Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS23105

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS23100 and QEN71_RS23105 are separated by 96 nucleotidesQEN71_RS23105 and QEN71_RS23110 overlap by 4 nucleotidesQEN71_RS23110 and QEN71_RS23115 are separated by 419 nucleotides QEN71_RS23100: QEN71_RS23100 - translation initiation factor IF-2, at 5,134,604 to 5,137,504 _RS23100 QEN71_RS23105: QEN71_RS23105 - transcription termination factor NusA, at 5,137,601 to 5,139,076 _RS23105 QEN71_RS23110: QEN71_RS23110 - ribosome maturation factor RimP, at 5,139,073 to 5,139,531 _RS23110 QEN71_RS23115: QEN71_RS23115 - pseudouridine synthase, at 5,139,951 to 5,141,780 _RS23115 Position (kb) 5137 5138 5139 5140Strain fitness (log2 ratio) -2 -1 0 1at 5137.516 kb on - strandat 5137.563 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.631 kb on - strandat 5137.659 kb on - strandat 5139.332 kb on - strand, within QEN71_RS23110at 5139.332 kb on - strand, within QEN71_RS23110at 5139.332 kb on - strand, within QEN71_RS23110at 5139.332 kb on - strand, within QEN71_RS23110at 5139.355 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.371 kb on - strand, within QEN71_RS23110at 5139.436 kb on - strand, within QEN71_RS23110at 5139.436 kb on - strand, within QEN71_RS23110at 5139.438 kb on - strand, within QEN71_RS23110at 5139.438 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.442 kb on - strand, within QEN71_RS23110at 5139.486 kb on - strandat 5139.486 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.542 kb on - strandat 5139.571 kb on - strandat 5139.571 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.633 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.678 kb on - strandat 5139.708 kb on - strandat 5139.708 kb on - strandat 5139.708 kb on - strandat 5139.708 kb on - strandat 5139.739 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
5,137,516 - +1.3
5,137,563 - +0.3
5,137,631 - -0.8
5,137,631 - -1.2
5,137,631 - -2.2
5,137,631 - +1.1
5,137,631 - +0.1
5,137,631 - -1.0
5,137,631 - +0.0
5,137,631 - -0.6
5,137,659 - +0.9
5,139,332 - QEN71_RS23110 0.56 +0.6
5,139,332 - QEN71_RS23110 0.56 +0.9
5,139,332 - QEN71_RS23110 0.56 -0.9
5,139,332 - QEN71_RS23110 0.56 -0.6
5,139,355 - QEN71_RS23110 0.61 -1.1
5,139,371 - QEN71_RS23110 0.65 -1.2
5,139,371 - QEN71_RS23110 0.65 -0.1
5,139,371 - QEN71_RS23110 0.65 -0.1
5,139,371 - QEN71_RS23110 0.65 +0.9
5,139,371 - QEN71_RS23110 0.65 +0.7
5,139,436 - QEN71_RS23110 0.79 +0.4
5,139,436 - QEN71_RS23110 0.79 -1.2
5,139,438 - QEN71_RS23110 0.80 -1.0
5,139,438 - QEN71_RS23110 0.80 -1.4
5,139,442 - QEN71_RS23110 0.80 +1.7
5,139,442 - QEN71_RS23110 0.80 +0.1
5,139,442 - QEN71_RS23110 0.80 -0.1
5,139,442 - QEN71_RS23110 0.80 +0.2
5,139,442 - QEN71_RS23110 0.80 -0.5
5,139,442 - QEN71_RS23110 0.80 -0.1
5,139,442 - QEN71_RS23110 0.80 -0.4
5,139,442 - QEN71_RS23110 0.80 -0.2
5,139,442 - QEN71_RS23110 0.80 -1.1
5,139,442 - QEN71_RS23110 0.80 -0.9
5,139,486 - -2.1
5,139,486 - -1.4
5,139,542 - -0.2
5,139,542 - +0.4
5,139,542 - -0.4
5,139,542 - +0.4
5,139,542 - -0.0
5,139,542 - -0.5
5,139,542 - -0.8
5,139,542 - -0.5
5,139,542 - +0.7
5,139,542 - -0.4
5,139,542 - -0.4
5,139,542 - -0.8
5,139,542 - +0.4
5,139,542 - +0.9
5,139,542 - -0.6
5,139,542 - -0.7
5,139,571 - +1.1
5,139,571 - -1.1
5,139,633 - -0.6
5,139,633 - -0.9
5,139,633 - -0.1
5,139,633 - +1.1
5,139,633 - +0.9
5,139,633 - +0.5
5,139,633 - +0.0
5,139,678 - -1.7
5,139,678 - -0.6
5,139,678 - -0.8
5,139,678 - +0.1
5,139,678 - +0.1
5,139,678 - +0.3
5,139,678 - +0.2
5,139,708 - +0.0
5,139,708 - -0.5
5,139,708 - -0.9
5,139,708 - -0.9
5,139,739 - +0.5

Or see this region's nucleotide sequence