kb on - strandat 2142.552 kb on - strandat 2142.552 kb on - strandat 2142.552 kb on - strandat 2142.552 kb on - strandat 2142.552 kb on - strandat 2142.552 kb on - strandat 2142.605 kb on - strandat 2142.654 kb on + strand, within QEN71_RS09590at 2142.654 kb on + strand, within QEN71_RS09590at 2142.681 kb on + strand, within QEN71_RS09590at 2142.681 kb on + strand, within QEN71_RS09590at 2142.682 kb on - strand, within QEN71_RS09590at 2142.682 kb on - strand, within QEN71_RS09590at 2142.682 kb on - strand, within QEN71_RS09590at 2142.775 kb on + strand, within QEN71_RS09590at 2142.784 kb on + strand, within QEN71_RS09590at 2142.785 kb on - strand, within QEN71_RS09590at 2142.785 kb on - strand, within QEN71_RS09590at 2142.785 kb on - strand, within QEN71_RS09590at 2142.786 kb on + strand, within QEN71_RS09590at 2142.786 kb on + strand, within QEN71_RS09590at 2142.786 kb on + strand, within QEN71_RS09590at 2142.786 kb on + strand, within QEN71_RS09590at 2142.787 kb on - strand, within QEN71_RS09590at 2142.787 kb on - strand, within QEN71_RS09590at 2142.787 kb on - strand, within QEN71_RS09590at 2142.787 kb on - strand, within QEN71_RS09590at 2142.787 kb on - strand, within QEN71_RS09590at 2142.882 kb on + strand, within QEN71_RS09590at 2142.882 kb on + strand, within QEN71_RS09590at 2142.883 kb on - strand, within QEN71_RS09590at 2142.883 kb on - strand, within QEN71_RS09590at 2142.883 kb on - strand, within QEN71_RS09590at 2142.883 kb on - strand, within QEN71_RS09590at 2142.883 kb on - strand, within QEN71_RS09590at 2142.897 kb on + strand, within QEN71_RS09590at 2142.897 kb on + strand, within QEN71_RS09590at 2143.023 kb on + strand, within QEN71_RS09590at 2143.024 kb on - strand, within QEN71_RS09590at 2143.272 kb on + strandat 2143.272 kb on + strandat 2143.272 kb on + strandat 2143.273 kb on - strandat 2143.274 kb on + strandat 2143.274 kb on + strandat 2143.275 kb on - strandat 2143.279 kb on + strandat 2143.279 kb on + strandat 2143.279 kb on + strandat 2143.280 kb on - strandat 2143.280 kb on - strandat 2143.280 kb on - strandat 2143.280 kb on - strandat 2143.280 kb on - strandat 2143.306 kb on + strandat 2143.306 kb on + strandat 2143.307 kb on - strandat 2143.424 kb on - strandat 2143.438 kb on + strandat 2143.439 kb on - strandat 2143.439 kb on - strandat 2143.574 kb on - strand, within QEN71_RS09595at 2143.663 kb on + strand, within QEN71_RS09595at 2143.771 kb on + strand, within QEN71_RS09595at 2143.772 kb on - strand, within QEN71_RS09595at 2143.772 kb on - strand, within QEN71_RS09595at 2143.772 kb on - strand, within QEN71_RS09595at 2143.772 kb on - strand, within QEN71_RS09595at 2143.772 kb on - strand, within QEN71_RS09595at 2144.101 kb on + strand, within QEN71_RS09595at 2144.101 kb on + strand, within QEN71_RS09595at 2144.102 kb on - strand, within QEN71_RS09595at 2144.102 kb on - strand, within QEN71_RS09595at 2144.102 kb on - strand, within QEN71_RS09595at 2144.293 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.455 kb on + strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.456 kb on - strand, within