Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29825 and QEN71_RS29830 overlap by 4 nucleotides QEN71_RS29830 and QEN71_RS29835 are separated by 7 nucleotides QEN71_RS29835 and QEN71_RS29840 are separated by 128 nucleotides
QEN71_RS29825: QEN71_RS29825 - amino acid ABC transporter permease, at 32,168 to 32,908
_RS29825
QEN71_RS29830: QEN71_RS29830 - amino acid ABC transporter permease, at 32,905 to 33,636
_RS29830
QEN71_RS29835: QEN71_RS29835 - ABC transporter substrate-binding protein, at 33,644 to 34,462
_RS29835
QEN71_RS29840: QEN71_RS29840 - efflux transporter outer membrane subunit, at 34,591 to 36,084
_RS29840
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.874 kb on + strand at 32.991 kb on - strand, within QEN71_RS29830 at 33.060 kb on - strand, within QEN71_RS29830 at 33.119 kb on + strand, within QEN71_RS29830 at 33.119 kb on + strand, within QEN71_RS29830 at 33.120 kb on - strand, within QEN71_RS29830 at 33.195 kb on + strand, within QEN71_RS29830 at 33.221 kb on + strand, within QEN71_RS29830 at 33.221 kb on + strand, within QEN71_RS29830 at 33.284 kb on + strand, within QEN71_RS29830 at 33.419 kb on + strand, within QEN71_RS29830 at 33.453 kb on + strand, within QEN71_RS29830 at 33.453 kb on + strand, within QEN71_RS29830 at 33.470 kb on + strand, within QEN71_RS29830 at 33.611 kb on + strand at 33.764 kb on - strand, within QEN71_RS29835 at 33.967 kb on - strand, within QEN71_RS29835 at 34.113 kb on + strand, within QEN71_RS29835 at 34.275 kb on + strand, within QEN71_RS29835 at 34.482 kb on + strand at 34.509 kb on + strand at 34.569 kb on + strand at 34.569 kb on + strand at 34.570 kb on - strand at 34.570 kb on - strand at 34.592 kb on + strand at 34.592 kb on + strand at 34.592 kb on + strand at 34.593 kb on - strand at 34.688 kb on + strand at 34.688 kb on + strand at 34.865 kb on + strand, within QEN71_RS29840 at 34.866 kb on - strand, within QEN71_RS29840 at 34.928 kb on + strand, within QEN71_RS29840 at 35.079 kb on + strand, within QEN71_RS29840 at 35.079 kb on + strand, within QEN71_RS29840 at 35.093 kb on + strand, within QEN71_RS29840 at 35.094 kb on - strand, within QEN71_RS29840 at 35.126 kb on + strand, within QEN71_RS29840 at 35.126 kb on + strand, within QEN71_RS29840 at 35.127 kb on - strand, within QEN71_RS29840 at 35.291 kb on + strand, within QEN71_RS29840 at 35.372 kb on + strand, within QEN71_RS29840
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 32,874 + +0.8 32,991 - QEN71_RS29830 0.12 -0.1 33,060 - QEN71_RS29830 0.21 +0.2 33,119 + QEN71_RS29830 0.29 +0.4 33,119 + QEN71_RS29830 0.29 -0.3 33,120 - QEN71_RS29830 0.29 -1.0 33,195 + QEN71_RS29830 0.40 +2.5 33,221 + QEN71_RS29830 0.43 -0.3 33,221 + QEN71_RS29830 0.43 -0.5 33,284 + QEN71_RS29830 0.52 -0.8 33,419 + QEN71_RS29830 0.70 -0.3 33,453 + QEN71_RS29830 0.75 +1.2 33,453 + QEN71_RS29830 0.75 -0.6 33,470 + QEN71_RS29830 0.77 -0.6 33,611 + -0.2 33,764 - QEN71_RS29835 0.15 +0.8 33,967 - QEN71_RS29835 0.39 -1.5 34,113 + QEN71_RS29835 0.57 -0.3 34,275 + QEN71_RS29835 0.77 -1.3 34,482 + -0.0 34,509 + -2.1 34,569 + +0.2 34,569 + +0.4 34,570 - +0.4 34,570 - +0.2 34,592 + -0.3 34,592 + +0.4 34,592 + -0.3 34,593 - -0.3 34,688 + +0.3 34,688 + -0.6 34,865 + QEN71_RS29840 0.18 -0.4 34,866 - QEN71_RS29840 0.18 -0.6 34,928 + QEN71_RS29840 0.23 +0.3 35,079 + QEN71_RS29840 0.33 +0.8 35,079 + QEN71_RS29840 0.33 -0.3 35,093 + QEN71_RS29840 0.34 -0.3 35,094 - QEN71_RS29840 0.34 +0.2 35,126 + QEN71_RS29840 0.36 +1.1 35,126 + QEN71_RS29840 0.36 +1.3 35,127 - QEN71_RS29840 0.36 +0.4 35,291 + QEN71_RS29840 0.47 -0.0 35,372 + QEN71_RS29840 0.52 -1.1
Or see this region's nucleotide sequence