Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14910

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14905 and QEN71_RS14910 are separated by 152 nucleotidesQEN71_RS14910 and QEN71_RS14915 are separated by 171 nucleotides QEN71_RS14905: QEN71_RS14905 - porin, at 3,323,761 to 3,324,897 _RS14905 QEN71_RS14910: QEN71_RS14910 - hypothetical protein, at 3,325,050 to 3,325,184 _RS14910 QEN71_RS14915: QEN71_RS14915 - fatty acid desaturase, at 3,325,356 to 3,326,390 _RS14915 Position (kb) 3325 3326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3324.079 kb on + strand, within QEN71_RS14905at 3324.080 kb on - strand, within QEN71_RS14905at 3324.080 kb on - strand, within QEN71_RS14905at 3324.101 kb on - strand, within QEN71_RS14905at 3324.101 kb on - strand, within QEN71_RS14905at 3324.105 kb on + strand, within QEN71_RS14905at 3324.160 kb on + strand, within QEN71_RS14905at 3324.160 kb on + strand, within QEN71_RS14905at 3324.160 kb on + strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.161 kb on - strand, within QEN71_RS14905at 3324.184 kb on + strand, within QEN71_RS14905at 3324.184 kb on + strand, within QEN71_RS14905at 3324.185 kb on - strand, within QEN71_RS14905at 3324.185 kb on - strand, within QEN71_RS14905at 3324.185 kb on - strand, within QEN71_RS14905at 3324.185 kb on - strand, within QEN71_RS14905at 3324.229 kb on + strand, within QEN71_RS14905at 3324.250 kb on + strand, within QEN71_RS14905at 3324.251 kb on - strand, within QEN71_RS14905at 3324.289 kb on + strand, within QEN71_RS14905at 3324.289 kb on + strand, within QEN71_RS14905at 3324.289 kb on + strand, within QEN71_RS14905at 3324.290 kb on - strand, within QEN71_RS14905at 3324.290 kb on - strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.369 kb on + strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.370 kb on - strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.373 kb on + strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.374 kb on - strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.466 kb on + strand, within QEN71_RS14905at 3324.467 kb on - strand, within QEN71_RS14905at 3324.467 kb on - strand, within QEN71_RS14905at 3324.467 kb on - strand, within QEN71_RS14905at 3324.484 kb on + strand, within QEN71_RS14905at 3324.508 kb on + strand, within QEN71_RS14905at 3324.508 kb on + strand, within QEN71_RS14905at 3324.508 kb on + strand, within QEN71_RS14905at 3324.508 kb on + strand, within QEN71_RS14905at 3324.509 kb on - strand, within QEN71_RS14905at 3324.509 kb on - strand, within QEN71_RS14905at 3324.509 kb on - strand, within QEN71_RS14905at 3324.509 kb on - strand, within QEN71_RS14905at 3324.518 kb on - strand, within QEN71_RS14905at 3324.682 kb on + strand, within QEN71_RS14905at 3324.683 kb on - strand, within QEN71_RS14905at 3324.685 kb on + strand, within QEN71_RS14905at 3324.686 kb on - strand, within QEN71_RS14905at 3324.743 kb on - strand, within QEN71_RS14905at 3324.766 kb on + strand, within QEN71_RS14905at 3324.793 kb on + strandat 3324.793 kb on + strandat 3324.793 kb on + strandat 3324.794 kb on - strandat 3324.794 kb on - strandat 3324.794 kb on - strandat 3324.794 kb on - strandat 3324.794 kb on - strandat 3324.975 kb on + strandat 3324.976 kb on - strandat 3324.988 kb on + strandat 3324.989 kb on - strandat 3324.989 kb on - strandat 3324.997 kb on + strandat 3324.997 kb on + strandat 3324.998 kb on - strandat 3324.998 kb on - strandat 3324.998 kb on - strandat 3324.998 kb on - strandat 3324.999 kb on + strandat 3324.999 kb on + strandat 3324.999 kb on + strandat 3324.999 kb on + strandat 3324.999 kb on + strandat 3325.000 kb on - strandat 3325.000 kb on - strandat 3325.000 kb on - strandat 3325.000 kb on - strandat 3325.000 kb on - strandat 3325.000 kb on - strandat 3325.000 kb on - strandat 3325.015 kb on - strandat 3325.044 kb on - strandat 3325.044 kb on - strandat 3325.044 kb on - strandat 3325.104 kb on + strand, within QEN71_RS14910at 3325.104 kb on + strand, within QEN71_RS14910at 3325.105 kb on - strand, within QEN71_RS14910at 3325.105 kb on - strand, within QEN71_RS14910at 3325.183 kb on - strandat 3325.274 kb on + strandat 3325.275 kb on - strandat 3325.275 kb on - strandat 3325.446 kb on + strandat 3325.446 kb on + strandat 3325.447 kb on - strandat 3325.447 kb on - strandat 3325.608 kb on + strand, within QEN71_RS14915at 3325.620 kb on + strand, within QEN71_RS14915at 3325.620 kb on + strand, within QEN71_RS14915at 3325.620 kb on + strand, within QEN71_RS14915at 3325.620 kb on + strand, within QEN71_RS14915at 3325.621 kb on - strand, within QEN71_RS14915at 3325.621 kb on - strand, within QEN71_RS14915at 3325.621 kb on - strand, within QEN71_RS14915at 3325.698 kb on + strand, within QEN71_RS14915at 3325.698 kb on + strand, within QEN71_RS14915at 3325.698 kb on + strand, within QEN71_RS14915at 3325.698 kb on + strand, within QEN71_RS14915at 3325.699 kb on - strand, within QEN71_RS14915at 3325.699 kb on - strand, within QEN71_RS14915at 3325.734 kb on + strand, within QEN71_RS14915at 3325.735 kb on - strand, within QEN71_RS14915at 3325.776 kb on + strand, within QEN71_RS14915at 3325.776 kb on + strand, within QEN71_RS14915at 3325.776 kb on + strand, within QEN71_RS14915at 3325.776 kb on + strand, within QEN71_RS14915at 3325.776 kb on + strand, within QEN71_RS14915at 3325.776 kb on + strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.777 kb on - strand, within QEN71_RS14915at 3325.977 kb on + strand, within QEN71_RS14915at 3325.977 kb on + strand, within QEN71_RS14915at 3325.977 kb on + strand, within QEN71_RS14915at 3325.978 kb on - strand, within QEN71_RS14915at 3326.065 kb on - strand, within QEN71_RS14915at 3326.065 kb on - strand, within QEN71_RS14915at 3326.184 kb on + strand, within QEN71_RS14915

