Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08740

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS08735 and QEN71_RS08740 are separated by 112 nucleotidesQEN71_RS08740 and QEN71_RS08745 are separated by 165 nucleotides QEN71_RS08735: QEN71_RS08735 - OmpA family protein, at 1,962,582 to 1,963,721 _RS08735 QEN71_RS08740: QEN71_RS08740 - flagellar brake protein, at 1,963,834 to 1,964,784 _RS08740 QEN71_RS08745: QEN71_RS08745 - precorrin-3B C(17)-methyltransferase, at 1,964,950 to 1,966,677 _RS08745 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -2 -1 0 1 2at 1962.876 kb on + strand, within QEN71_RS08735at 1962.877 kb on - strand, within QEN71_RS08735at 1962.877 kb on - strand, within QEN71_RS08735at 1962.877 kb on - strand, within QEN71_RS08735at 1963.157 kb on + strand, within QEN71_RS08735at 1963.157 kb on + strand, within QEN71_RS08735at 1963.158 kb on - strand, within QEN71_RS08735at 1963.226 kb on - strand, within QEN71_RS08735at 1963.226 kb on - strand, within QEN71_RS08735at 1963.226 kb on - strand, within QEN71_RS08735at 1963.719 kb on + strandat 1963.835 kb on + strandat 1963.835 kb on + strandat 1963.835 kb on + strandat 1963.886 kb on + strandat 1963.886 kb on + strandat 1963.886 kb on + strandat 1963.886 kb on + strandat 1963.887 kb on - strandat 1963.887 kb on - strandat 1963.887 kb on - strandat 1964.246 kb on + strand, within QEN71_RS08740at 1964.247 kb on - strand, within QEN71_RS08740at 1964.247 kb on - strand, within QEN71_RS08740at 1964.247 kb on - strand, within QEN71_RS08740at 1964.247 kb on - strand, within QEN71_RS08740at 1964.809 kb on + strandat 1964.813 kb on + strandat 1964.813 kb on + strandat 1964.814 kb on - strandat 1964.818 kb on + strandat 1964.819 kb on - strandat 1964.820 kb on + strandat 1964.843 kb on + strandat 1964.910 kb on + strandat 1964.910 kb on + strandat 1964.910 kb on + strandat 1964.910 kb on + strandat 1964.911 kb on - strandat 1964.911 kb on - strandat 1964.932 kb on - strandat 1964.942 kb on - strandat 1964.942 kb on - strandat 1964.942 kb on - strandat 1964.942 kb on - strandat 1964.942 kb on - strandat 1964.951 kb on + strandat 1964.952 kb on - strandat 1964.971 kb on - strandat 1964.971 kb on - strandat 1964.972 kb on + strandat 1964.972 kb on + strandat 1964.972 kb on + strandat 1964.973 kb on - strandat 1965.031 kb on + strandat 1965.031 kb on + strandat 1965.031 kb on + strandat 1965.031 kb on + strandat 1965.032 kb on - strandat 1965.032 kb on - strandat 1965.048 kb on + strandat 1965.114 kb on + strandat 1965.127 kb on + strand, within QEN71_RS08745at 1965.127 kb on + strand, within QEN71_RS08745at 1965.127 kb on + strand, within QEN71_RS08745at 1965.128 kb on - strand, within QEN71_RS08745at 1965.128 kb on - strand, within QEN71_RS08745at 1965.165 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.215 kb on + strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.216 kb on - strand, within QEN71_RS08745at 1965.408 kb on - strand, within QEN71_RS08745at 1965.408 kb on - strand, within QEN71_RS08745at 1965.611 kb on + strand, within QEN71_RS08745at 1965.611 kb on + strand, within QEN71_RS08745at 1965.611 kb on + strand, within QEN71_RS08745at 1965.612 kb on - strand, within QEN71_RS08745at 1965.612 kb on - strand, within QEN71_RS08745at 1965.612 kb on - strand, within QEN71_RS08745at 1965.612 kb on - strand, within QEN71_RS08745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
