Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04660

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04650 and QEN71_RS04655 are separated by 45 nucleotidesQEN71_RS04655 and QEN71_RS04660 are separated by 351 nucleotidesQEN71_RS04660 and QEN71_RS04665 are separated by 109 nucleotides QEN71_RS04650: QEN71_RS04650 - hypothetical protein, at 1,018,376 to 1,018,549 _RS04650 QEN71_RS04655: QEN71_RS04655 - elongation factor P, at 1,018,595 to 1,019,152 _RS04655 QEN71_RS04660: QEN71_RS04660 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 1,019,504 to 1,020,685 _RS04660 QEN71_RS04665: QEN71_RS04665 - excinuclease ABC subunit UvrC, at 1,020,795 to 1,023,005 _RS04665 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1018.534 kb on - strandat 1018.534 kb on - strandat 1018.565 kb on - strandat 1018.565 kb on - strandat 1018.597 kb on - strandat 1018.597 kb on - strandat 1019.166 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.173 kb on - strandat 1019.203 kb on - strandat 1019.203 kb on - strandat 1019.210 kb on - strandat 1019.210 kb on - strandat 1019.210 kb on - strandat 1019.402 kb on - strandat 1019.402 kb on - strandat 1019.402 kb on - strandat 1019.402 kb on - strandat 1019.402 kb on - strandat 1019.510 kb on + strandat 1020.725 kb on - strandat 1020.725 kb on - strandat 1020.725 kb on - strandat 1020.725 kb on - strandat 1020.725 kb on - strandat 1020.725 kb on - strandat 1020.738 kb on + strandat 1020.738 kb on + strandat 1020.738 kb on + strandat 1020.739 kb on - strandat 1020.739 kb on - strandat 1020.739 kb on - strandat 1020.739 kb on - strandat 1020.767 kb on + strandat 1020.942 kb on + strandat 1020.942 kb on + strandat 1020.942 kb on + strandat 1020.943 kb on - strandat 1020.943 kb on - strandat 1020.948 kb on + strandat 1020.948 kb on + strandat 1020.948 kb on + strandat 1020.949 kb on - strandat 1020.949 kb on - strandat 1020.949 kb on - strandat 1020.951 kb on + strandat 1020.951 kb on + strandat 1020.951 kb on + strandat 1020.951 kb on + strandat 1020.952 kb on - strandat 1020.952 kb on - strandat 1020.952 kb on - strandat 1020.952 kb on - strandat 1020.975 kb on + strandat 1020.975 kb on + strandat 1020.975 kb on + strandat 1020.976 kb on - strandat 1021.017 kb on + strand, within QEN71_RS04665at 1021.017 kb on + strand, within QEN71_RS04665at 1021.017 kb on + strand, within QEN71_RS04665at 1021.017 kb on + strand, within QEN71_RS04665at 1021.018 kb on - strand, within QEN71_RS04665at 1021.018 kb on - strand, within QEN71_RS04665at 1021.018 kb on - strand, within QEN71_RS04665at 1021.018 kb on - strand, within QEN71_RS04665at 1021.018 kb on - strand, within QEN71_RS04665at 1021.155 kb on + strand, within QEN71_RS04665at 1021.156 kb on - strand, within QEN71_RS04665at 1021.156 kb on - strand, within QEN71_RS04665at 1021.191 kb on + strand, within QEN71_RS04665at 1021.191 kb on + strand, within QEN71_RS04665at 1021.192 kb on - strand, within QEN71_RS04665at 1021.192 kb on - strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.230 kb on + strand, within QEN71_RS04665at 1021.231 kb on - strand, within QEN71_RS04665at 1021.231 kb on - strand, within QEN71_RS04665at 1021.231 kb on - strand, within QEN71_RS04665at 1021.231 kb on - strand, within QEN71_RS04665at 1021.231 kb on - strand, within QEN71_RS04665at 1021.234 kb on - strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.263 