Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS40720

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS40710 and QEN71_RS40715 overlap by 4 nucleotidesQEN71_RS40715 and QEN71_RS40720 overlap by 4 nucleotidesQEN71_RS40720 and QEN71_RS40725 overlap by 4 nucleotides QEN71_RS40710: QEN71_RS40710 - hypothetical protein, at 201,518 to 202,759 _RS40710 QEN71_RS40715: QEN71_RS40715 - heparin lyase I family protein, at 202,756 to 203,595 _RS40715 QEN71_RS40720: QEN71_RS40720 - glycosyltransferase, at 203,592 to 204,584 _RS40720 QEN71_RS40725: QEN71_RS40725 - hypothetical protein, at 204,581 to 205,297 _RS40725 Position (kb) 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1at 202.635 kb on - strandat 202.646 kb on + strandat 202.759 kb on + strandat 202.760 kb on - strandat 202.810 kb on - strandat 202.837 kb on + strandat 202.876 kb on + strand, within QEN71_RS40715at 202.884 kb on + strand, within QEN71_RS40715at 202.885 kb on - strand, within QEN71_RS40715at 202.885 kb on - strand, within QEN71_RS40715at 202.886 kb on + strand, within QEN71_RS40715at 202.887 kb on - strand, within QEN71_RS40715at 202.887 kb on - strand, within QEN71_RS40715at 202.943 kb on + strand, within QEN71_RS40715at 202.943 kb on + strand, within QEN71_RS40715at 202.943 kb on + strand, within QEN71_RS40715at 203.015 kb on + strand, within QEN71_RS40715at 203.110 kb on + strand, within QEN71_RS40715at 203.110 kb on + strand, within QEN71_RS40715at 203.111 kb on - strand, within QEN71_RS40715at 203.118 kb on - strand, within QEN71_RS40715at 203.118 kb on - strand, within QEN71_RS40715at 203.118 kb on - strand, within QEN71_RS40715at 203.179 kb on + strand, within QEN71_RS40715at 203.179 kb on + strand, within QEN71_RS40715at 203.179 kb on + strand, within QEN71_RS40715at 203.255 kb on + strand, within QEN71_RS40715at 203.256 kb on - strand, within QEN71_RS40715at 203.273 kb on - strand, within QEN71_RS40715at 203.273 kb on - strand, within QEN71_RS40715at 203.347 kb on + strand, within QEN71_RS40715at 203.347 kb on + strand, within QEN71_RS40715at 203.443 kb on - strand, within QEN71_RS40715at 203.511 kb on + strand, within QEN71_RS40715at 203.512 kb on - strandat 203.523 kb on + strandat 203.523 kb on + strandat 203.524 kb on - strandat 203.548 kb on + strandat 203.548 kb on + strandat 203.548 kb on + strandat 203.548 kb on + strandat 203.549 kb on - strandat 203.549 kb on - strandat 203.549 kb on - strandat 203.549 kb on - strandat 203.549 kb on - strandat 203.549 kb on - strandat 203.549 kb on - strandat 203.566 kb on + strandat 203.566 kb on + strandat 203.603 kb on + strandat 203.650 kb on + strandat 203.689 kb on + strandat 203.690 kb on - strandat 203.690 kb on - strandat 203.724 kb on - strand, within QEN71_RS40720at 203.941 kb on - strand, within QEN71_RS40720at 203.949 kb on + strand, within QEN71_RS40720at 203.976 kb on - strand, within QEN71_RS40720at 204.044 kb on - strand, within QEN71_RS40720at 204.078 kb on + strand, within QEN71_RS40720at 204.078 kb on + strand, within QEN71_RS40720at 204.079 kb on - strand, within QEN71_RS40720at 204.085 kb on - strand, within QEN71_RS40720at 204.085 kb on - strand, within QEN71_RS40720at 204.087 kb on + strand, within QEN71_RS40720at 204.087 kb on + strand, within QEN71_RS40720at 204.276 kb on + strand, within QEN71_RS40720at 204.276 kb on + strand, within QEN71_RS40720at 204.277 kb on - strand, within QEN71_RS40720at 204.277 kb on - strand, within QEN71_RS40720at 204.300 kb on + strand, within QEN71_RS40720at 204.365 kb on - strand, within QEN71_RS40720at 204.379 kb on + strand, within QEN71_RS40720at 204.427 kb on + strand, within QEN71_RS40720at 204.428 kb on - strand, within QEN71_RS40720at 204.560 kb on + strandat 204.560 kb on + strandat 204.561 kb on - strandat 204.605 kb on + strandat 204.605 kb on + strandat 204.605 kb on + strandat 204.605 kb on + strandat 204.606 kb on - strandat 204.606 kb on - strandat 204.610 kb on - strandat 204.617 kb on + strandat 204.814 kb on - strand, within QEN71_RS40725at 204.854 kb on - strand, within QEN71_RS40725at 204.866 kb on + strand, within QEN71_RS40725at 205.117 kb on + strand, within QEN71_RS40725at 205.118 kb on - strand, within QEN71_RS40725at 205.120 kb on - strand, within QEN71_RS40725at 205.120 kb on - strand, within QEN71_RS40725at 205.120 kb on - strand, within QEN71_RS40725at 205.314 kb on - strandat 205.314 kb on - strandat 205.378 kb on - strandat 205.510 kb on + strandat 205.510 kb on + strandat 205.510 kb on + strandat 205.511 kb on - strandat 205.511 kb on - strandat 205.511 kb on - strandat 205.511 kb on - strandat 205.552 kb on - strandat 205.576 kb on + strandat 205.576 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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202,635 - -0.3
202,646 + -1.8
202,759 + +1.2
202,760 - -0.2
202,810 - -0.9
202,837 + -1.1
202,876 + QEN71_RS40715 0.14 +0.6
202,884 + QEN71_RS40715 0.15 -0.9
202,885 - QEN71_RS40715 0.15 -0.9
202,885 - QEN71_RS40715 0.15 -0.7
202,886 + QEN71_RS40715 0.15 +1.3
202,887 - QEN71_RS40715 0.16 +0.4
202,887 - QEN71_RS40715 0.16 -0.5
202,943 + QEN71_RS40715 0.22 +0.1
202,943 + QEN71_RS40715 0.22 -0.1
202,943 + QEN71_RS40715 0.22 -1.1
203,015 + QEN71_RS40715 0.31 -0.2
203,110 + QEN71_RS40715 0.42 -0.0
203,110 + QEN71_RS40715 0.42 -0.7
203,111 - QEN71_RS40715 0.42 -0.2
203,118 - QEN71_RS40715 0.43 -0.5
203,118 - QEN71_RS40715 0.43 -0.5
203,118 - QEN71_RS40715 0.43 -1.7
203,179 + QEN71_RS40715 0.50 +1.3
203,179 + QEN71_RS40715 0.50 +0.3
203,179 + QEN71_RS40715 0.50 -0.4
203,255 + QEN71_RS40715 0.59 -0.3
203,256 - QEN71_RS40715 0.60 -1.1
203,273 - QEN71_RS40715 0.62 +0.2
203,273 - QEN71_RS40715 0.62 +0.0
203,347 + QEN71_RS40715 0.70 -0.0
203,347 + QEN71_RS40715 0.70 -0.9
203,443 - QEN71_RS40715 0.82 -0.2
203,511 + QEN71_RS40715 0.90 +0.3
203,512 - -0.3
203,523 + -1.8
203,523 + +0.1
203,524 - +0.8
203,548 + -0.9
203,548 + +0.7
203,548 + -1.1
203,548 + -0.5
203,549 - -2.9
203,549 - -0.7
203,549 - -0.8
203,549 - -0.3
203,549 - +1.0
203,549 - -1.7
203,549 - +0.3
203,566 + -0.4
203,566 + +0.3
203,603 + -0.2
203,650 + +0.7
203,689 + -1.3
203,690 - +0.0
203,690 - -0.0
203,724 - QEN71_RS40720 0.13 +0.4
203,941 - QEN71_RS40720 0.35 -0.9
203,949 + QEN71_RS40720 0.36 +0.0
203,976 - QEN71_RS40720 0.39 +0.4
204,044 - QEN71_RS40720 0.46 +0.1
204,078 + QEN71_RS40720 0.49 -0.4
204,078 + QEN71_RS40720 0.49 -2.0
204,079 - QEN71_RS40720 0.49 -1.9
204,085 - QEN71_RS40720 0.50 +0.0
204,085 - QEN71_RS40720 0.50 +0.0
204,087 + QEN71_RS40720 0.50 +0.5
204,087 + QEN71_RS40720 0.50 -0.1
204,276 + QEN71_RS40720 0.69 -1.0
204,276 + QEN71_RS40720 0.69 -0.0
204,277 - QEN71_RS40720 0.69 +0.3
204,277 - QEN71_RS40720 0.69 +0.5
204,300 + QEN71_RS40720 0.71 -0.2
204,365 - QEN71_RS40720 0.78 -1.2
204,379 + QEN71_RS40720 0.79 -2.0
204,427 + QEN71_RS40720 0.84 -0.7
204,428 - QEN71_RS40720 0.84 -2.3
204,560 + +0.4
204,560 + +0.1
204,561 - -0.9
204,605 + +0.7
204,605 + -0.3
204,605 + -0.6
204,605 + +0.4
204,606 - -1.0
204,606 - +0.2
204,610 - +0.8
204,617 + +0.7
204,814 - QEN71_RS40725 0.32 +0.1
204,854 - QEN71_RS40725 0.38 -0.9
204,866 + QEN71_RS40725 0.40 -1.7
205,117 + QEN71_RS40725 0.75 -0.3
205,118 - QEN71_RS40725 0.75 -0.0
205,120 - QEN71_RS40725 0.75 -0.5
205,120 - QEN71_RS40725 0.75 +0.2
205,120 - QEN71_RS40725 0.75 -0.7
205,314 - -0.8
205,314 - -0.1
205,378 - +0.3
205,510 + -0.2
205,510 + -0.6
205,510 + -1.0
205,511 - -0.7
205,511 - -0.9
205,511 - +0.1
205,511 - -1.8
205,552 - +1.5
205,576 + -1.2
205,576 + -0.9

Or see this region's nucleotide sequence