remove
1,962,876 + QEN71_RS08735 0.26 -0.2
1,962,877 - QEN71_RS08735 0.26 +0.5
1,962,877 - QEN71_RS08735 0.26 -0.2
1,962,877 - QEN71_RS08735 0.26 +2.1
1,963,157 + QEN71_RS08735 0.50 +0.8
1,963,157 + QEN71_RS08735 0.50 -0.9
1,963,158 - QEN71_RS08735 0.51 -0.7
1,963,226 - QEN71_RS08735 0.56 -0.2
1,963,226 - QEN71_RS08735 0.56 -0.3
1,963,226 - QEN71_RS08735 0.56 -0.5
1,963,719 + -0.7
1,963,835 + +0.3
1,963,835 + -0.3
1,963,835 + +0.9
1,963,886 + -0.2
1,963,886 + -0.1
1,963,886 + -0.5
1,963,886 + +1.7
1,963,887 - -0.6
1,963,887 - +0.4
1,963,887 - -0.1
1,964,246 + QEN71_RS08740 0.43 -0.5
1,964,247 - QEN71_RS08740 0.43 -0.3
1,964,247 - QEN71_RS08740 0.43 -0.6
1,964,247 - QEN71_RS08740 0.43 -0.6
1,964,247 - QEN71_RS08740 0.43 +0.5
1,964,809 + -1.1
1,964,813 + -0.9
1,964,813 + +2.5
1,964,814 - -0.9
1,964,818 + -1.2
1,964,819 - +1.5
1,964,820 + +0.7
1,964,843 + -0.1
1,964,910 + +0.4
1,964,910 + -0.5
1,964,910 + +0.3
1,964,910 + -0.1
1,964,911 - -1.5
1,964,911 - -0.3
1,964,932 - -0.7
1,964,942 - +0.3
1,964,942 - -0.4
1,964,942 - +0.3
1,964,942 - -0.1
1,964,942 - +1.0
1,964,951 + -0.9
1,964,952 - +0.1
1,964,971 - +0.1
1,964,971 - +1.0
1,964,972 + -1.1
1,964,972 + +0.4
1,964,972 + +0.4
1,964,973 - -0.0
1,965,031 + -0.0
1,965,031 + +0.6
1,965,031 + -0.3
1,965,031 + -0.2
1,965,032 - +0.2
1,965,032 - +0.7
1,965,048 + +0.2
1,965,114 + -0.5
1,965,127 + QEN71_RS08745 0.10 -0.1
1,965,127 + QEN71_RS08745 0.10 +1.4
1,965,127 + QEN71_RS08745 0.10 -0.2
1,965,128 - QEN71_RS08745 0.10 -0.8
1,965,128 - QEN71_RS08745 0.10 +1.4
1,965,165 + QEN71_RS08745 0.12 -1.5
1,965,215 + QEN71_RS08745 0.15 -0.6
1,965,215 + QEN71_RS08745 0.15 -1.5
1,965,215 + QEN71_RS08745 0.15 -2.5
1,965,215 + QEN71_RS08745 0.15 +0.3
1,965,215 + QEN71_RS08745 0.15 +0.5
1,965,215 + QEN71_RS08745 0.15 -0.4
1,965,215 + QEN71_RS08745 0.15 +0.0
1,965,215 + QEN71_RS08745 0.15 -0.1
1,965,215 + QEN71_RS08745 0.15 +0.7
1,965,215 + QEN71_RS08745 0.15 +0.7
1,965,215 + QEN71_RS08745 0.15 -1.6
1,965,215 + QEN71_RS08745 0.15 -0.1
1,965,216 - QEN71_RS08745 0.15 -0.2
1,965,216 - QEN71_RS08745 0.15 -1.1
1,965,216 - QEN71_RS08745 0.15 +0.8
1,965,216 - QEN71_RS08745 0.15 -0.2
1,965,216 - QEN71_RS08745 0.15 +1.0
1,965,216 - QEN71_RS08745 0.15 +1.9
1,965,216 - QEN71_RS08745 0.15 +0.1
1,965,216 - QEN71_RS08745 0.15 -1.3
1,965,216 - QEN71_RS08745 0.15 -0.3
1,965,216 - QEN71_RS08745 0.15 +0.1
1,965,216 - QEN71_RS08745 0.15 +0.6
1,965,216 - QEN71_RS08745 0.15 -0.6
1,965,216 - QEN71_RS08745 0.15 -0.7
1,965,216 - QEN71_RS08745 0.15 -0.3
1,965,216 - QEN71_RS08745 0.15 +0.9
1,965,216 - QEN71_RS08745 0.15 +0.6
1,965,216 - QEN71_RS08745 0.15 +0.1
1,965,408 - QEN71_RS08745 0.27 +0.1
1,965,408 - QEN71_RS08745 0.27 -0.7
1,965,611 + QEN71_RS08745 0.38 -0.1
1,965,611 + QEN71_RS08745 0.38 -0.4
1,965,611 + QEN71_RS08745 0.38 -0.9
1,965,612 - QEN71_RS08745 0.38 -0.2
1,965,612 - QEN71_RS08745 0.38 -0.5
1,965,612 - QEN71_RS08745 0.38 -0.4
1,965,612 - QEN71_RS08745 0.38 -0.0

Or see this region's nucleotide sequence