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,324,079 + QEN71_RS14905 0.28 -0.5
3,324,080 - QEN71_RS14905 0.28 +0.3
3,324,080 - QEN71_RS14905 0.28 -2.0
3,324,101 - QEN71_RS14905 0.30 -0.9
3,324,101 - QEN71_RS14905 0.30 -1.6
3,324,105 + QEN71_RS14905 0.30 -1.2
3,324,160 + QEN71_RS14905 0.35 -0.8
3,324,160 + QEN71_RS14905 0.35 +0.2
3,324,160 + QEN71_RS14905 0.35 -0.5
3,324,161 - QEN71_RS14905 0.35 +0.6
3,324,161 - QEN71_RS14905 0.35 -1.0
3,324,161 - QEN71_RS14905 0.35 +0.7
3,324,161 - QEN71_RS14905 0.35 +0.0
3,324,161 - QEN71_RS14905 0.35 -0.0
3,324,161 - QEN71_RS14905 0.35 -0.3
3,324,161 - QEN71_RS14905 0.35 -0.6
3,324,161 - QEN71_RS14905 0.35 -0.9
3,324,184 + QEN71_RS14905 0.37 -0.2
3,324,184 + QEN71_RS14905 0.37 -1.6
3,324,185 - QEN71_RS14905 0.37 +1.2
3,324,185 - QEN71_RS14905 0.37 -0.1
3,324,185 - QEN71_RS14905 0.37 -0.6
3,324,185 - QEN71_RS14905 0.37 +1.7
3,324,229 + QEN71_RS14905 0.41 +0.4
3,324,250 + QEN71_RS14905 0.43 +0.4
3,324,251 - QEN71_RS14905 0.43 -1.0
3,324,289 + QEN71_RS14905 0.46 -0.9
3,324,289 + QEN71_RS14905 0.46 -0.6
3,324,289 + QEN71_RS14905 0.46 +0.6
3,324,290 - QEN71_RS14905 0.47 -2.4
3,324,290 - QEN71_RS14905 0.47 -0.6
3,324,369 + QEN71_RS14905 0.53 +2.0
3,324,369 + QEN71_RS14905 0.53 -0.2
3,324,369 + QEN71_RS14905 0.53 -0.6
3,324,369 + QEN71_RS14905 0.53 +0.1
3,324,369 + QEN71_RS14905 0.53 -0.8
3,324,369 + QEN71_RS14905 0.53 -0.4
3,324,369 + QEN71_RS14905 0.53 +0.5
3,324,369 + QEN71_RS14905 0.53 +0.3
3,324,370 - QEN71_RS14905 0.54 +0.1
3,324,370 - QEN71_RS14905 0.54 -0.9
3,324,370 - QEN71_RS14905 0.54 -0.5
3,324,370 - QEN71_RS14905 0.54 -0.0
3,324,370 - QEN71_RS14905 0.54 -0.2
3,324,370 - QEN71_RS14905 0.54 -0.2
3,324,370 - QEN71_RS14905 0.54 +1.0
3,324,370 - QEN71_RS14905 0.54 -2.0
3,324,370 - QEN71_RS14905 0.54 +0.5
3,324,373 + QEN71_RS14905 0.54 -0.4
3,324,373 + QEN71_RS14905 0.54 -1.5
3,324,373 + QEN71_RS14905 0.54 +0.5
3,324,373 + QEN71_RS14905 0.54 -1.5
3,324,373 + QEN71_RS14905 0.54 +0.3
3,324,373 + QEN71_RS14905 0.54 -0.5
3,324,373 + QEN71_RS14905 0.54 -0.4
3,324,373 + QEN71_RS14905 0.54 -1.1
3,324,374 - QEN71_RS14905 0.54 -0.2
3,324,374 - QEN71_RS14905 0.54 -0.6
3,324,374 - QEN71_RS14905 0.54 +0.4
3,324,374 - QEN71_RS14905 0.54 -0.5
3,324,374 - QEN71_RS14905 0.54 -1.3
3,324,374 - QEN71_RS14905 0.54 -1.3
3,324,374 - QEN71_RS14905 0.54 +0.3
3,324,374 - QEN71_RS14905 0.54 -0.1
3,324,466 + QEN71_RS14905 0.62 +0.2
3,324,466 + QEN71_RS14905 0.62 -1.3
3,324,466 + QEN71_RS14905 0.62 +0.2
3,324,466 + QEN71_RS14905 0.62 -0.6
3,324,466 + QEN71_RS14905 0.62 -0.2
3,324,466 + QEN71_RS14905 0.62 -0.2
3,324,466 + QEN71_RS14905 0.62 -0.3
3,324,467 - QEN71_RS14905 0.62 +0.5
3,324,467 - QEN71_RS14905 0.62 +0.6
