Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS11720

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS11715 and QEN71_RS11720 are separated by 70 nucleotidesQEN71_RS11720 and QEN71_RS11725 are separated by 334 nucleotides QEN71_RS11715: QEN71_RS11715 - ABC transporter substrate-binding protein, at 2,609,428 to 2,610,459 _RS11715 QEN71_RS11720: QEN71_RS11720 - flavin reductase, at 2,610,530 to 2,610,961 _RS11720 QEN71_RS11725: QEN71_RS11725 - GntR family transcriptional regulator, at 2,611,296 to 2,611,982 _RS11725 Position (kb) 2610 2611Strain fitness (log2 ratio) -2 -1 0 1 2at 2609.809 kb on + strand, within QEN71_RS11715at 2609.809 kb on + strand, within QEN71_RS11715at 2609.810 kb on - strand, within QEN71_RS11715at 2609.810 kb on - strand, within QEN71_RS11715at 2609.970 kb on - strand, within QEN71_RS11715at 2609.970 kb on - strand, within QEN71_RS11715at 2610.056 kb on + strand, within QEN71_RS11715at 2610.056 kb on + strand, within QEN71_RS11715at 2610.056 kb on + strand, within QEN71_RS11715at 2610.074 kb on + strand, within QEN71_RS11715at 2610.074 kb on + strand, within QEN71_RS11715at 2610.077 kb on + strand, within QEN71_RS11715at 2610.077 kb on + strand, within QEN71_RS11715at 2610.077 kb on + strand, within QEN71_RS11715at 2610.077 kb on + strand, within QEN71_RS11715at 2610.077 kb on + strand, within QEN71_RS11715at 2610.077 kb on + strand, within QEN71_RS11715at 2610.143 kb on + strand, within QEN71_RS11715at 2610.183 kb on - strand, within QEN71_RS11715at 2610.582 kb on + strand, within QEN71_RS11720at 2610.582 kb on + strand, within QEN71_RS11720at 2610.582 kb on + strand, within QEN71_RS11720at 2610.582 kb on + strand, within QEN71_RS11720at 2610.582 kb on + strand, within QEN71_RS11720at 2610.582 kb on + strand, within QEN71_RS11720at 2610.583 kb on - strand, within QEN71_RS11720at 2610.583 kb on - strand, within QEN71_RS11720at 2610.583 kb on - strand, within QEN71_RS11720at 2610.583 kb on - strand, within QEN71_RS11720at 2610.583 kb on - strand, within QEN71_RS11720at 2610.583 kb on - strand, within QEN71_RS11720at 2610.618 kb on + strand, within QEN71_RS11720at 2610.619 kb on - strand, within QEN71_RS11720at 2610.741 kb on + strand, within QEN71_RS11720at 2611.228 kb on + strandat 2611.228 kb on + strandat 2611.228 kb on + strandat 2611.228 kb on + strandat 2611.228 kb on + strandat 2611.229 kb on - strandat 2611.229 kb on - strandat 2611.229 kb on - strandat 2611.270 kb on + strandat 2611.270 kb on + strandat 2611.270 kb on + strandat 2611.270 kb on + strandat 2611.270 kb on + strandat 2611.271 kb on - strandat 2611.271 kb on - strandat 2611.271 kb on - strandat 2611.273 kb on + strandat 2611.273 kb on + strandat 2611.273 kb on + strandat 2611.295 kb on + strandat 2611.295 kb on + strandat 2611.295 kb on + strandat 2611.295 kb on + strandat 2611.295 kb on + strandat 2611.296 kb on - strandat 2611.296 kb on - strandat 2611.296 kb on - strandat 2611.296 kb on - strandat 2611.307 kb on + strandat 2611.307 kb on + strandat 2611.307 kb on + strandat 2611.308 kb on - strandat 2611.349 kb on - strandat 2611.349 kb on - strandat 2611.380 kb on + strand, within QEN71_RS11725at 2611.380 kb on + strand, within QEN71_RS11725at 2611.380 kb on + strand, within QEN71_RS11725at 2611.495 kb on + strand, within QEN71_RS11725at 2611.495 kb on + strand, within QEN71_RS11725at 2611.495 kb on + strand, within QEN71_RS11725at 2611.495 kb on + strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.496 kb on - strand, within QEN71_RS11725at 2611.693 kb on + strand, within QEN71_RS11725at 2611.713 kb on + strand, within QEN71_RS11725at 2611.724 kb on - strand, within QEN71_RS11725at 2611.913 kb on + strand, within QEN71_RS11725at 2611.914 kb on - strandat 2611.914 kb on - strandat 2611.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,609,809 + QEN71_RS11715 0.37 +0.1
2,609,809 + QEN71_RS11715 0.37 -1.1
2,609,810 - QEN71_RS11715 0.37 +0.3
2,609,810 - QEN71_RS11715 0.37 +0.3
2,609,970 - QEN71_RS11715 0.53 -1.9
2,609,970 - QEN71_RS11715 0.53 +1.2
2,610,056 + QEN71_RS11715 0.61 -0.6
2,610,056 + QEN71_RS11715 0.61 -0.1
2,610,056 + QEN71_RS11715 0.61 +1.6
2,610,074 + QEN71_RS11715 0.63 -0.8
2,610,074 + QEN71_RS11715 0.63 -1.7
2,610,077 + QEN71_RS11715 0.63 +1.4
2,610,077 + QEN71_RS11715 0.63 -0.2
2,610,077 + QEN71_RS11715 0.63 -0.3
2,610,077 + QEN71_RS11715 0.63 -0.9
2,610,077 + QEN71_RS11715 0.63 +0.5
2,610,077 + QEN71_RS11715 0.63 -0.8
2,610,143 + QEN71_RS11715 0.69 -1.6
2,610,183 - QEN71_RS11715 0.73 +0.7
2,610,582 + QEN71_RS11720 0.12 +1.9
2,610,582 + QEN71_RS11720 0.12 +0.1
2,610,582 + QEN71_RS11720 0.12 -0.9
2,610,582 + QEN71_RS11720 0.12 -0.1
2,610,582 + QEN71_RS11720 0.12 -1.9
2,610,582 + QEN71_RS11720 0.12 -0.8
2,610,583 - QEN71_RS11720 0.12 +0.6
2,610,583 - QEN71_RS11720 0.12 +0.7
2,610,583 - QEN71_RS11720 0.12 -0.8
2,610,583 - QEN71_RS11720 0.12 +1.9
2,610,583 - QEN71_RS11720 0.12 -2.1
2,610,583 - QEN71_RS11720 0.12 -0.9
2,610,618 + QEN71_RS11720 0.20 +0.6
2,610,619 - QEN71_RS11720 0.21 +0.5
2,610,741 + QEN71_RS11720 0.49 -0.3
2,611,228 + -0.4
2,611,228 + +0.4
2,611,228 + -1.0
2,611,228 + -0.9
2,611,228 + +1.0
2,611,229 - -0.3
2,611,229 - -0.0
2,611,229 - +0.4
2,611,270 + -0.1
2,611,270 + +0.2
2,611,270 + -0.7
2,611,270 + -0.4
2,611,270 + -0.2
2,611,271 - -0.6
2,611,271 - -0.1
2,611,271 - +0.4
2,611,273 + -2.4
2,611,273 + -1.3
2,611,273 + +0.2
2,611,295 + +0.5
2,611,295 + -0.3
2,611,295 + -0.5
2,611,295 + +1.6
2,611,295 + +0.3
2,611,296 - +1.3
2,611,296 - -0.6
2,611,296 - +1.4
2,611,296 - -0.3
2,611,307 + -1.0
2,611,307 + -0.3
2,611,307 + -0.9
2,611,308 - -0.4
2,611,349 - -0.6
2,611,349 - -0.7
2,611,380 + QEN71_RS11725 0.12 -0.4
2,611,380 + QEN71_RS11725 0.12 -0.6
2,611,380 + QEN71_RS11725 0.12 -0.6
2,611,495 + QEN71_RS11725 0.29 +0.5
2,611,495 + QEN71_RS11725 0.29 -1.1
2,611,495 + QEN71_RS11725 0.29 -0.3
2,611,495 + QEN71_RS11725 0.29 -0.9
2,611,496 - QEN71_RS11725 0.29 -0.1
2,611,496 - QEN71_RS11725 0.29 +0.3
2,611,496 - QEN71_RS11725 0.29 -1.4
2,611,496 - QEN71_RS11725 0.29 -0.9
2,611,496 - QEN71_RS11725 0.29 +0.4
2,611,496 - QEN71_RS11725 0.29 -0.3
2,611,496 - QEN71_RS11725 0.29 -1.3
2,611,693 + QEN71_RS11725 0.58 -0.3
2,611,713 + QEN71_RS11725 0.61 +0.3
2,611,724 - QEN71_RS11725 0.62 +0.1
2,611,913 + QEN71_RS11725 0.90 -0.1
2,611,914 - +0.1
2,611,914 - +0.4
2,611,914 - -0.2

Or see this region's nucleotide sequence