Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00440

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00435 and QEN71_RS00440 are separated by 379 nucleotidesQEN71_RS00440 and QEN71_RS00445 are separated by 26 nucleotidesQEN71_RS00445 and QEN71_RS00450 overlap by 17 nucleotidesQEN71_RS00450 and QEN71_RS00455 are separated by 214 nucleotides QEN71_RS00435: QEN71_RS00435 - DUF3857 and transglutaminase domain-containing protein, at 93,614 to 95,626 _RS00435 QEN71_RS00440: QEN71_RS00440 - PepSY-associated TM helix domain-containing protein, at 96,006 to 96,728 _RS00440 QEN71_RS00445: QEN71_RS00445 - XRE family transcriptional regulator, at 96,755 to 97,096 _RS00445 QEN71_RS00450: QEN71_RS00450 - type II toxin-antitoxin system RelE/ParE family toxin, at 97,080 to 97,454 _RS00450 QEN71_RS00455: QEN71_RS00455 - XdhC family protein, at 97,669 to 98,697 _RS00455 Position (kb) 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 95.025 kb on + strand, within QEN71_RS00435at 95.026 kb on - strand, within QEN71_RS00435at 95.026 kb on - strand, within QEN71_RS00435at 95.052 kb on + strand, within QEN71_RS00435at 95.052 kb on + strand, within QEN71_RS00435at 95.052 kb on + strand, within QEN71_RS00435at 95.052 kb on + strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.053 kb on - strand, within QEN71_RS00435at 95.304 kb on + strand, within QEN71_RS00435at 95.304 kb on + strand, within QEN71_RS00435at 95.304 kb on + strand, within QEN71_RS00435at 95.305 kb on - strand, within QEN71_RS00435at 95.352 kb on + strand, within QEN71_RS00435at 95.352 kb on + strand, within QEN71_RS00435at 95.352 kb on + strand, within QEN71_RS00435at 95.352 kb on + strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.353 kb on - strand, within QEN71_RS00435at 95.355 kb on + strand, within QEN71_RS00435at 95.355 kb on + strand, within QEN71_RS00435at 95.356 kb on - strand, within QEN71_RS00435at 95.356 kb on - strand, within QEN71_RS00435at 95.356 kb on - strand, within QEN71_RS00435at 95.356 kb on - strand, within QEN71_RS00435at 95.472 kb on + strandat 95.472 kb on + strandat 95.580 kb on + strandat 95.580 kb on + strandat 95.581 kb on - strandat 95.656 kb on + strandat 95.656 kb on + strandat 95.657 kb on - strandat 95.657 kb on - strandat 95.657 kb on - strandat 95.783 kb on + strandat 95.789 kb on + strandat 95.789 kb on + strandat 95.789 kb on + strandat 95.789 kb on + strandat 95.790 kb on - strandat 95.794 kb on - strandat 95.903 kb on - strandat 95.954 kb on + strandat 95.954 kb on + strandat 95.954 kb on + strandat 95.954 kb on + strandat 95.955 kb on - strandat 95.955 kb on - strandat 95.955 kb on - strandat 96.317 kb on + strand, within QEN71_RS00440at 96.317 kb on + strand, within QEN71_RS00440at 96.317 kb on + strand, within QEN71_RS00440at 96.317 kb on + strand, within QEN71_RS00440at 96.318 kb on - strand, within QEN71_RS00440at 96.318 kb on - strand, within QEN71_RS00440at 96.348 kb on - strand, within QEN71_RS00440at 96.348 kb on - strand, within QEN71_RS00440at 96.477 kb on + strand, within QEN71_RS00440at 96.477 kb on + strand, within QEN71_RS00440at 96.499 kb on + strand, within QEN71_RS00440at 96.593 kb on + strand, within QEN71_RS00440at 96.594 kb on - strand, within QEN71_RS00440at 96.670 kb on + strandat 96.671 kb on - strandat 96.860 kb on + strand, within QEN71_RS00445at 96.860 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.894 kb on + strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.895 kb on - strand, within QEN71_RS00445at 96.996 kb on + strand, within QEN71_RS00445at 96.996 kb on + strand, within QEN71_RS00445at 96.996 kb on + strand, within QEN71_RS00445at 96.996 kb on + strand, within QEN71_RS00445at 96.997 kb on - strand, within QEN71_RS00445at 96.997 kb on - strand, within QEN71_RS00445at 97.118 kb on + strand, within QEN71_RS00450at 97.118 kb on + strand, within QEN71_RS00450at 97.118 kb on + strand, within QEN71_RS00450at 97.118 kb on + strand, within QEN71_RS00450at 97.119 kb on - strand, within QEN71_RS00450at 97.119 kb on - strand, within QEN71_RS00450at 97.138 kb on + strand, within QEN71_RS00450at 97.139 kb on - strand, within QEN71_RS00450at 97.171 kb on + strand, within QEN71_RS00450at 97.172 kb on - strand, within QEN71_RS00450at 97.241 kb on - strand, within QEN71_RS00450at 97.241 kb on - strand, within QEN71_RS00450at 97.241 kb on - strand, within QEN71_RS00450at 97.241 kb on - strand, within QEN71_RS00450at 97.243 kb on - strand, within QEN71_RS00450at 97.253 kb on - strand, within QEN71_RS00450at 97.278 kb on + strand, within QEN71_RS00450at 97.279 kb on - strand, within QEN71_RS00450at 97.308 kb on + strand, within QEN71_RS00450at 97.308 kb on + strand, within QEN71_RS00450at 97.309 kb on - strand, within QEN71_RS00450at 97.309 kb on - strand, within QEN71_RS00450at 97.311 kb on + strand, within QEN71_RS00450at 97.461 kb on + strandat 97.529 kb on - strandat 97.529 kb on - strandat 97.564 kb on - strandat 97.604 kb on - strandat 97.604 kb on - strandat 97.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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95,025 + QEN71_RS00435 0.70 -1.1
95,026 - QEN71_RS00435 0.70 -0.3
95,026 - QEN71_RS00435 0.70 +1.0
95,052 + QEN71_RS00435 0.71 -0.1
95,052 + QEN71_RS00435 0.71 -0.6
95,052 + QEN71_RS00435 0.71 +0.5
95,052 + QEN71_RS00435 0.71 +0.1
95,053 - QEN71_RS00435 0.71 +2.4
95,053 - QEN71_RS00435 0.71 +0.6
95,053 - QEN71_RS00435 0.71 -0.8
95,053 - QEN71_RS00435 0.71 +0.2
95,053 - QEN71_RS00435 0.71 +1.4
95,053 - QEN71_RS00435 0.71 -0.8
95,053 - QEN71_RS00435 0.71 -0.8
95,304 + QEN71_RS00435 0.84 +0.2
95,304 + QEN71_RS00435 0.84 +0.4
95,304 + QEN71_RS00435 0.84 +0.0
95,305 - QEN71_RS00435 0.84 +0.4
95,352 + QEN71_RS00435 0.86 -0.3
95,352 + QEN71_RS00435 0.86 -0.4
95,352 + QEN71_RS00435 0.86 -0.7
95,352 + QEN71_RS00435 0.86 +1.0
95,353 - QEN71_RS00435 0.86 +0.6
95,353 - QEN71_RS00435 0.86 -0.5
95,353 - QEN71_RS00435 0.86 -0.4
95,353 - QEN71_RS00435 0.86 -0.3
95,353 - QEN71_RS00435 0.86 -1.1
95,353 - QEN71_RS00435 0.86 +0.5
95,353 - QEN71_RS00435 0.86 -0.7
95,353 - QEN71_RS00435 0.86 +0.6
95,355 + QEN71_RS00435 0.86 -2.1
95,355 + QEN71_RS00435 0.86 -1.2
95,356 - QEN71_RS00435 0.87 +0.2
95,356 - QEN71_RS00435 0.87 +0.0
95,356 - QEN71_RS00435 0.87 -2.4
