Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36680

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36675 and QEN71_RS36680 are separated by 241 nucleotidesQEN71_RS36680 and QEN71_RS36685 are separated by 261 nucleotides QEN71_RS36675: QEN71_RS36675 - 2-keto-3-deoxygluconate permease, at 1,611,178 to 1,612,176 _RS36675 QEN71_RS36680: QEN71_RS36680 - aromatic alcohol reductase, at 1,612,418 to 1,613,362 _RS36680 QEN71_RS36685: QEN71_RS36685 - LysR family transcriptional regulator, at 1,613,624 to 1,614,514 _RS36685 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -3 -2 -1 0 1at 1611.443 kb on + strand, within QEN71_RS36675at 1611.444 kb on - strand, within QEN71_RS36675at 1611.688 kb on + strand, within QEN71_RS36675at 1611.688 kb on + strand, within QEN71_RS36675at 1611.688 kb on + strand, within QEN71_RS36675at 1611.689 kb on - strand, within QEN71_RS36675at 1611.743 kb on + strand, within QEN71_RS36675at 1611.743 kb on + strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.771 kb on - strand, within QEN71_RS36675at 1611.790 kb on - strand, within QEN71_RS36675at 1611.790 kb on - strand, within QEN71_RS36675at 1611.790 kb on - strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.962 kb on + strand, within QEN71_RS36675at 1611.962 kb on + strand, within QEN71_RS36675at 1611.963 kb on - strand, within QEN71_RS36675at 1611.963 kb on - strand, within QEN71_RS36675at 1611.963 kb on - strand, within QEN71_RS36675at 1612.004 kb on + strand, within QEN71_RS36675at 1612.004 kb on + strand, within QEN71_RS36675at 1612.004 kb on + strand, within QEN71_RS36675at 1612.005 kb on - strand, within QEN71_RS36675at 1612.005 kb on - strand, within QEN71_RS36675at 1612.005 kb on - strand, within QEN71_RS36675at 1612.265 kb on + strandat 1612.265 kb on + strandat 1612.386 kb on - strandat 1612.386 kb on - strandat 1612.570 kb on - strand, within QEN71_RS36680at 1612.570 kb on - strand, within QEN71_RS36680at 1612.647 kb on - strand, within QEN71_RS36680at 1612.689 kb on + strand, within QEN71_RS36680at 1612.690 kb on - strand, within QEN71_RS36680at 1612.996 kb on - strand, within QEN71_RS36680at 1613.487 kb on - strandat 1613.566 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.585 kb on + strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.586 kb on - strandat 1613.621 kb on + strandat 1613.621 kb on + strandat 1613.622 kb on - strandat 1613.622 kb on - strandat 1613.622 kb on - strandat 1613.622 kb on - strandat 1613.622 kb on - strandat 1613.622 kb on - strandat 1613.769 kb on + strand, within QEN71_RS36685at 1613.817 kb on - strand, within QEN71_RS36685at 1613.819 kb on + strand, within QEN71_RS36685at 1613.819 kb on + strand, within QEN71_RS36685at 1613.819 kb on + strand, within QEN71_RS36685at 1613.820 kb on - strand, within QEN71_RS36685at 1613.820 kb on - strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.197 kb on + strand, within QEN71_RS36685at 1614.198 kb on - strand, within QEN71_RS36685at 1614.198 kb on - strand, within QEN71_RS36685at 1614.198 kb on - strand, within QEN71_RS36685at 1614.198 kb on - strand, within QEN71_RS36685at 1614.198 kb on - strand, within QEN71_RS36685at 1614.202 kb on - strand, within QEN71_RS36685at 1614.202 kb on - strand, within QEN71_RS36685at 1614.281 kb on + strand, within QEN71_RS36685at 1614.305 kb on + strand, within QEN71_RS36685at 1614.306 kb on - strand, within QEN71_RS36685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,611,443 + QEN71_RS36675 0.27 -1.6
