Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25135

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS25130 and QEN71_RS25135 are separated by 36 nucleotidesQEN71_RS25135 and QEN71_RS25140 overlap by 4 nucleotides QEN71_RS25130: QEN71_RS25130 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 5,593,567 to 5,594,619 _RS25130 QEN71_RS25135: QEN71_RS25135 - ABC transporter ATP-binding protein, at 5,594,656 to 5,595,465 _RS25135 QEN71_RS25140: QEN71_RS25140 - iron ABC transporter permease, at 5,595,462 to 5,596,511 _RS25140 Position (kb) 5594 5595 5596Strain fitness (log2 ratio) -2 -1 0 1 2at 5593.773 kb on - strand, within QEN71_RS25130at 5593.773 kb on - strand, within QEN71_RS25130at 5593.874 kb on + strand, within QEN71_RS25130at 5593.874 kb on + strand, within QEN71_RS25130at 5593.875 kb on - strand, within QEN71_RS25130at 5593.921 kb on + strand, within QEN71_RS25130at 5593.921 kb on + strand, within QEN71_RS25130at 5593.922 kb on - strand, within QEN71_RS25130at 5593.922 kb on - strand, within QEN71_RS25130at 5594.239 kb on - strand, within QEN71_RS25130at 5594.550 kb on + strandat 5594.550 kb on + strandat 5594.550 kb on + strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.551 kb on - strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.619 kb on + strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.620 kb on - strandat 5594.625 kb on + strandat 5594.625 kb on + strandat 5594.625 kb on + strandat 5594.625 kb on + strandat 5594.626 kb on - strandat 5594.626 kb on - strandat 5594.871 kb on + strand, within QEN71_RS25135at 5594.871 kb on + strand, within QEN71_RS25135at 5594.871 kb on + strand, within QEN71_RS25135at 5594.871 kb on + strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5594.872 kb on - strand, within QEN71_RS25135at 5595.083 kb on + strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.084 kb on - strand, within QEN71_RS25135at 5595.267 kb on + strand, within QEN71_RS25135at 5595.267 kb on + strand, within QEN71_RS25135at 5595.267 kb on + strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.268 kb on - strand, within QEN71_RS25135at 5595.365 kb on + strand, within QEN71_RS25135at 5595.365 kb on + strand, within QEN71_RS25135at 5595.365 kb on + strand, within QEN71_RS25135at 5595.739 kb on + strand, within QEN71_RS25140at 5595.739 kb on + strand, within QEN71_RS25140at 5595.739 kb on + strand, within QEN71_RS25140at 5595.740 kb on - strand, within QEN71_RS25140at 5595.740 kb on - strand, within QEN71_RS25140at 5595.740 kb on - strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.189 kb on + strand, within QEN71_RS25140at 5596.190 kb on - strand, within QEN71_RS25140at 5596.190 kb on - strand, within QEN71_RS25140at 5596.190 kb on - strand, within QEN71_RS25140at 5596.190 kb on - strand, within QEN71_RS25140at 5596.190 kb on - strand, within QEN71_RS25140at 5596.190 kb on - strand, within QEN71_RS25140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
5,593,773 - QEN71_RS25130 0.20 -1.0
5,593,773 - QEN71_RS25130 0.20 -2.4
5,593,874 + QEN71_RS25130 0.29 -0.3
5,593,874 + QEN71_RS25130 0.29 +2.0
5,593,875 - QEN71_RS25130 0.29 -0.4
5,593,921 + QEN71_RS25130 0.34 +1.1
5,593,921 + QEN71_RS25130 0.34 -0.0
5,593,922 - QEN71_RS25130 0.34 -0.1
5,593,922 - QEN71_RS25130 0.34 -0.6
5,594,239 - QEN71_RS25130 0.64 +0.4
5,594,550 + -0.0
5,594,550 + +0.3
5,594,550 + +0.2
5,594,551 - -0.3
5,594,551 - -0.6
5,594,551 - -1.0
5,594,551 - -0.7
5,594,551 - -0.5
5,594,551 - -0.2
5,594,619 + +0.5
5,594,619 + -0.3
5,594,619 + -0.0
5,594,619 + -0.3
5,594,619 + +0.1
5,594,620 - +0.7
5,594,620 - -0.9
5,594,620 - -0.4
5,594,620 - +0.3
5,594,620 - -0.0
5,594,620 - +1.0
5,594,620 - +0.4
5,594,620 - -0.7
5,594,625 + -0.0
5,594,625 + -0.9
5,594,625 + -0.2
5,594,625 + +0.5
5,594,626 - -0.2
5,594,626 - -0.5
5,594,871 + QEN71_RS25135 0.27 -0.9
5,594,871 + QEN71_RS25135 0.27 -0.2
5,594,871 + QEN71_RS25135 0.27 +2.0
5,594,871 + QEN71_RS25135 0.27 +0.6
5,594,872 - QEN71_RS25135 0.27 -1.0
5,594,872 - QEN71_RS25135 0.27 +0.0
5,594,872 - QEN71_RS25135 0.27 +0.3
5,594,872 - QEN71_RS25135 0.27 +0.2
5,594,872 - QEN71_RS25135 0.27 -0.9
5,595,083 + QEN71_RS25135 0.53 -0.2
5,595,084 - QEN71_RS25135 0.53 +0.5
5,595,084 - QEN71_RS25135 0.53 -0.2
5,595,084 - QEN71_RS25135 0.53 -0.3
5,595,084 - QEN71_RS25135 0.53 +0.1
5,595,267 + QEN71_RS25135 0.75 +1.0
5,595,267 + QEN71_RS25135 0.75 -0.6
5,595,267 + QEN71_RS25135 0.75 -0.1
5,595,268 - QEN71_RS25135 0.76 -0.1
5,595,268 - QEN71_RS25135 0.76 +0.0
5,595,268 - QEN71_RS25135 0.76 +0.8
5,595,268 - QEN71_RS25135 0.76 -0.3
5,595,268 - QEN71_RS25135 0.76 -0.0
5,595,268 - QEN71_RS25135 0.76 +0.2
5,595,268 - QEN71_RS25135 0.76 +0.3
5,595,268 - QEN71_RS25135 0.76 +1.1
5,595,365 + QEN71_RS25135 0.88 -0.1
5,595,365 + QEN71_RS25135 0.88 +0.4
5,595,365 + QEN71_RS25135 0.88 +0.0
5,595,739 + QEN71_RS25140 0.26 -0.0
5,595,739 + QEN71_RS25140 0.26 -0.1
5,595,739 + QEN71_RS25140 0.26 +0.2
5,595,740 - QEN71_RS25140 0.26 -0.3
5,595,740 - QEN71_RS25140 0.26 +0.2
5,595,740 - QEN71_RS25140 0.26 +0.2
5,596,189 + QEN71_RS25140 0.69 -1.5
5,596,189 + QEN71_RS25140 0.69 -1.0
5,596,189 + QEN71_RS25140 0.69 -0.0
5,596,189 + QEN71_RS25140 0.69 -0.6
5,596,189 + QEN71_RS25140 0.69 -0.3
5,596,189 + QEN71_RS25140 0.69 -1.0
5,596,189 + QEN71_RS25140 0.69 -1.0
5,596,190 - QEN71_RS25140 0.69 +0.8
5,596,190 - QEN71_RS25140 0.69 +2.3
5,596,190 - QEN71_RS25140 0.69 +0.8
5,596,190 - QEN71_RS25140 0.69 +0.6
5,596,190 - QEN71_RS25140 0.69 -0.1
5,596,190 - QEN71_RS25140 0.69 -0.3

Or see this region's nucleotide sequence