95,356 - QEN71_RS00435 0.87 +0.2
95,472 + +1.8
95,472 + +0.4
95,580 + -1.1
95,580 + +0.4
95,581 - -0.1
95,656 + -0.3
95,656 + +0.2
95,657 - -0.0
95,657 - -1.6
95,657 - -0.8
95,783 + +0.2
95,789 + +0.8
95,789 + -0.2
95,789 + -0.8
95,789 + -0.0
95,790 - -0.2
95,794 - +0.6
95,903 - -0.5
95,954 + -0.1
95,954 + -0.2
95,954 + +0.1
95,954 + -0.3
95,955 - +0.0
95,955 - -0.1
95,955 - +1.6
96,317 + QEN71_RS00440 0.43 -0.9
96,317 + QEN71_RS00440 0.43 -0.8
96,317 + QEN71_RS00440 0.43 +2.3
96,317 + QEN71_RS00440 0.43 -1.0
96,318 - QEN71_RS00440 0.43 +1.6
96,318 - QEN71_RS00440 0.43 -0.3
96,348 - QEN71_RS00440 0.47 +0.1
96,348 - QEN71_RS00440 0.47 -1.0
96,477 + QEN71_RS00440 0.65 -0.4
96,477 + QEN71_RS00440 0.65 -0.6
96,499 + QEN71_RS00440 0.68 -0.4
96,593 + QEN71_RS00440 0.81 +0.2
96,594 - QEN71_RS00440 0.81 +0.7
96,670 + -1.0
96,671 - +0.6
96,860 + QEN71_RS00445 0.31 +0.6
96,860 + QEN71_RS00445 0.31 -0.3
96,894 + QEN71_RS00445 0.41 +1.8
96,894 + QEN71_RS00445 0.41 +0.3
96,894 + QEN71_RS00445 0.41 -1.0
96,894 + QEN71_RS00445 0.41 -0.3
96,894 + QEN71_RS00445 0.41 +0.1
96,894 + QEN71_RS00445 0.41 +0.8
96,894 + QEN71_RS00445 0.41 +0.4
96,894 + QEN71_RS00445 0.41 -1.2
96,894 + QEN71_RS00445 0.41 -0.1
96,894 + QEN71_RS00445 0.41 +0.8
96,894 + QEN71_RS00445 0.41 -0.3
96,894 + QEN71_RS00445 0.41 +1.3
96,894 + QEN71_RS00445 0.41 +0.1
96,894 + QEN71_RS00445 0.41 -0.0
96,894 + QEN71_RS00445 0.41 -0.7
96,894 + QEN71_RS00445 0.41 -0.2
96,895 - QEN71_RS00445 0.41 -1.5
96,895 - QEN71_RS00445 0.41 -0.9
96,895 - QEN71_RS00445 0.41 -0.1
96,895 - QEN71_RS00445 0.41 -0.7
96,895 - QEN71_RS00445 0.41 -0.2
96,895 - QEN71_RS00445 0.41 +0.4
96,895 - QEN71_RS00445 0.41 -1.2
96,895 - QEN71_RS00445 0.41 -1.1
96,895 - QEN71_RS00445 0.41 +0.3
96,895 - QEN71_RS00445 0.41 +1.2
96,895 - QEN71_RS00445 0.41 +0.8
96,895 - QEN71_RS00445 0.41 -0.4
96,895 - QEN71_RS00445 0.41 +0.5
96,895 - QEN71_RS00445 0.41 +0.2
96,895 - QEN71_RS00445 0.41 +0.5
96,895 - QEN71_RS00445 0.41 -0.4
96,895 - QEN71_RS00445 0.41 -0.2
96,895 - QEN71_RS00445 0.41 +1.4
96,996 + QEN71_RS00445 0.70 +0.2
96,996 + QEN71_RS00445 0.70 -0.6
96,996 + QEN71_RS00445 0.70 -1.2
96,996 + QEN71_RS00445 0.70 -0.1
96,997 - QEN71_RS00445 0.71 +0.1
96,997 - QEN71_RS00445 0.71 -0.2
97,118 + QEN71_RS00450 0.10 +0.1
97,118 + QEN71_RS00450 0.10 +0.1
97,118 + QEN71_RS00450 0.10 -1.9
97,118 + QEN71_RS00450 0.10 -0.2
97,119 - QEN71_RS00450 0.10 +0.4
97,119 - QEN71_RS00450 0.10 -0.7
97,138 + QEN71_RS00450 0.15 +0.1
97,139 - QEN71_RS00450 0.16 -1.3
97,171 + QEN71_RS00450 0.24 +0.8
97,172 - QEN71_RS00450 0.25 +1.1
97,241 - QEN71_RS00450 0.43 +2.0
97,241 - QEN71_RS00450 0.43 -0.5
97,241 - QEN71_RS00450 0.43 -0.1
97,241 - QEN71_RS00450 0.43 -0.8
97,243 - QEN71_RS00450 0.43 -1.1
97,253 - QEN71_RS00450 0.46 -0.6
97,278 + QEN71_RS00450 0.53 -1.9
97,279 - QEN71_RS00450 0.53 +1.8
97,308 + QEN71_RS00450 0.61 -0.2
97,308 + QEN71_RS00450 0.61 -0.6
97,309 - QEN71_RS00450 0.61 -0.5
97,309 - QEN71_RS00450 0.61 -0.8
97,311 + QEN71_RS00450 0.62 -0.3
97,461 + -1.4
97,529 - +0.2
97,529 - +1.4
97,564 - +0.4
97,604 - -2.0
97,604 - +0.4
97,671 - -1.8

Or see this region's nucleotide sequence