QEN71_RS09595at 2144.548 kb on + strandat 2144.548 kb on + strandat 2144.548 kb on + strandat 2144.548 kb on + strandat 2144.548 kb on + strandat 2144.548 kb on + strandat 2144.549 kb on - strandat 2144.549 kb on - strandat 2144.549 kb on - strandat 2144.549 kb on - strandat 2144.659 kb on + strandat 2144.659 kb on + strandat 2144.659 kb on + strandat 2144.659 kb on + strandat 2144.659 kb on + strandat 2144.660 kb on - strandat 2144.660 kb on - strandat 2144.807 kb on + strand, within QEN71_RS09600at 2144.807 kb on + strand, within QEN71_RS09600at 2144.808 kb on - strand, within QEN71_RS09600at 2144.808 kb on - strand, within QEN71_RS09600at 2144.808 kb on - strand, within QEN71_RS09600at 2144.808 kb on - strand, within QEN71_RS09600at 2144.899 kb on - strand, within QEN71_RS09600at 2144.936 kb on + strand, within QEN71_RS09600at 2144.937 kb on - strand, within QEN71_RS09600at 2144.937 kb on - strand, within QEN71_RS09600at 2144.937 kb on - strand, within QEN71_RS09600at 2144.937 kb on - strand, within QEN71_RS09600at 2145.062 kb on - strand, within QEN71_RS09600at 2145.062 kb on - strand, within QEN71_RS09600at 2145.108 kb on - strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.452 kb on + strand, within QEN71_RS09600at 2145.541 kb on + strand, within QEN71_RS09600at 2145.541 kb on + strand, within QEN71_RS09600at 2145.541 kb on + strand, within QEN71_RS09600at 2145.542 kb on - strand, within QEN71_RS09600at 2145.542 kb on - strand, within QEN71_RS09600at 2145.542 kb on - strand, within QEN71_RS09600

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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2,142,483 + -1.1
2,142,484 - +0.9
2,142,484 - +0.7
2,142,484 - -0.3
2,142,551 + +1.0
2,142,552 - -0.0
2,142,552 - -0.9
2,142,552 - -0.2
2,142,552 - +0.6
2,142,552 - +0.6
2,142,552 - -2.2
2,142,552 - +0.3
2,142,605 - +0.9
2,142,654 + QEN71_RS09590 0.13 +0.6
2,142,654 + QEN71_RS09590 0.13 -1.0
2,142,681 + QEN71_RS09590 0.17 -0.1
2,142,681 + QEN71_RS09590 0.17 -0.3
2,142,682 - QEN71_RS09590 0.17 +0.8
2,142,682 - QEN71_RS09590 0.17 -0.2
2,142,682 - QEN71_RS09590 0.17 +0.7
2,142,775 + QEN71_RS09590 0.31 -0.1
2,142,784 + QEN71_RS09590 0.33 -0.9
2,142,785 - QEN71_RS09590 0.33 -0.2
2,142,785 - QEN71_RS09590 0.33 -0.2
2,142,785 - QEN71_RS09590 0.33 +0.4
2,142,786 + QEN71_RS09590 0.33 +0.2
2,142,786 + QEN71_RS09590 0.33 +0.2
2,142,786 + QEN71_RS09590 0.33 +0.5
2,142,786 + QEN71_RS09590 0.33 -0.8
2,142,787 - QEN71_RS09590 0.33 -0.4
2,142,787 - QEN71_RS09590 0.33 -0.6
2,142,787 - QEN71_RS09590 0.33 +0.2
2,142,787 - QEN71_RS09590 0.33 -0.2
2,142,787 - QEN71_RS09590 0.33 -0.8
2,142,882 + QEN71_RS09590 0.48 -0.6
2,142,882 + QEN71_RS09590 0.48 -1.2
2,142,883 - QEN71_RS09590 0.48 -0.1
2,142,883 - QEN71_RS09590 0.48 +0.7
2,142,883 - QEN71_RS09590 0.48 -0.7
2,142,883 - QEN71_RS09590 0.48 -0.1
2,142,883 - QEN71_RS09590 0.48 +0.3
2,142,897 + QEN71_RS09590 0.50 -0.2
2,142,897 + QEN71_RS09590 0.50 -0.1
2,143,023 + QEN71_RS09590 0.70 -0.5
2,143,024 - QEN71_RS09590 0.70 -0.3
2,143,272 + -0.2
2,143,272 + +0.0
2,143,272 + -2.4
2,143,273 - +1.5
