Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS43475

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS43465 and QEN71_RS43470 are separated by 46 nucleotidesQEN71_RS43470 and QEN71_RS43475 are separated by 490 nucleotidesQEN71_RS43475 and QEN71_RS43480 are separated by 42 nucleotidesQEN71_RS43480 and QEN71_RS43485 are separated by 48 nucleotides QEN71_RS43465: QEN71_RS43465 - hypothetical protein, at 181,929 to 182,222 _RS43465 QEN71_RS43470: QEN71_RS43470 - hypothetical protein, at 182,269 to 182,499 _RS43470 QEN71_RS43475: QEN71_RS43475 - IS5 family transposase, at 182,990 to 183,802 _RS43475 QEN71_RS43480: QEN71_RS43480 - hypothetical protein, at 183,845 to 184,144 _RS43480 QEN71_RS43485: QEN71_RS43485 - hypothetical protein, at 184,193 to 184,819 _RS43485 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2at 182.053 kb on + strand, within QEN71_RS43465at 182.054 kb on - strand, within QEN71_RS43465at 182.182 kb on + strand, within QEN71_RS43465at 182.183 kb on - strand, within QEN71_RS43465at 182.286 kb on + strandat 182.286 kb on + strandat 182.298 kb on - strand, within QEN71_RS43470at 182.304 kb on + strand, within QEN71_RS43470at 182.366 kb on + strand, within QEN71_RS43470at 182.367 kb on - strand, within QEN71_RS43470at 182.407 kb on - strand, within QEN71_RS43470at 182.455 kb on - strand, within QEN71_RS43470at 182.455 kb on - strand, within QEN71_RS43470at 182.571 kb on + strandat 182.571 kb on + strandat 182.571 kb on + strandat 182.572 kb on - strandat 182.572 kb on - strandat 182.572 kb on - strandat 182.591 kb on + strandat 182.591 kb on + strandat 182.687 kb on + strandat 182.687 kb on + strandat 182.688 kb on - strandat 182.736 kb on + strandat 182.737 kb on - strandat 182.778 kb on - strandat 182.778 kb on - strandat 182.793 kb on + strandat 182.816 kb on + strandat 182.817 kb on - strandat 182.830 kb on + strandat 182.875 kb on + strandat 182.876 kb on - strandat 182.876 kb on - strandat 182.882 kb on + strandat 182.882 kb on + strandat 182.882 kb on + strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.886 kb on + strandat 182.909 kb on + strandat 182.982 kb on - strandat 182.992 kb on - strandat 182.992 kb on - strandat 183.851 kb on + strandat 183.851 kb on + strandat 183.968 kb on + strand, within QEN71_RS43480at 184.048 kb on + strand, within QEN71_RS43480at 184.057 kb on + strand, within QEN71_RS43480at 184.058 kb on - strand, within QEN71_RS43480at 184.058 kb on - strand, within QEN71_RS43480at 184.058 kb on - strand, within QEN71_RS43480at 184.062 kb on + strand, within QEN71_RS43480at 184.063 kb on - strand, within QEN71_RS43480at 184.189 kb on + strandat 184.190 kb on - strandat 184.238 kb on + strandat 184.239 kb on - strandat 184.355 kb on + strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.369 kb on + strand, within QEN71_RS43485at 184.371 kb on + strand, within QEN71_RS43485at 184.372 kb on - strand, within QEN71_RS43485at 184.372 kb on - strand, within QEN71_RS43485at 184.372 kb on - strand, within QEN71_RS43485at 184.390 kb on - strand, within QEN71_RS43485at 184.400 kb on + strand, within QEN71_RS43485at 184.468 kb on + strand, within QEN71_RS43485at 184.469 kb on - strand, within QEN71_RS43485at 184.469 kb on - strand, within QEN71_RS43485at 184.475 kb on - strand, within QEN71_RS43485at 184.475 kb on - strand, within QEN71_RS43485at 184.541 kb on + strand, within QEN71_RS43485at 184.542 kb on - strand, within QEN71_RS43485at 184.542 kb on - strand, within QEN71_RS43485at 184.581 kb on + strand, within QEN71_RS43485at 184.581 kb on + strand, within QEN71_RS43485at 184.622 kb on - strand, within QEN71_RS43485at 184.622 kb on - strand, within QEN71_RS43485at 184.651 kb on - strand, within QEN71_RS43485at 184.664 kb on + strand, within QEN71_RS43485at 184.665 kb on - strand, within QEN71_RS43485at 184.717 kb on + strand, within QEN71_RS43485at 184.718 kb on - strand, within QEN71_RS43485at 184.739 kb on + strand, within QEN71_RS43485at 184.739 kb on + strand, within QEN71_RS43485at 184.740 kb on - strand, within QEN71_RS43485at 184.740 kb on - strand, within QEN71_RS43485at 184.740 kb on - strand, within QEN71_RS43485at 184.797 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
182,053 + QEN71_RS43465 0.42 +0.2
182,054 - QEN71_RS43465 0.43 -1.3
182,182 + QEN71_RS43465 0.86 -0.1
182,183 - QEN71_RS43465 0.86 +0.1
182,286 + +0.9
182,286 + +0.7
182,298 - QEN71_RS43470 0.13 -0.6
182,304 + QEN71_RS43470 0.15 +0.4
182,366 + QEN71_RS43470 0.42 -1.4
182,367 - QEN71_RS43470 0.42 +0.2
182,407 - QEN71_RS43470 0.60 +0.2
182,455 - QEN71_RS43470 0.81 -1.1
182,455 - QEN71_RS43470 0.81 +0.1
182,571 + -1.9
182,571 + -0.6
182,571 + +0.6
182,572 - +0.2
182,572 - +0.3
182,572 - +0.4
182,591 + -1.2
182,591 + +0.5
182,687 + +0.8
182,687 + +0.3
182,688 - -0.4
182,736 + -0.9
182,737 - -0.4
182,778 - +1.1
182,778 - -1.4
182,793 + -0.5
182,816 + +0.3
182,817 - -0.5
182,830 + +0.3
182,875 + -0.3
182,876 - +1.0
182,876 - +0.3
182,882 + +0.1
182,882 + +0.6
182,882 + +0.2
182,883 - -1.3
182,883 - -0.1
182,883 - +1.5
182,883 - -0.2
182,883 - -0.8
182,886 + +0.4
182,909 + +0.6
182,982 - +0.6
182,992 - -1.7
182,992 - -0.1
183,851 + +0.0
183,851 + -0.6
183,968 + QEN71_RS43480 0.41 +0.4
184,048 + QEN71_RS43480 0.68 +2.5
184,057 + QEN71_RS43480 0.71 -1.4
184,058 - QEN71_RS43480 0.71 -0.3
184,058 - QEN71_RS43480 0.71 +0.6
184,058 - QEN71_RS43480 0.71 -0.4
184,062 + QEN71_RS43480 0.72 -2.6
184,063 - QEN71_RS43480 0.73 +0.9
184,189 + -1.8
184,190 - +0.3
184,238 + +1.6
184,239 - -0.1
184,355 + QEN71_RS43485 0.26 +0.8
184,356 - QEN71_RS43485 0.26 +0.4
184,356 - QEN71_RS43485 0.26 +0.4
184,356 - QEN71_RS43485 0.26 -0.1
184,356 - QEN71_RS43485 0.26 -0.8
184,356 - QEN71_RS43485 0.26 -0.3
184,369 + QEN71_RS43485 0.28 +0.2
184,371 + QEN71_RS43485 0.28 -0.8
184,372 - QEN71_RS43485 0.29 +0.0
184,372 - QEN71_RS43485 0.29 +1.3
184,372 - QEN71_RS43485 0.29 +0.0
184,390 - QEN71_RS43485 0.31 -0.3
184,400 + QEN71_RS43485 0.33 +1.2
184,468 + QEN71_RS43485 0.44 +0.3
184,469 - QEN71_RS43485 0.44 -0.7
184,469 - QEN71_RS43485 0.44 -0.2
184,475 - QEN71_RS43485 0.45 +1.1
184,475 - QEN71_RS43485 0.45 -1.1
184,541 + QEN71_RS43485 0.56 -0.4
184,542 - QEN71_RS43485 0.56 -1.1
184,542 - QEN71_RS43485 0.56 +0.9
184,581 + QEN71_RS43485 0.62 +1.3
184,581 + QEN71_RS43485 0.62 -0.1
184,622 - QEN71_RS43485 0.68 +0.3
184,622 - QEN71_RS43485 0.68 +0.9
184,651 - QEN71_RS43485 0.73 +0.2
184,664 + QEN71_RS43485 0.75 +0.6
184,665 - QEN71_RS43485 0.75 -0.2
184,717 + QEN71_RS43485 0.84 -0.2
184,718 - QEN71_RS43485 0.84 -2.0
184,739 + QEN71_RS43485 0.87 -0.4
184,739 + QEN71_RS43485 0.87 -0.9
184,740 - QEN71_RS43485 0.87 -0.7
184,740 - QEN71_RS43485 0.87 -0.1
184,740 - QEN71_RS43485 0.87 +0.1
184,797 - -0.9

Or see this region's nucleotide sequence