kb on + strand, within QEN71_RS04665at 1021.358 kb on + strand, within QEN71_RS04665at 1021.358 kb on + strand, within QEN71_RS04665at 1021.359 kb on - strand, within QEN71_RS04665at 1021.359 kb on - strand, within QEN71_RS04665at 1021.440 kb on + strand, within QEN71_RS04665at 1021.440 kb on + strand, within QEN71_RS04665at 1021.441 kb on - strand, within QEN71_RS04665at 1021.441 kb on - strand, within QEN71_RS04665at 1021.441 kb on - strand, within QEN71_RS04665at 1021.441 kb on - strand, within QEN71_RS04665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,018,534 - -0.6
1,018,534 - +0.9
1,018,565 - -0.9
1,018,565 - -0.8
1,018,597 - +0.3
1,018,597 - +0.7
1,019,166 - +0.5
1,019,173 - -0.0
1,019,173 - -1.1
1,019,173 - -0.3
1,019,173 - -0.7
1,019,173 - -0.3
1,019,173 - -0.4
1,019,173 - -0.9
1,019,173 - -0.7
1,019,203 - -0.1
1,019,203 - +0.1
1,019,210 - -0.3
1,019,210 - -0.3
1,019,210 - +0.3
1,019,402 - +0.0
1,019,402 - -0.7
1,019,402 - +0.7
1,019,402 - -0.4
1,019,402 - +0.2
1,019,510 + -0.8
1,020,725 - -0.3
1,020,725 - -0.5
1,020,725 - -1.5
1,020,725 - +0.1
1,020,725 - +0.9
1,020,725 - -0.8
1,020,738 + -0.2
1,020,738 + -2.5
1,020,738 + +0.6
1,020,739 - +0.4
1,020,739 - -0.2
1,020,739 - +0.1
1,020,739 - -0.1
1,020,767 + +0.1
1,020,942 + +0.1
1,020,942 + -0.3
1,020,942 + -0.0
1,020,943 - +0.4
1,020,943 - -2.1
1,020,948 + -0.3
1,020,948 + -1.3
1,020,948 + -3.1
1,020,949 - -1.2
1,020,949 - +1.7
1,020,949 - +1.2
1,020,951 + -0.7
1,020,951 + +0.1
1,020,951 + -2.1
1,020,951 + +1.4
1,020,952 - +1.4
1,020,952 - -0.3
1,020,952 - -0.9
1,020,952 - +0.7
1,020,975 + +1.0
1,020,975 + -1.2
1,020,975 + -1.3
1,020,976 - +1.8
1,021,017 + QEN71_RS04665 0.10 +0.8
1,021,017 + QEN71_RS04665 0.10 -0.9
1,021,017 + QEN71_RS04665 0.10 -0.8
1,021,017 + QEN71_RS04665 0.10 +0.7
1,021,018 - QEN71_RS04665 0.10 +0.7
1,021,018 - QEN71_RS04665 0.10 -0.3
1,021,018 - QEN71_RS04665 0.10 -0.2
1,021,018 - QEN71_RS04665 0.10 -0.8
1,021,018 - QEN71_RS04665 0.10 -0.1
1,021,155 + QEN71_RS04665 0.16 -0.3
1,021,156 - QEN71_RS04665 0.16 -0.7
1,021,156 - QEN71_RS04665 0.16 -0.9
1,021,191 + QEN71_RS04665 0.18 -1.0
1,021,191 + QEN71_RS04665 0.18 -1.3
1,021,192 - QEN71_RS04665 0.18 -0.6
1,021,192 - QEN71_RS04665 0.18 -0.3
1,021,230 + QEN71_RS04665 0.20 +0.5
1,021,230 + QEN71_RS04665 0.20 -0.2
1,021,230 + QEN71_RS04665 0.20 -0.3
1,021,230 + QEN71_RS04665 0.20 -0.5
1,021,230 + QEN71_RS04665 0.20 -0.3
1,021,230 + QEN71_RS04665 0.20 -0.4
1,021,230 + QEN71_RS04665 0.20 -2.1
1,021,231 - QEN71_RS04665 0.20 +0.4
1,021,231 - QEN71_RS04665 0.20 +0.3
1,021,231 - QEN71_RS04665 0.20 -0.6
1,021,231 - QEN71_RS04665 0.20 +0.7
1,021,231 - QEN71_RS04665 0.20 -2.9
1,021,234 - QEN71_RS04665 0.20 -0.3
1,021,263 + QEN71_RS04665 0.21 -0.1
1,021,263 + QEN71_RS04665 0.21 -0.9
1,021,263 + QEN71_RS04665 0.21 +1.2
1,021,263 + QEN71_RS04665 0.21 -2.2
1,021,263 + QEN71_RS04665 0.21 +0.2
1,021,263 + QEN71_RS04665 0.21 -1.7
1,021,263 + QEN71_RS04665 0.21 -0.3
1,021,358 + QEN71_RS04665 0.25 +1.2
1,021,358 + QEN71_RS04665 0.25 -0.8
1,021,359 - QEN71_RS04665 0.26 -0.2
1,021,359 - QEN71_RS04665 0.26 -1.1
1,021,440 + QEN71_RS04665 0.29 +0.4
1,021,440 + QEN71_RS04665 0.29 +1.7
1,021,441 - QEN71_RS04665 0.29 +0.1
1,021,441 - QEN71_RS04665 0.29 +1.5
1,021,441 - QEN71_RS04665 0.29 -0.4
1,021,441 - QEN71_RS04665 0.29 +0.9

Or see this region's nucleotide sequence