3,324,467 - QEN71_RS14905 0.62 -0.1
3,324,484 + QEN71_RS14905 0.64 -2.1
3,324,508 + QEN71_RS14905 0.66 -0.7
3,324,508 + QEN71_RS14905 0.66 +0.1
3,324,508 + QEN71_RS14905 0.66 -0.3
3,324,508 + QEN71_RS14905 0.66 -0.3
3,324,509 - QEN71_RS14905 0.66 +0.7
3,324,509 - QEN71_RS14905 0.66 +0.3
3,324,509 - QEN71_RS14905 0.66 +0.2
3,324,509 - QEN71_RS14905 0.66 -3.0
3,324,518 - QEN71_RS14905 0.67 +0.1
3,324,682 + QEN71_RS14905 0.81 -0.5
3,324,683 - QEN71_RS14905 0.81 -1.7
3,324,685 + QEN71_RS14905 0.81 -0.0
3,324,686 - QEN71_RS14905 0.81 -0.1
3,324,743 - QEN71_RS14905 0.86 -0.9
3,324,766 + QEN71_RS14905 0.88 -0.3
3,324,793 + -0.5
3,324,793 + -0.5
3,324,793 + +0.6
3,324,794 - +0.0
3,324,794 - +1.1
3,324,794 - +1.2
3,324,794 - -0.8
3,324,794 - +1.4
3,324,975 + -0.8
3,324,976 - +1.3
3,324,988 + +0.1
3,324,989 - -0.2
3,324,989 - +0.4
3,324,997 + +0.1
3,324,997 + +0.1
3,324,998 - +0.2
3,324,998 - -0.5
3,324,998 - -1.1
3,324,998 - -0.3
3,324,999 + -1.0
3,324,999 + +0.8
3,324,999 + +0.8
3,324,999 + -0.5
3,324,999 + +0.5
3,325,000 - -0.1
3,325,000 - +0.0
3,325,000 - +0.5
3,325,000 - -1.4
3,325,000 - +1.1
3,325,000 - -2.5
3,325,000 - -1.6
3,325,015 - +0.3
3,325,044 - +0.3
3,325,044 - -0.1
3,325,044 - +1.5
3,325,104 + QEN71_RS14910 0.40 -1.1
3,325,104 + QEN71_RS14910 0.40 +1.5
3,325,105 - QEN71_RS14910 0.41 -0.4
3,325,105 - QEN71_RS14910 0.41 -0.2
3,325,183 - -0.1
3,325,274 + -0.9
3,325,275 - -1.9
3,325,275 - +0.9
3,325,446 + +0.9
3,325,446 + +0.1
3,325,447 - -0.0
3,325,447 - +0.3
3,325,608 + QEN71_RS14915 0.24 +0.6
3,325,620 + QEN71_RS14915 0.26 +0.3
3,325,620 + QEN71_RS14915 0.26 +0.1
3,325,620 + QEN71_RS14915 0.26 -2.4
3,325,620 + QEN71_RS14915 0.26 -0.3
3,325,621 - QEN71_RS14915 0.26 -0.4
3,325,621 - QEN71_RS14915 0.26 -0.8
3,325,621 - QEN71_RS14915 0.26 -0.3
3,325,698 + QEN71_RS14915 0.33 -0.3
3,325,698 + QEN71_RS14915 0.33 -0.8
3,325,698 + QEN71_RS14915 0.33 +0.9
3,325,698 + QEN71_RS14915 0.33 -2.2
3,325,699 - QEN71_RS14915 0.33 -0.4
3,325,699 - QEN71_RS14915 0.33 +0.5
3,325,734 + QEN71_RS14915 0.37 -0.6
3,325,735 - QEN71_RS14915 0.37 -0.3
3,325,776 + QEN71_RS14915 0.41 +1.4
3,325,776 + QEN71_RS14915 0.41 -0.6
3,325,776 + QEN71_RS14915 0.41 -1.3
3,325,776 + QEN71_RS14915 0.41 -0.8
3,325,776 + QEN71_RS14915 0.41 -0.9
3,325,776 + QEN71_RS14915 0.41 +2.0
3,325,777 - QEN71_RS14915 0.41 +0.5
3,325,777 - QEN71_RS14915 0.41 -0.5
3,325,777 - QEN71_RS14915 0.41 +1.3
3,325,777 - QEN71_RS14915 0.41 +0.1
3,325,777 - QEN71_RS14915 0.41 +0.2
3,325,777 - QEN71_RS14915 0.41 -0.1
3,325,777 - QEN71_RS14915 0.41 -1.2
3,325,977 + QEN71_RS14915 0.60 +0.5
3,325,977 + QEN71_RS14915 0.60 -0.2
3,325,977 + QEN71_RS14915 0.60 +1.9
3,325,978 - QEN71_RS14915 0.60 -0.5
3,326,065 - QEN71_RS14915 0.69 +0.2
3,326,065 - QEN71_RS14915 0.69 -0.8
3,326,184 + QEN71_RS14915 0.80 -0.0

Or see this region's nucleotide sequence