2,143,274 + -0.7
2,143,274 + -1.5
2,143,275 - -0.2
2,143,279 + +2.5
2,143,279 + +0.7
2,143,279 + -0.7
2,143,280 - +1.0
2,143,280 - +0.7
2,143,280 - +0.9
2,143,280 - -0.1
2,143,280 - -0.1
2,143,306 + -0.0
2,143,306 + -0.2
2,143,307 - -0.1
2,143,424 - -0.4
2,143,438 + +0.2
2,143,439 - -0.3
2,143,439 - +0.6
2,143,574 - QEN71_RS09595 0.18 -1.6
2,143,663 + QEN71_RS09595 0.25 +0.1
2,143,771 + QEN71_RS09595 0.34 -0.8
2,143,772 - QEN71_RS09595 0.34 -0.0
2,143,772 - QEN71_RS09595 0.34 +0.6
2,143,772 - QEN71_RS09595 0.34 -0.5
2,143,772 - QEN71_RS09595 0.34 +0.4
2,143,772 - QEN71_RS09595 0.34 -0.1
2,144,101 + QEN71_RS09595 0.59 -0.8
2,144,101 + QEN71_RS09595 0.59 +1.0
2,144,102 - QEN71_RS09595 0.59 +0.8
2,144,102 - QEN71_RS09595 0.59 +0.0
2,144,102 - QEN71_RS09595 0.59 -0.2
2,144,293 + QEN71_RS09595 0.74 +0.1
2,144,455 + QEN71_RS09595 0.87 +0.4
2,144,455 + QEN71_RS09595 0.87 -0.2
2,144,455 + QEN71_RS09595 0.87 -0.1
2,144,455 + QEN71_RS09595 0.87 -0.0
2,144,455 + QEN71_RS09595 0.87 +0.3
2,144,455 + QEN71_RS09595 0.87 -0.9
2,144,455 + QEN71_RS09595 0.87 +0.7
2,144,455 + QEN71_RS09595 0.87 -1.6
2,144,455 + QEN71_RS09595 0.87 -1.3
2,144,455 + QEN71_RS09595 0.87 +1.3
2,144,455 + QEN71_RS09595 0.87 +0.2
2,144,455 + QEN71_RS09595 0.87 +1.3
2,144,455 + QEN71_RS09595 0.87 +1.3
2,144,456 - QEN71_RS09595 0.87 -1.0
2,144,456 - QEN71_RS09595 0.87 +0.1
2,144,456 - QEN71_RS09595 0.87 -0.8
2,144,456 - QEN71_RS09595 0.87 -0.6
2,144,456 - QEN71_RS09595 0.87 +0.1
2,144,456 - QEN71_RS09595 0.87 -0.7
2,144,456 - QEN71_RS09595 0.87 +0.8
2,144,456 - QEN71_RS09595 0.87 +0.3
2,144,456 - QEN71_RS09595 0.87 -1.3
2,144,456 - QEN71_RS09595 0.87 -0.1
2,144,456 - QEN71_RS09595 0.87 -0.7
2,144,548 + -1.3
2,144,548 + +0.2
2,144,548 + +0.5
2,144,548 + -0.1
2,144,548 + +0.1
2,144,548 + +0.7
2,144,549 - +2.3
2,144,549 - +1.2
2,144,549 - +0.4
2,144,549 - +0.9
2,144,659 + +0.5
2,144,659 + +0.2
2,144,659 + +0.9
2,144,659 + +0.2
2,144,659 + +0.7
2,144,660 - -1.2
2,144,660 - +0.7
2,144,807 + QEN71_RS09600 0.10 -0.0
2,144,807 + QEN71_RS09600 0.10 -0.2
2,144,808 - QEN71_RS09600 0.10 -0.8
2,144,808 - QEN71_RS09600 0.10 +0.5
2,144,808 - QEN71_RS09600 0.10 +1.0
2,144,808 - QEN71_RS09600 0.10 +0.6
2,144,899 - QEN71_RS09600 0.16 -0.3
2,144,936 + QEN71_RS09600 0.18 +0.2
2,144,937 - QEN71_RS09600 0.19 +0.3
2,144,937 - QEN71_RS09600 0.19 -0.2
2,144,937 - QEN71_RS09600 0.19 -1.2
2,144,937 - QEN71_RS09600 0.19 +0.0
2,145,062 - QEN71_RS09600 0.27 -0.5
2,145,062 - QEN71_RS09600 0.27 +0.5
2,145,108 - QEN71_RS09600 0.30 -0.6
2,145,386 + QEN71_RS09600 0.48 +2.0
2,145,386 + QEN71_RS09600 0.48 -0.1
2,145,386 + QEN71_RS09600 0.48 -0.5
2,145,386 + QEN71_RS09600 0.48 -0.3
2,145,387 - QEN71_RS09600 0.48 +0.3
2,145,387 - QEN71_RS09600 0.48 -0.2
2,145,387 - QEN71_RS09600 0.48 -0.2
2,145,387 - QEN71_RS09600 0.48 +0.4
2,145,452 + QEN71_RS09600 0.52 -0.1
2,145,541 + QEN71_RS09600 0.58 -0.6
2,145,541 + QEN71_RS09600 0.58 -2.2
2,145,541 + QEN71_RS09600 0.58 +1.1
2,145,542 - QEN71_RS09600 0.58 -0.2
2,145,542 - QEN71_RS09600 0.58 -0.3
2,145,542 - QEN71_RS09600 0.58 +0.6

Or see this region's nucleotide sequence