1,611,444 - QEN71_RS36675 0.27 +0.1
1,611,688 + QEN71_RS36675 0.51 +0.8
1,611,688 + QEN71_RS36675 0.51 -0.3
1,611,688 + QEN71_RS36675 0.51 +0.3
1,611,689 - QEN71_RS36675 0.51 +1.2
1,611,743 + QEN71_RS36675 0.57 -1.1
1,611,743 + QEN71_RS36675 0.57 -0.3
1,611,744 - QEN71_RS36675 0.57 -0.4
1,611,744 - QEN71_RS36675 0.57 -0.2
1,611,744 - QEN71_RS36675 0.57 -0.7
1,611,744 - QEN71_RS36675 0.57 -0.1
1,611,770 + QEN71_RS36675 0.59 -0.1
1,611,770 + QEN71_RS36675 0.59 +1.3
1,611,770 + QEN71_RS36675 0.59 -0.6
1,611,770 + QEN71_RS36675 0.59 -0.8
1,611,771 - QEN71_RS36675 0.59 -0.4
1,611,790 - QEN71_RS36675 0.61 -1.4
1,611,790 - QEN71_RS36675 0.61 +0.3
1,611,790 - QEN71_RS36675 0.61 +0.5
1,611,791 + QEN71_RS36675 0.61 -0.1
1,611,791 + QEN71_RS36675 0.61 +0.5
1,611,791 + QEN71_RS36675 0.61 +0.9
1,611,791 + QEN71_RS36675 0.61 -0.0
1,611,791 + QEN71_RS36675 0.61 -1.2
1,611,791 + QEN71_RS36675 0.61 +0.2
1,611,791 + QEN71_RS36675 0.61 -0.5
1,611,791 + QEN71_RS36675 0.61 +0.9
1,611,792 - QEN71_RS36675 0.61 -0.0
1,611,792 - QEN71_RS36675 0.61 +0.2
1,611,792 - QEN71_RS36675 0.61 -0.0
1,611,792 - QEN71_RS36675 0.61 -0.7
1,611,792 - QEN71_RS36675 0.61 +0.1
1,611,792 - QEN71_RS36675 0.61 +0.5
1,611,792 - QEN71_RS36675 0.61 -0.2
1,611,792 - QEN71_RS36675 0.61 -0.7
1,611,792 - QEN71_RS36675 0.61 -0.0
1,611,962 + QEN71_RS36675 0.78 -0.3
1,611,962 + QEN71_RS36675 0.78 +1.2
1,611,963 - QEN71_RS36675 0.79 -1.5
1,611,963 - QEN71_RS36675 0.79 -0.6
1,611,963 - QEN71_RS36675 0.79 +0.4
1,612,004 + QEN71_RS36675 0.83 +0.1
1,612,004 + QEN71_RS36675 0.83 -0.5
1,612,004 + QEN71_RS36675 0.83 -0.3
1,612,005 - QEN71_RS36675 0.83 +1.1
1,612,005 - QEN71_RS36675 0.83 -0.9
1,612,005 - QEN71_RS36675 0.83 -0.4
1,612,265 + -0.4
1,612,265 + +0.4
1,612,386 - -0.4
1,612,386 - -0.0
1,612,570 - QEN71_RS36680 0.16 +1.5
1,612,570 - QEN71_RS36680 0.16 -2.9
1,612,647 - QEN71_RS36680 0.24 -1.7
1,612,689 + QEN71_RS36680 0.29 -0.4
1,612,690 - QEN71_RS36680 0.29 -0.1
1,612,996 - QEN71_RS36680 0.61 -0.6
1,613,487 - -0.2
1,613,566 + -0.6
1,613,585 + +1.6
1,613,585 + +0.4
1,613,585 + -0.3
1,613,585 + +0.2
1,613,585 + -0.6
1,613,585 + -0.4
1,613,585 + -0.6
1,613,585 + -0.7
1,613,586 - +0.0
1,613,586 - -1.2
1,613,586 - -1.1
1,613,586 - -0.4
1,613,586 - +0.3
1,613,586 - +0.2
1,613,586 - +1.6
1,613,586 - -0.2
1,613,586 - -1.0
1,613,586 - -0.1
1,613,586 - +0.7
1,613,586 - +0.6
1,613,586 - -1.1
1,613,586 - -0.1
1,613,586 - -0.3
1,613,621 + -0.6
1,613,621 + -0.0
1,613,622 - +0.0
1,613,622 - -0.2
1,613,622 - -0.1
1,613,622 - -0.1
1,613,622 - +0.9
1,613,622 - -0.6
1,613,769 + QEN71_RS36685 0.16 -0.4
1,613,817 - QEN71_RS36685 0.22 -0.2
1,613,819 + QEN71_RS36685 0.22 -0.4
1,613,819 + QEN71_RS36685 0.22 +0.4
1,613,819 + QEN71_RS36685 0.22 -0.4
1,613,820 - QEN71_RS36685 0.22 +1.0
1,613,820 - QEN71_RS36685 0.22 +0.1
1,614,197 + QEN71_RS36685 0.64 -0.4
1,614,197 + QEN71_RS36685 0.64 -0.7
1,614,197 + QEN71_RS36685 0.64 +1.3
1,614,197 + QEN71_RS36685 0.64 +1.6
1,614,197 + QEN71_RS36685 0.64 -0.4
1,614,197 + QEN71_RS36685 0.64 -2.1
1,614,197 + QEN71_RS36685 0.64 +0.6
1,614,198 - QEN71_RS36685 0.64 +0.3
1,614,198 - QEN71_RS36685 0.64 -0.1
1,614,198 - QEN71_RS36685 0.64 -0.0
1,614,198 - QEN71_RS36685 0.64 +0.2
1,614,198 - QEN71_RS36685 0.64 +0.0
1,614,202 - QEN71_RS36685 0.65 +0.5
1,614,202 - QEN71_RS36685 0.65 -0.9
1,614,281 + QEN71_RS36685 0.74 -0.4
1,614,305 + QEN71_RS36685 0.76 +0.0
1,614,306 - QEN71_RS36685 0.77 +0.5

Or see this region's nucleotide sequence